Wall clock time and date at job start Tue Mar 31 2020 17:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37998 * 120.81928 * 2 1 4 4 C 1.39125 * 119.25949 * 180.29913 * 3 2 1 5 5 O 1.35504 * 119.51974 * 179.72083 * 4 3 2 6 6 N 1.32428 * 120.95165 * 359.40227 * 4 3 2 7 7 C 1.31639 * 121.79813 * 0.63390 * 6 4 3 8 8 C 1.39561 * 120.62685 * 359.66115 * 7 6 4 9 9 C 1.47614 * 120.49500 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99735 * 227.42440 * 9 8 7 11 11 N 1.34770 * 120.00423 * 47.43397 * 9 8 7 12 12 C 1.46596 * 119.75338 * 5.73894 * 11 9 8 13 13 C 1.53890 * 110.70687 * 132.25578 * 12 11 9 14 14 C 1.51979 * 107.29335 * 51.81492 * 13 12 11 15 15 H 1.09001 * 111.01576 * 56.51588 * 14 13 12 16 16 C 1.53695 * 115.00882 * 184.55259 * 14 13 12 17 17 C 1.55297 * 101.81476 * 153.46577 * 16 14 13 18 18 N 1.48158 * 107.04514 * 337.55555 * 17 16 14 19 19 C 1.36932 * 126.39952 * 174.95624 * 18 17 16 20 20 H 1.08005 * 120.00141 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00078 * 0.04840 * 19 18 17 22 22 N 1.31614 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47227 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47175 * 120.00013 * 23 21 19 26 26 H 1.48499 * 109.47045 * 239.99641 * 23 21 19 27 27 C 1.45507 * 107.20042 * 354.99774 * 18 17 16 28 28 H 1.08996 * 109.56589 * 273.37191 * 27 18 17 29 29 C 1.47802 * 119.75553 * 185.47055 * 11 9 8 30 30 H 1.09003 * 109.47184 * 95.38318 * 1 2 3 31 31 H 1.09006 * 109.47414 * 215.38235 * 1 2 3 32 32 H 1.08999 * 109.47201 * 335.38236 * 1 2 3 33 33 H 1.07998 * 120.36769 * 0.02562 * 3 2 1 34 34 H 0.96699 * 113.99876 * 89.99864 * 5 4 3 35 35 H 1.08003 * 119.68257 * 179.68111 * 7 6 4 36 36 H 1.09002 * 109.22891 * 252.56896 * 12 11 9 37 37 H 1.08995 * 109.22710 * 11.98138 * 12 11 9 38 38 H 1.09003 * 109.89131 * 171.25926 * 13 12 11 39 39 H 1.09000 * 109.89508 * 292.29422 * 13 12 11 40 40 H 1.08998 * 110.96199 * 271.59856 * 16 14 13 41 41 H 1.09008 * 110.95862 * 35.33782 * 16 14 13 42 42 H 1.09001 * 109.92318 * 218.20856 * 17 16 14 43 43 H 1.09002 * 110.08606 * 96.99989 * 17 16 14 44 44 H 0.96997 * 120.00006 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.06111 * 350.47325 * 29 11 9 46 46 H 1.08997 * 110.06506 * 112.03036 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0063 5 8 4.3042 2.3078 -0.0121 6 7 4.2547 -0.0065 -0.0005 7 6 3.6204 -1.1600 -0.0009 8 6 2.2255 -1.2043 -0.0005 9 6 1.5171 -2.4994 -0.0004 10 8 0.6002 -2.6908 -0.7755 11 7 1.8866 -3.4696 0.8590 12 6 2.9061 -3.1918 1.8752 13 6 2.4447 -3.6852 3.2579 14 6 2.0193 -5.1358 3.1011 15 1 2.8289 -5.7382 2.6891 16 6 1.4193 -5.7770 4.3625 17 6 0.5036 -6.8750 3.7563 18 7 0.1976 -6.4661 2.3655 19 6 -0.4997 -7.1946 1.4391 20 1 -0.6632 -6.7946 0.4493 21 6 -0.9968 -8.4472 1.7723 22 7 -0.7975 -8.9347 2.9785 23 14 -1.9485 -9.4406 0.5088 24 1 -2.0342 -8.6749 -0.7606 25 1 -1.2511 -10.7287 0.2643 26 1 -3.3175 -9.7080 1.0184 27 6 0.7773 -5.1463 2.1676 28 1 0.0696 -4.3842 2.4938 29 6 1.2568 -4.8040 0.7738 30 1 -0.3634 -0.0964 -1.0232 31 1 -0.3634 -0.8379 0.5951 32 1 -0.3633 0.9342 0.4281 33 1 1.6935 2.1314 0.0004 34 1 4.5113 2.6466 0.8696 35 1 4.1848 -2.0808 -0.0012 36 1 3.8316 -3.6994 1.6034 37 1 3.0854 -2.1176 1.9195 38 1 3.2668 -3.6148 3.9701 39 1 1.6024 -3.0859 3.6035 40 1 2.1985 -6.2184 4.9839 41 1 0.8355 -5.0512 4.9288 42 1 -0.4185 -6.9496 4.3328 43 1 1.0199 -7.8350 3.7561 44 1 -1.1445 -9.8101 3.2112 45 1 0.4121 -4.7754 0.0854 46 1 1.9870 -5.5416 0.4410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042230664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:30 Heat of formation + Delta-G solvation = -2.521919 kcal Electronic energy + Delta-G solvation = -29171.643194 eV Core-core repulsion = 25255.536153 eV Total energy + Delta-G solvation = -3916.107041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25110 -39.89188 -38.37395 -37.25435 -35.53871 -34.12668 -32.95509 -31.53592 -31.03239 -29.25732 -28.52485 -28.06885 -25.12393 -24.54266 -23.43082 -22.62719 -22.18107 -20.32014 -19.96193 -19.27949 -18.71364 -17.73395 -17.13616 -16.56208 -16.23830 -15.92855 -15.08130 -14.82748 -14.70140 -14.43295 -14.33041 -14.01543 -13.77171 -13.39078 -13.29535 -13.08906 -13.01132 -12.91095 -12.56108 -12.36455 -12.26350 -12.02992 -11.91268 -11.56216 -11.33727 -10.98430 -10.83291 -10.78639 -10.23669 -10.13189 -9.99167 -9.92250 -9.87591 -9.68828 -9.58476 -9.51901 -9.18124 -8.65280 -8.51569 -6.88001 -5.73933 -3.07833 0.36846 0.82548 2.58785 2.90579 3.22630 3.39877 3.40084 3.46895 3.48912 4.20092 4.29126 4.38510 4.49001 4.66185 4.82001 4.86416 4.96186 5.06998 5.11049 5.29804 5.35389 5.42686 5.44078 5.46423 5.58175 5.63682 5.71641 5.73615 5.86302 5.95751 5.99255 6.03084 6.07554 6.10003 6.13299 6.33344 6.43578 6.52310 6.65556 6.70777 7.00991 7.07073 7.42657 7.49296 7.53314 7.58668 7.79668 8.15298 8.21411 9.16981 9.79939 10.46261 11.38398 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.003143 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.501548 B = 8907.803982 C = 9731.954710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 C -0.193 4.193 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.509 5.509 7 C 0.162 3.838 8 C -0.189 4.189 9 C 0.561 3.439 10 O -0.527 6.527 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.119 4.119 14 C -0.113 4.113 15 H 0.078 0.922 16 C -0.137 4.137 17 C 0.177 3.823 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.157 3.843 28 H 0.023 0.977 29 C 0.116 3.884 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.168 0.832 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.252 0.748 45 H 0.094 0.906 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 19.704 0.488 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.015 3.985 3 C -0.214 4.214 4 C 0.149 3.851 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.004 3.996 8 C -0.194 4.194 9 C 0.348 3.652 10 O -0.404 6.404 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.157 4.157 14 C -0.132 4.132 15 H 0.097 0.903 16 C -0.175 4.175 17 C 0.053 3.947 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.047 3.953 28 H 0.040 0.960 29 C -0.006 4.006 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.185 0.815 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.877 19.387 -0.539 21.765 hybrid contribution -1.171 -0.487 -0.066 1.270 sum 8.706 18.900 -0.605 20.818 Atomic orbital electron populations 1.20917 0.88907 1.03376 1.04347 1.20279 0.97408 0.90689 0.90073 1.21943 0.93733 0.99426 1.06311 1.19328 0.87079 0.85224 0.93478 1.84736 1.75920 1.34091 1.34131 1.67193 1.41880 0.98190 1.15504 1.22794 0.90087 0.95312 0.91435 1.20966 0.95405 0.94697 1.08348 1.17965 0.83019 0.82988 0.81256 1.90817 1.28785 1.80684 1.40101 1.48224 1.40505 1.12501 1.31843 1.21906 0.90694 1.00714 0.88620 1.21802 1.01485 0.97159 0.95290 1.22272 0.98499 0.94195 0.98280 0.90332 1.22711 0.99279 0.99430 0.96110 1.21551 0.95674 0.93815 0.83700 1.44177 1.62483 1.14466 1.10540 1.19090 1.26392 0.97382 0.92779 0.90190 1.24783 1.00984 0.97586 0.96883 1.69948 1.50152 1.18388 1.18349 0.86074 0.79382 0.80059 0.80493 1.20350 1.21753 1.21763 1.20881 0.92299 0.89884 0.92187 0.95964 1.21714 0.98382 0.80423 1.00101 0.89135 0.90206 0.90898 0.83573 0.73895 0.81547 0.91277 0.90472 0.90733 0.91445 0.92186 0.92563 0.94456 0.92539 0.93792 0.88752 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.95 36.00 0.32 -0.89 16 2 C 0.02 0.26 5.94 -103.96 -0.62 -0.36 16 3 C -0.19 -1.77 9.70 -39.34 -0.38 -2.15 16 4 C 0.33 3.30 7.74 -16.97 -0.13 3.17 16 5 O -0.48 -3.95 13.55 -18.20 -0.25 -4.19 16 6 N -0.51 -5.84 10.37 -12.97 -0.13 -5.97 16 7 C 0.16 1.79 8.77 -17.14 -0.15 1.64 16 8 C -0.19 -2.32 4.77 -104.83 -0.50 -2.82 16 9 C 0.56 8.51 6.44 -12.44 -0.08 8.43 16 10 O -0.53 -9.82 15.17 5.29 0.08 -9.74 16 11 N -0.60 -8.74 3.02 -174.20 -0.53 -9.27 16 12 C 0.10 1.17 4.98 -3.53 -0.02 1.15 16 13 C -0.12 -1.45 5.72 -26.79 -0.15 -1.60 16 14 C -0.11 -1.82 2.62 -89.52 -0.23 -2.05 16 15 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 16 C -0.14 -2.40 6.54 -25.15 -0.16 -2.56 16 17 C 0.18 4.14 5.46 -1.91 -0.01 4.13 16 18 N -0.59 -14.54 3.35 -163.16 -0.55 -15.09 16 19 C -0.23 -6.21 9.87 -15.06 -0.15 -6.36 16 20 H 0.08 2.14 7.41 -52.48 -0.39 1.75 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.63 10.43 55.49 0.58 -26.05 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.16 3.10 2.74 -68.05 -0.19 2.91 16 28 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 29 C 0.12 2.10 5.67 -4.17 -0.02 2.07 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.97 7.15 -51.93 -0.37 0.60 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.40 1.17 9.06 45.56 0.41 1.58 16 35 H 0.17 1.56 7.17 -52.48 -0.38 1.19 16 36 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 37 H 0.08 0.76 5.27 -51.93 -0.27 0.48 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.93 8.12 -51.92 -0.42 0.51 16 42 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 43 H 0.06 1.46 7.19 -51.93 -0.37 1.09 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.09 1.94 6.74 -51.93 -0.35 1.59 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -33.44 363.16 -8.80 -42.24 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.88 Total: 1.10 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.57 Total: 4.43 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.63 Total: -56.38 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.17 Total: -13.93 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -8.80 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.719 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds