Wall clock time and date at job start Tue Mar 31 2020 17:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37998 * 120.81928 * 2 1 4 4 C 1.39125 * 119.25949 * 180.29913 * 3 2 1 5 5 O 1.35504 * 119.51974 * 179.72083 * 4 3 2 6 6 N 1.32428 * 120.95165 * 359.40227 * 4 3 2 7 7 C 1.31639 * 121.79813 * 0.63390 * 6 4 3 8 8 C 1.39561 * 120.62685 * 359.66115 * 7 6 4 9 9 C 1.47614 * 120.49500 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99735 * 227.42440 * 9 8 7 11 11 N 1.34770 * 120.00423 * 47.43397 * 9 8 7 12 12 C 1.46596 * 119.75338 * 5.73894 * 11 9 8 13 13 C 1.53890 * 110.70687 * 132.25578 * 12 11 9 14 14 C 1.51979 * 107.29335 * 51.81492 * 13 12 11 15 15 H 1.09001 * 111.01576 * 56.51588 * 14 13 12 16 16 C 1.53695 * 115.00882 * 184.55259 * 14 13 12 17 17 C 1.55297 * 101.81476 * 153.46577 * 16 14 13 18 18 N 1.48158 * 107.04514 * 337.55555 * 17 16 14 19 19 C 1.36932 * 126.39952 * 174.95624 * 18 17 16 20 20 H 1.08005 * 120.00141 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00078 * 0.04840 * 19 18 17 22 22 N 1.31614 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47227 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47175 * 120.00013 * 23 21 19 26 26 H 1.48499 * 109.47045 * 239.99641 * 23 21 19 27 27 C 1.45507 * 107.20042 * 354.99774 * 18 17 16 28 28 H 1.08996 * 109.56589 * 273.37191 * 27 18 17 29 29 C 1.47802 * 119.75553 * 185.47055 * 11 9 8 30 30 H 1.09003 * 109.47184 * 95.38318 * 1 2 3 31 31 H 1.09006 * 109.47414 * 215.38235 * 1 2 3 32 32 H 1.08999 * 109.47201 * 335.38236 * 1 2 3 33 33 H 1.07998 * 120.36769 * 0.02562 * 3 2 1 34 34 H 0.96699 * 113.99876 * 89.99864 * 5 4 3 35 35 H 1.08003 * 119.68257 * 179.68111 * 7 6 4 36 36 H 1.09002 * 109.22891 * 252.56896 * 12 11 9 37 37 H 1.08995 * 109.22710 * 11.98138 * 12 11 9 38 38 H 1.09003 * 109.89131 * 171.25926 * 13 12 11 39 39 H 1.09000 * 109.89508 * 292.29422 * 13 12 11 40 40 H 1.08998 * 110.96199 * 271.59856 * 16 14 13 41 41 H 1.09008 * 110.95862 * 35.33782 * 16 14 13 42 42 H 1.09001 * 109.92318 * 218.20856 * 17 16 14 43 43 H 1.09002 * 110.08606 * 96.99989 * 17 16 14 44 44 H 0.96997 * 120.00006 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.06111 * 350.47325 * 29 11 9 46 46 H 1.08997 * 110.06506 * 112.03036 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0063 5 8 4.3042 2.3078 -0.0121 6 7 4.2547 -0.0065 -0.0005 7 6 3.6204 -1.1600 -0.0009 8 6 2.2255 -1.2043 -0.0005 9 6 1.5171 -2.4994 -0.0004 10 8 0.6002 -2.6908 -0.7755 11 7 1.8866 -3.4696 0.8590 12 6 2.9061 -3.1918 1.8752 13 6 2.4447 -3.6852 3.2579 14 6 2.0193 -5.1358 3.1011 15 1 2.8289 -5.7382 2.6891 16 6 1.4193 -5.7770 4.3625 17 6 0.5036 -6.8750 3.7563 18 7 0.1976 -6.4661 2.3655 19 6 -0.4997 -7.1946 1.4391 20 1 -0.6632 -6.7946 0.4493 21 6 -0.9968 -8.4472 1.7723 22 7 -0.7975 -8.9347 2.9785 23 14 -1.9485 -9.4406 0.5088 24 1 -2.0342 -8.6749 -0.7606 25 1 -1.2511 -10.7287 0.2643 26 1 -3.3175 -9.7080 1.0184 27 6 0.7773 -5.1463 2.1676 28 1 0.0696 -4.3842 2.4938 29 6 1.2568 -4.8040 0.7738 30 1 -0.3634 -0.0964 -1.0232 31 1 -0.3634 -0.8379 0.5951 32 1 -0.3633 0.9342 0.4281 33 1 1.6935 2.1314 0.0004 34 1 4.5113 2.6466 0.8696 35 1 4.1848 -2.0808 -0.0012 36 1 3.8316 -3.6994 1.6034 37 1 3.0854 -2.1176 1.9195 38 1 3.2668 -3.6148 3.9701 39 1 1.6024 -3.0859 3.6035 40 1 2.1985 -6.2184 4.9839 41 1 0.8355 -5.0512 4.9288 42 1 -0.4185 -6.9496 4.3328 43 1 1.0199 -7.8350 3.7561 44 1 -1.1445 -9.8101 3.2112 45 1 0.4121 -4.7754 0.0854 46 1 1.9870 -5.5416 0.4410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042230664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:29 Heat of formation + Delta-G solvation = -28.138402 kcal Electronic energy + Delta-G solvation = -29172.754009 eV Core-core repulsion = 25255.536153 eV Total energy + Delta-G solvation = -3917.217855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19996 -41.01248 -39.68586 -38.02446 -36.95650 -34.97609 -34.66289 -32.96680 -32.25668 -30.59371 -30.03288 -28.97173 -26.59565 -26.04137 -24.56710 -23.67909 -23.23772 -21.81161 -21.49559 -20.50325 -19.41585 -18.88438 -18.41942 -17.99274 -17.22188 -16.97783 -16.75433 -16.13000 -15.84674 -15.71565 -15.57960 -15.33965 -14.91487 -14.67708 -14.48264 -14.17533 -14.08267 -13.87614 -13.80307 -13.56745 -13.46529 -13.16898 -13.08990 -13.04503 -12.77641 -12.72298 -12.52139 -12.12240 -11.98323 -11.77421 -11.54461 -11.40091 -11.23316 -11.03297 -10.74055 -10.68161 -10.49475 -10.01821 -9.74250 -8.91280 -7.87088 -5.21777 -0.44602 0.04728 1.43397 1.44035 1.50122 1.54577 1.79280 2.44654 2.48720 2.61841 3.28974 3.31486 3.47937 3.52088 3.56248 3.78267 3.88639 3.96357 3.97937 4.17564 4.25777 4.27600 4.31304 4.36709 4.51399 4.58085 4.61287 4.64588 4.67812 4.71761 4.82110 4.86900 4.90571 4.99696 5.10045 5.14536 5.16849 5.24609 5.35925 5.37549 5.49022 5.58847 5.66453 5.78765 6.18764 6.29151 6.55229 6.78243 6.99047 7.07711 7.76020 8.42834 9.24026 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.003143 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.501548 B = 8907.803982 C = 9731.954710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.018 3.982 3 C -0.182 4.182 4 C 0.332 3.668 5 O -0.486 6.486 6 N -0.525 5.525 7 C 0.169 3.831 8 C -0.205 4.205 9 C 0.562 3.438 10 O -0.573 6.573 11 N -0.595 5.595 12 C 0.100 3.900 13 C -0.109 4.109 14 C -0.096 4.096 15 H 0.080 0.920 16 C -0.121 4.121 17 C 0.180 3.820 18 N -0.613 5.613 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.148 3.852 28 H 0.006 0.994 29 C 0.129 3.871 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.182 0.818 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.068 0.932 42 H -0.002 1.002 43 H 0.024 0.976 44 H 0.247 0.753 45 H 0.060 0.940 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 22.692 0.872 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 C -0.203 4.203 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.244 5.244 7 C 0.011 3.989 8 C -0.211 4.211 9 C 0.350 3.650 10 O -0.453 6.453 11 N -0.327 5.327 12 C -0.021 4.021 13 C -0.148 4.148 14 C -0.115 4.115 15 H 0.099 0.901 16 C -0.159 4.159 17 C 0.056 3.944 18 N -0.338 5.338 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.040 3.960 28 H 0.024 0.976 29 C 0.006 3.994 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.193 0.807 34 H 0.289 0.711 35 H 0.199 0.801 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.016 0.984 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.314 22.436 -0.125 25.593 hybrid contribution -1.908 -1.284 -0.191 2.308 sum 10.406 21.152 -0.315 23.576 Atomic orbital electron populations 1.20886 0.88919 1.03927 1.03509 1.20421 0.97591 0.90982 0.90056 1.22135 0.93430 0.99781 1.04968 1.19530 0.87547 0.85416 0.92087 1.84691 1.75624 1.33158 1.36290 1.67269 1.42179 0.98631 1.16348 1.22928 0.89371 0.95939 0.90658 1.20738 0.95961 0.93314 1.11056 1.18437 0.82389 0.83839 0.80320 1.90789 1.31002 1.81591 1.41935 1.48230 1.40820 1.10915 1.32731 1.22211 0.90300 1.02566 0.87063 1.21795 1.02756 0.93508 0.96710 1.22201 0.96368 0.97156 0.95818 0.90135 1.22583 0.98796 0.97709 0.96830 1.21367 0.94847 0.94896 0.83329 1.44441 1.62633 1.15985 1.10717 1.19348 1.26139 0.97694 0.93200 0.90601 1.25539 1.02492 0.98793 0.98684 1.70148 1.51324 1.18382 1.19863 0.85123 0.77775 0.78549 0.78629 1.19546 1.21542 1.21979 1.21023 0.93572 0.87037 0.94329 0.97632 1.21269 0.97427 0.82566 0.98175 0.90134 0.92789 0.87739 0.80683 0.71077 0.80120 0.88795 0.88131 0.86785 0.91797 0.89487 0.91288 0.98373 0.95793 0.94379 0.92176 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.95 71.24 0.64 -1.63 16 2 C 0.02 0.35 5.94 -19.44 -0.12 0.23 16 3 C -0.18 -2.72 9.70 22.43 0.22 -2.50 16 4 C 0.33 5.54 7.74 84.82 0.66 6.19 16 5 O -0.49 -6.09 13.55 -88.06 -1.19 -7.29 16 6 N -0.52 -10.36 10.37 -307.80 -3.19 -13.55 16 7 C 0.17 3.28 8.77 85.04 0.75 4.03 16 8 C -0.21 -4.72 4.77 -20.00 -0.10 -4.81 16 9 C 0.56 17.00 6.44 86.72 0.56 17.56 16 10 O -0.57 -22.28 15.17 -3.99 -0.06 -22.35 16 11 N -0.60 -16.98 3.02 -823.32 -2.48 -19.46 16 12 C 0.10 1.93 4.98 86.66 0.43 2.36 16 13 C -0.11 -2.26 5.72 30.56 0.17 -2.09 16 14 C -0.10 -2.92 2.62 -10.08 -0.03 -2.94 16 15 H 0.08 2.47 8.13 -2.39 -0.02 2.45 16 16 C -0.12 -4.09 6.54 31.62 0.21 -3.88 16 17 C 0.18 8.75 5.46 86.85 0.47 9.23 16 18 N -0.61 -31.36 3.35 -670.12 -2.24 -33.61 16 19 C -0.23 -13.34 9.87 84.04 0.83 -12.51 16 20 H 0.08 4.26 7.41 -2.91 -0.02 4.23 16 21 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 22 N -0.95 -57.30 10.43 21.65 0.23 -57.07 16 23 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 27 C 0.15 5.97 2.74 45.45 0.12 6.10 16 28 H 0.01 0.27 7.93 -2.39 -0.02 0.25 16 29 C 0.13 4.81 5.67 85.58 0.49 5.29 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.33 7.15 -2.38 -0.02 1.32 16 32 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.43 0.71 9.06 -74.06 -0.67 0.04 16 35 H 0.18 2.83 7.17 -2.91 -0.02 2.81 16 36 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 37 H 0.10 1.57 5.27 -2.39 -0.01 1.56 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.42 7.99 -2.39 -0.02 1.40 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 42 H 0.00 -0.11 7.77 -2.39 -0.02 -0.13 16 43 H 0.02 1.30 7.19 -2.39 -0.02 1.28 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.06 2.64 6.74 -2.39 -0.02 2.62 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -78.10 363.16 -0.81 -78.91 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.34 Total: 7.90 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 5.77 Total: 17.52 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -7.69 Total: -123.69 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.25 Total: -29.63 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -78.10 -0.81 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds