Wall clock time and date at job start Tue Mar 31 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37988 * 120.82641 * 2 1 4 4 C 1.39127 * 119.26786 * 180.02562 * 3 2 1 5 5 O 1.35495 * 119.52482 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.94725 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80227 * 359.70347 * 6 4 3 8 8 C 1.39565 * 120.62126 * 0.58774 * 7 6 4 9 9 C 1.47619 * 120.49929 * 179.70406 * 8 7 6 10 10 O 1.21578 * 120.00260 * 125.50309 * 9 8 7 11 11 N 1.34782 * 119.99705 * 305.50628 * 9 8 7 12 12 C 1.47159 * 121.22140 * 354.36418 * 11 9 8 13 13 C 1.52838 * 107.97494 * 122.72345 * 12 11 9 14 14 C 1.53093 * 110.58445 * 57.34466 * 13 12 11 15 15 H 1.08998 * 112.48988 * 70.57223 * 14 13 12 16 16 C 1.56482 * 106.42018 * 195.41138 * 14 13 12 17 17 C 1.54507 * 102.40018 * 78.36612 * 16 14 13 18 18 N 1.47440 * 107.29608 * 22.91021 * 17 16 14 19 19 C 1.36938 * 126.05629 * 181.52094 * 18 17 16 20 20 H 1.08003 * 119.99747 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00079 * 0.02562 * 19 18 17 22 22 N 1.31622 * 120.00237 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47550 * 90.00098 * 23 21 19 25 25 H 1.48505 * 109.47250 * 210.00179 * 23 21 19 26 26 H 1.48505 * 109.47043 * 329.99765 * 23 21 19 27 27 C 1.46465 * 107.88087 * 1.51445 * 18 17 16 28 28 H 1.09004 * 108.42403 * 89.26553 * 27 18 17 29 29 C 1.46752 * 121.22098 * 174.39513 * 11 9 8 30 30 H 1.08998 * 109.47290 * 274.91123 * 1 2 3 31 31 H 1.09006 * 109.46886 * 34.90863 * 1 2 3 32 32 H 1.08996 * 109.47596 * 154.90626 * 1 2 3 33 33 H 1.08007 * 120.36722 * 0.03647 * 3 2 1 34 34 H 0.96700 * 114.00312 * 89.99941 * 5 4 3 35 35 H 1.07993 * 119.68968 * 180.28800 * 7 6 4 36 36 H 1.08995 * 109.76402 * 242.34309 * 12 11 9 37 37 H 1.08997 * 109.75841 * 3.05974 * 12 11 9 38 38 H 1.09000 * 109.25245 * 177.63158 * 13 12 11 39 39 H 1.09001 * 109.25657 * 297.10056 * 13 12 11 40 40 H 1.08998 * 110.91616 * 320.14579 * 16 14 13 41 41 H 1.08999 * 110.84946 * 196.56149 * 16 14 13 42 42 H 1.08993 * 109.90901 * 263.44062 * 17 16 14 43 43 H 1.09005 * 109.90446 * 142.37162 * 17 16 14 44 44 H 0.97000 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.23451 * 112.19993 * 29 11 9 46 46 H 1.09004 * 109.19545 * 352.81604 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1849 0.0000 4 6 3.6048 1.1471 -0.0005 5 8 4.3044 2.3075 -0.0011 6 7 4.2548 -0.0069 -0.0005 7 6 3.6204 -1.1602 0.0057 8 6 2.2255 -1.2044 0.0004 9 6 1.5169 -2.4994 0.0009 10 8 0.6854 -2.7371 0.8554 11 7 1.7920 -3.4184 -0.9459 12 6 2.7013 -3.1147 -2.0624 13 6 3.8330 -4.1417 -2.0417 14 6 3.2719 -5.5630 -2.1347 15 1 2.8622 -5.7859 -3.1198 16 6 4.4308 -6.5248 -1.7097 17 6 4.4131 -6.4052 -0.1693 18 7 3.0660 -5.9493 0.2195 19 6 2.6401 -5.6890 1.4947 20 1 1.6267 -5.3584 1.6686 21 6 3.5107 -5.8500 2.5637 22 7 4.7458 -6.2524 2.3517 23 14 2.9295 -5.4956 4.3032 24 1 2.3646 -6.7333 4.8983 25 1 4.0769 -5.0310 5.1236 26 1 1.8849 -4.4405 4.2708 27 6 2.2643 -5.8240 -0.9998 28 1 1.7818 -6.7818 -1.1948 29 6 1.1951 -4.7583 -0.9016 30 1 -0.3634 0.0880 1.0239 31 1 -0.3633 0.8428 -0.5881 32 1 -0.3634 -0.9306 -0.4358 33 1 1.6936 2.1314 0.0006 34 1 4.5078 2.6446 0.8821 35 1 4.1847 -2.0810 0.0102 36 1 2.1607 -3.1811 -3.0065 37 1 3.1106 -2.1117 -1.9419 38 1 4.4974 -3.9615 -2.8868 39 1 4.3956 -4.0380 -1.1138 40 1 5.3851 -6.1861 -2.1129 41 1 4.2196 -7.5479 -2.0206 42 1 5.1586 -5.6793 0.1551 43 1 4.6204 -7.3762 0.2806 44 1 5.3541 -6.3653 3.0988 45 1 0.5001 -4.8695 -1.7339 46 1 0.6535 -4.8786 0.0367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042230663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:25 Heat of formation + Delta-G solvation = -28.079034 kcal Electronic energy + Delta-G solvation = -30348.240255 eV Core-core repulsion = 26431.024974 eV Total energy + Delta-G solvation = -3917.215281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12829 -40.96966 -39.58086 -38.02266 -36.61145 -34.97675 -34.64191 -32.97604 -31.98463 -30.39452 -30.05995 -28.99329 -26.54445 -26.07046 -24.65429 -23.92265 -23.39010 -21.74344 -21.43633 -19.89750 -19.42311 -18.65234 -18.44370 -18.10991 -17.22245 -16.86341 -16.75706 -16.13653 -15.83183 -15.73568 -15.55763 -15.27521 -14.96933 -14.50489 -14.31775 -14.20697 -13.99980 -13.83953 -13.75150 -13.57143 -13.19959 -13.11398 -13.06287 -12.96233 -12.73453 -12.66447 -12.54471 -12.34120 -12.07007 -11.66429 -11.42084 -11.30704 -11.20038 -11.02750 -10.67996 -10.66593 -10.52083 -9.99335 -9.54124 -8.79613 -7.83605 -5.13210 -0.41734 0.02594 1.35111 1.36642 1.46731 1.61934 2.04468 2.30280 2.46967 2.68590 3.34676 3.36918 3.47654 3.55168 3.63531 3.84673 3.90011 3.94464 4.10770 4.19186 4.26865 4.35111 4.45523 4.48084 4.57218 4.58522 4.66070 4.67065 4.68306 4.75437 4.84754 4.88151 4.97729 5.01627 5.13293 5.16839 5.19233 5.30881 5.38301 5.54036 5.62183 5.67497 5.74265 5.84133 6.24017 6.44455 6.51558 6.75026 7.14661 7.15933 7.84114 8.47415 9.26837 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.005177 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.845491 B = 5407.199672 C = 6157.560780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.014 3.986 3 C -0.177 4.177 4 C 0.325 3.675 5 O -0.484 6.484 6 N -0.530 5.530 7 C 0.163 3.837 8 C -0.200 4.200 9 C 0.569 3.431 10 O -0.572 6.572 11 N -0.587 5.587 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.083 4.083 15 H 0.124 0.876 16 C -0.129 4.129 17 C 0.185 3.815 18 N -0.605 5.605 19 C -0.202 4.202 20 H 0.068 0.932 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.949 3.051 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.286 1.286 27 C 0.142 3.858 28 H 0.032 0.968 29 C 0.119 3.881 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.184 0.816 34 H 0.424 0.576 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.008 0.992 43 H -0.002 1.002 44 H 0.242 0.758 45 H 0.098 0.902 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 14.206 -13.705 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.006 3.994 3 C -0.198 4.198 4 C 0.146 3.854 5 O -0.295 6.295 6 N -0.250 5.250 7 C 0.006 3.994 8 C -0.205 4.205 9 C 0.357 3.643 10 O -0.453 6.453 11 N -0.317 5.317 12 C -0.014 4.014 13 C -0.159 4.159 14 C -0.103 4.103 15 H 0.142 0.858 16 C -0.167 4.167 17 C 0.061 3.939 18 N -0.330 5.330 19 C -0.331 4.331 20 H 0.086 0.914 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.780 3.220 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.212 1.212 27 C 0.035 3.965 28 H 0.049 0.951 29 C -0.005 4.005 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.201 0.799 34 H 0.286 0.714 35 H 0.165 0.835 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.026 0.974 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.116 0.884 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.893 14.108 -13.641 20.226 hybrid contribution -0.414 -0.402 2.431 2.498 sum -5.307 13.707 -11.211 18.486 Atomic orbital electron populations 1.20902 0.87804 1.04093 1.04088 1.20517 0.98204 0.90335 0.90355 1.22146 0.92999 1.00070 1.04581 1.19567 0.87895 0.85108 0.92787 1.84649 1.75822 1.32943 1.36086 1.67181 1.42738 0.98760 1.16336 1.22478 0.90215 0.95011 0.91745 1.20864 0.95354 0.94567 1.09714 1.18111 0.81664 0.83877 0.80649 1.90750 1.35932 1.79966 1.38612 1.47884 1.46322 1.12283 1.25249 1.21986 0.90976 0.99070 0.89380 1.21826 0.97650 0.94081 1.02293 1.22503 0.94913 0.94682 0.98174 0.85772 1.23093 0.99127 0.99559 0.94937 1.20969 0.86204 0.95603 0.91174 1.44458 1.09558 1.77877 1.01067 1.19059 0.95676 1.35354 0.83045 0.91447 1.25268 0.96433 1.03458 1.00334 1.70137 1.05309 1.54951 1.29376 0.85484 0.76632 0.77651 0.82224 1.21164 1.22094 1.21197 1.21025 0.92528 0.95479 0.87506 0.95094 1.21343 0.95606 0.80970 1.02551 0.89728 0.87133 0.92368 0.79893 0.71387 0.83486 0.87636 0.90209 0.88249 0.94410 0.90107 0.91268 0.97407 0.98383 0.94872 0.88411 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.36 71.24 0.67 -1.68 16 2 C 0.01 0.35 5.94 -19.44 -0.12 0.24 16 3 C -0.18 -3.60 9.74 22.42 0.22 -3.38 16 4 C 0.32 7.89 7.74 84.81 0.66 8.55 16 5 O -0.48 -9.18 13.55 -87.96 -1.19 -10.37 16 6 N -0.53 -16.42 10.37 -307.81 -3.19 -19.61 16 7 C 0.16 5.42 8.81 85.04 0.75 6.17 16 8 C -0.20 -6.42 4.73 -19.99 -0.09 -6.52 16 9 C 0.57 21.48 6.17 86.72 0.53 22.01 16 10 O -0.57 -26.10 15.56 -3.96 -0.06 -26.16 16 11 N -0.59 -19.50 2.97 -826.74 -2.45 -21.95 16 12 C 0.11 2.69 5.84 86.20 0.50 3.19 16 13 C -0.12 -3.28 5.05 30.57 0.15 -3.13 16 14 C -0.08 -2.35 3.68 -9.21 -0.03 -2.39 16 15 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.13 -4.27 6.36 32.32 0.21 -4.06 16 17 C 0.19 8.90 4.60 86.71 0.40 9.30 16 18 N -0.60 -29.85 3.20 -674.08 -2.15 -32.00 16 19 C -0.20 -11.52 9.70 84.03 0.81 -10.71 16 20 H 0.07 3.99 6.51 -2.91 -0.02 3.97 16 21 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 22 N -0.95 -58.53 10.38 21.65 0.22 -58.31 16 23 Si 0.95 49.87 29.55 68.60 2.03 51.89 16 24 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.29 -15.40 7.11 99.48 0.71 -14.70 16 26 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 27 C 0.14 5.26 2.97 44.77 0.13 5.39 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 C 0.12 4.13 5.67 85.77 0.49 4.62 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.43 8.13 -2.38 -0.02 1.41 16 32 H 0.06 1.45 6.71 -2.39 -0.02 1.43 16 33 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.42 3.83 9.06 -74.06 -0.67 3.16 16 35 H 0.15 5.45 7.30 -2.91 -0.02 5.43 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.99 5.09 -2.39 -0.01 1.97 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.38 6.35 -2.39 -0.02 1.37 16 40 H 0.08 2.36 7.98 -2.39 -0.02 2.35 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.01 0.42 7.04 -2.39 -0.02 0.41 16 43 H 0.00 -0.12 7.56 -2.38 -0.02 -0.13 16 44 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.06 2.45 5.57 -2.39 -0.01 2.44 16 Total: -1.00 -80.47 359.41 -0.71 -81.18 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.35 Total: 10.98 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 5.74 Total: 24.34 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -7.58 Total: -131.87 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.25 Total: -36.53 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.03 Total: 51.89 kcal Total: -80.47 -0.71 -81.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.103 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds