Wall clock time and date at job start Tue Mar 31 2020 17:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37988 * 120.82641 * 2 1 4 4 C 1.39127 * 119.26786 * 180.02562 * 3 2 1 5 5 O 1.35495 * 119.52482 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.94725 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80227 * 359.70347 * 6 4 3 8 8 C 1.39565 * 120.62126 * 0.58774 * 7 6 4 9 9 C 1.47619 * 120.49929 * 179.70406 * 8 7 6 10 10 O 1.21578 * 120.00260 * 125.50309 * 9 8 7 11 11 N 1.34782 * 119.99705 * 305.50628 * 9 8 7 12 12 C 1.47159 * 121.22140 * 354.36418 * 11 9 8 13 13 C 1.52838 * 107.97494 * 122.72345 * 12 11 9 14 14 C 1.53093 * 110.58445 * 57.34466 * 13 12 11 15 15 H 1.08998 * 112.48988 * 70.57223 * 14 13 12 16 16 C 1.56482 * 106.42018 * 195.41138 * 14 13 12 17 17 C 1.54507 * 102.40018 * 78.36612 * 16 14 13 18 18 N 1.47440 * 107.29608 * 22.91021 * 17 16 14 19 19 C 1.36938 * 126.05629 * 181.52094 * 18 17 16 20 20 H 1.08003 * 119.99747 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00079 * 0.02562 * 19 18 17 22 22 N 1.31622 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47550 * 90.00098 * 23 21 19 25 25 H 1.48505 * 109.47250 * 210.00179 * 23 21 19 26 26 H 1.48505 * 109.47043 * 329.99765 * 23 21 19 27 27 C 1.46465 * 107.88087 * 1.51445 * 18 17 16 28 28 H 1.09004 * 108.42403 * 89.26553 * 27 18 17 29 29 C 1.46752 * 121.22098 * 174.39513 * 11 9 8 30 30 H 1.08998 * 109.47290 * 274.91123 * 1 2 3 31 31 H 1.09006 * 109.46886 * 34.90863 * 1 2 3 32 32 H 1.08996 * 109.47596 * 154.90626 * 1 2 3 33 33 H 1.08007 * 120.36722 * 0.03647 * 3 2 1 34 34 H 0.96700 * 114.00312 * 89.99941 * 5 4 3 35 35 H 1.07993 * 119.68968 * 180.28800 * 7 6 4 36 36 H 1.08995 * 109.76402 * 242.34309 * 12 11 9 37 37 H 1.08997 * 109.75841 * 3.05974 * 12 11 9 38 38 H 1.09000 * 109.25245 * 177.63158 * 13 12 11 39 39 H 1.09001 * 109.25657 * 297.10056 * 13 12 11 40 40 H 1.08998 * 110.91616 * 320.14579 * 16 14 13 41 41 H 1.08999 * 110.84946 * 196.56149 * 16 14 13 42 42 H 1.08993 * 109.90901 * 263.44062 * 17 16 14 43 43 H 1.09005 * 109.90446 * 142.37162 * 17 16 14 44 44 H 0.97000 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.23451 * 112.19993 * 29 11 9 46 46 H 1.09004 * 109.19545 * 352.81604 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1849 0.0000 4 6 3.6048 1.1471 -0.0005 5 8 4.3044 2.3075 -0.0011 6 7 4.2548 -0.0069 -0.0005 7 6 3.6204 -1.1602 0.0057 8 6 2.2255 -1.2044 0.0004 9 6 1.5169 -2.4994 0.0009 10 8 0.6854 -2.7371 0.8554 11 7 1.7920 -3.4184 -0.9459 12 6 2.7013 -3.1147 -2.0624 13 6 3.8330 -4.1417 -2.0417 14 6 3.2719 -5.5630 -2.1347 15 1 2.8622 -5.7859 -3.1198 16 6 4.4308 -6.5248 -1.7097 17 6 4.4131 -6.4052 -0.1693 18 7 3.0660 -5.9493 0.2195 19 6 2.6401 -5.6890 1.4947 20 1 1.6267 -5.3584 1.6686 21 6 3.5107 -5.8500 2.5637 22 7 4.7458 -6.2524 2.3517 23 14 2.9295 -5.4956 4.3032 24 1 2.3646 -6.7333 4.8983 25 1 4.0769 -5.0310 5.1236 26 1 1.8849 -4.4405 4.2708 27 6 2.2643 -5.8240 -0.9998 28 1 1.7818 -6.7818 -1.1948 29 6 1.1951 -4.7583 -0.9016 30 1 -0.3634 0.0880 1.0239 31 1 -0.3633 0.8428 -0.5881 32 1 -0.3634 -0.9306 -0.4358 33 1 1.6936 2.1314 0.0006 34 1 4.5078 2.6446 0.8821 35 1 4.1847 -2.0810 0.0102 36 1 2.1607 -3.1811 -3.0065 37 1 3.1106 -2.1117 -1.9419 38 1 4.4974 -3.9615 -2.8868 39 1 4.3956 -4.0380 -1.1138 40 1 5.3851 -6.1861 -2.1129 41 1 4.2196 -7.5479 -2.0206 42 1 5.1586 -5.6793 0.1551 43 1 4.6204 -7.3762 0.2806 44 1 5.3541 -6.3653 3.0988 45 1 0.5001 -4.8695 -1.7339 46 1 0.6535 -4.8786 0.0367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042230663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:26 Heat of formation + Delta-G solvation = -1.910545 kcal Electronic energy + Delta-G solvation = -30347.105504 eV Core-core repulsion = 26431.024974 eV Total energy + Delta-G solvation = -3916.080530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94486 -39.67112 -38.16797 -36.99061 -35.09486 -33.89155 -32.83861 -31.46107 -30.61216 -28.98931 -28.40054 -27.97217 -24.93402 -24.44015 -23.38271 -22.56900 -22.30739 -20.14228 -19.96757 -18.56502 -18.36556 -17.34680 -17.07109 -16.49586 -15.88803 -15.75220 -14.95157 -14.74614 -14.39349 -14.23421 -14.13724 -13.91265 -13.64540 -13.35467 -13.05546 -12.88321 -12.79610 -12.65471 -12.37107 -12.18817 -11.97585 -11.82435 -11.61696 -11.40484 -11.26388 -10.93267 -10.80127 -10.70612 -10.11440 -9.96781 -9.86920 -9.77702 -9.64224 -9.63794 -9.52542 -9.32481 -8.85409 -8.54091 -8.19012 -6.77946 -5.65580 -2.97784 0.67865 1.08879 2.95057 3.31731 3.33773 3.45755 3.51708 3.57802 3.75297 4.46348 4.56557 4.59537 4.67898 4.92234 5.04305 5.07976 5.14363 5.28397 5.37102 5.47869 5.51262 5.52491 5.56323 5.67215 5.71615 5.72470 5.77411 5.86967 5.96069 6.01573 6.12328 6.15800 6.23803 6.28825 6.36281 6.42017 6.46673 6.60745 6.71687 6.90460 7.04203 7.30678 7.62200 7.63518 7.76356 7.81243 7.89778 8.29238 8.52492 9.27948 9.88794 10.53296 11.46416 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.005177 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.845491 B = 5407.199672 C = 6157.560780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.014 3.986 3 C -0.196 4.196 4 C 0.322 3.678 5 O -0.483 6.483 6 N -0.506 5.506 7 C 0.170 3.830 8 C -0.182 4.182 9 C 0.575 3.425 10 O -0.525 6.525 11 N -0.586 5.586 12 C 0.106 3.894 13 C -0.124 4.124 14 C -0.101 4.101 15 H 0.076 0.924 16 C -0.143 4.143 17 C 0.177 3.823 18 N -0.589 5.589 19 C -0.216 4.216 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.900 3.100 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.153 3.847 28 H 0.028 0.972 29 C 0.115 3.885 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.402 0.598 35 H 0.172 0.828 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.250 0.750 45 H 0.057 0.943 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 11.974 -10.641 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.006 3.994 3 C -0.217 4.217 4 C 0.144 3.856 5 O -0.291 6.291 6 N -0.225 5.225 7 C 0.012 3.988 8 C -0.187 4.187 9 C 0.361 3.639 10 O -0.402 6.402 11 N -0.318 5.318 12 C -0.017 4.017 13 C -0.162 4.162 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.181 4.181 17 C 0.053 3.947 18 N -0.314 5.314 19 C -0.344 4.344 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.571 5.571 23 Si 0.731 3.269 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.045 3.955 28 H 0.045 0.955 29 C -0.008 4.008 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.260 0.740 35 H 0.189 0.811 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.870 11.869 -10.536 16.336 hybrid contribution -0.723 0.205 1.508 1.685 sum -4.593 12.074 -9.028 15.761 Atomic orbital electron populations 1.20874 0.89288 1.03456 1.03697 1.20218 0.97131 0.90798 0.91276 1.21843 0.93744 0.99227 1.06889 1.19328 0.87046 0.85267 0.93967 1.84689 1.76052 1.34253 1.34092 1.67231 1.41920 0.98156 1.15175 1.22889 0.90269 0.95301 0.90355 1.20997 0.95533 0.94680 1.07483 1.17677 0.82141 0.82852 0.81192 1.90789 1.33670 1.78851 1.36847 1.47739 1.46310 1.13000 1.24769 1.21766 0.91544 0.99195 0.89180 1.21861 0.97130 0.94226 1.02994 1.22455 0.97195 0.94817 0.97659 0.90578 1.23231 0.97028 0.97917 0.99968 1.21221 0.87335 0.99195 0.86957 1.44283 1.08431 1.78220 1.00482 1.19008 0.96511 1.37717 0.81160 0.90161 1.24690 0.95960 1.01901 0.97629 1.69953 1.04694 1.53035 1.29468 0.86258 0.77547 0.78090 0.84977 1.21717 1.21887 1.20354 1.20709 0.91659 0.94882 0.88277 0.95463 1.21449 0.95732 0.80711 1.02906 0.89527 0.90912 0.90507 0.83858 0.74006 0.81149 0.91519 0.90598 0.91809 0.90068 0.92199 0.92699 0.93653 0.94097 0.93986 0.92530 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.36 36.00 0.34 -1.00 16 2 C 0.01 0.19 5.94 -103.96 -0.62 -0.43 16 3 C -0.20 -2.31 9.74 -39.34 -0.38 -2.69 16 4 C 0.32 4.28 7.74 -16.96 -0.13 4.15 16 5 O -0.48 -5.30 13.55 -18.18 -0.25 -5.55 16 6 N -0.51 -7.95 10.37 -12.97 -0.13 -8.09 16 7 C 0.17 2.76 8.81 -17.14 -0.15 2.61 16 8 C -0.18 -2.92 4.73 -104.82 -0.50 -3.42 16 9 C 0.57 10.63 6.17 -12.43 -0.08 10.55 16 10 O -0.53 -11.47 15.56 5.30 0.08 -11.38 16 11 N -0.59 -9.90 2.97 -175.29 -0.52 -10.42 16 12 C 0.11 1.46 5.84 -3.77 -0.02 1.44 16 13 C -0.12 -1.83 5.05 -26.77 -0.14 -1.97 16 14 C -0.10 -1.59 3.68 -88.18 -0.32 -1.92 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.14 -2.49 6.36 -24.07 -0.15 -2.64 16 17 C 0.18 4.09 4.60 -2.74 -0.01 4.08 16 18 N -0.59 -14.05 3.20 -164.41 -0.53 -14.57 16 19 C -0.22 -5.87 9.70 -15.06 -0.15 -6.02 16 20 H 0.08 2.24 6.51 -52.48 -0.34 1.90 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.96 10.38 55.49 0.58 -26.39 16 23 Si 0.90 23.10 29.55 -169.99 -5.02 18.07 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.15 2.92 2.97 -68.30 -0.20 2.71 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 C 0.12 2.04 5.67 -4.77 -0.03 2.02 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.08 0.99 6.71 -51.93 -0.35 0.64 16 33 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.40 2.43 9.06 45.56 0.41 2.84 16 35 H 0.17 2.93 7.30 -52.49 -0.38 2.55 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.01 5.09 -51.93 -0.26 0.74 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.48 6.35 -51.93 -0.33 1.15 16 40 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.17 7.04 -51.93 -0.37 0.80 16 43 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 2.02 5.57 -51.93 -0.29 1.73 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -33.66 359.41 -8.67 -42.33 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.66 Total: 3.38 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.64 Total: 7.20 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.60 Total: -59.46 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.16 Total: -16.93 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.66 -8.67 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.420 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds