Wall clock time and date at job start Tue Mar 31 2020 16:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38354 * 119.41043 * 2 1 4 4 C 1.38342 * 119.45936 * 179.76268 * 3 2 1 5 5 C 1.39985 * 118.34783 * 0.50477 * 4 3 2 6 6 C 1.47526 * 120.59408 * 179.77920 * 5 4 3 7 7 O 1.21590 * 119.99853 * 232.40961 * 6 5 4 8 8 N 1.34778 * 120.00135 * 52.41774 * 6 5 4 9 9 C 1.45229 * 119.33941 * 356.11257 * 8 6 5 10 10 C 1.50603 * 112.83859 * 136.00050 * 9 8 6 11 11 C 1.48864 * 117.90473 * 27.68125 * 10 9 8 12 12 H 1.09000 * 106.76023 * 217.69309 * 11 10 9 13 13 C 1.55053 * 111.54324 * 101.51360 * 11 10 9 14 14 C 1.55063 * 101.27471 * 194.53058 * 13 11 10 15 15 N 1.47551 * 104.84532 * 35.97393 * 14 13 11 16 16 C 1.36937 * 125.85775 * 156.09766 * 15 14 13 17 17 H 1.08002 * 120.00124 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99925 * 0.02562 * 16 15 14 19 19 N 1.31612 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00097 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47169 * 60.00271 * 20 18 16 22 22 H 1.48500 * 109.47343 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47024 * 300.00474 * 20 18 16 24 24 C 1.47624 * 108.28693 * 336.11121 * 15 14 13 25 25 H 1.09001 * 108.10302 * 244.73072 * 24 15 14 26 26 C 1.44674 * 119.91246 * 176.50598 * 8 6 5 27 27 C 1.40286 * 118.80551 * 359.49694 * 5 4 3 28 28 O 1.35422 * 119.79689 * 180.27966 * 27 5 4 29 29 N 1.31885 * 119.40905 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47230 * 269.97896 * 1 2 3 31 31 H 1.09009 * 109.47277 * 29.97965 * 1 2 3 32 32 H 1.08997 * 109.47518 * 149.97717 * 1 2 3 33 33 H 1.08001 * 120.27013 * 0.04456 * 3 2 1 34 34 H 1.08005 * 120.82537 * 180.25171 * 4 3 2 35 35 H 1.09001 * 108.81163 * 15.12904 * 9 8 6 36 36 H 1.08999 * 108.80765 * 256.86742 * 9 8 6 37 37 H 1.09000 * 107.75155 * 265.54862 * 10 9 8 38 38 H 1.08997 * 107.72457 * 149.79122 * 10 9 8 39 39 H 1.09001 * 111.07147 * 76.52465 * 13 11 10 40 40 H 1.08996 * 111.07630 * 312.54607 * 13 11 10 41 41 H 1.08999 * 110.36223 * 154.80910 * 14 13 11 42 42 H 1.08994 * 110.36725 * 277.02025 * 14 13 11 43 43 H 0.97001 * 120.00513 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.26745 * 108.00347 * 26 8 6 45 45 H 1.08999 * 108.17600 * 349.65176 * 26 8 6 46 46 H 0.96697 * 114.00630 * 90.00069 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 0.0050 5 6 4.2355 -0.0250 -0.0010 6 6 5.7097 -0.0815 -0.0009 7 8 6.2927 -0.7425 -0.8385 8 7 6.4102 0.5995 0.9276 9 6 5.7042 1.4515 1.8682 10 6 6.2030 1.3012 3.2812 11 6 7.6186 0.8857 3.4799 12 1 7.6317 0.2144 4.3385 13 6 8.5205 2.0930 3.8451 14 6 9.9334 1.4949 3.6205 15 7 9.7842 0.5992 2.4574 16 6 10.7873 0.2116 1.6097 17 1 10.5710 -0.4501 0.7839 18 6 12.0822 0.6692 1.8115 19 7 12.3460 1.4751 2.8181 20 14 13.4505 0.1410 0.6547 21 1 13.1268 0.5784 -0.7270 22 1 14.7292 0.7620 1.0842 23 1 13.5832 -1.3378 0.6875 24 6 8.3681 0.1929 2.3643 25 1 8.3125 -0.8827 2.5321 26 6 7.8515 0.4827 0.9731 27 6 3.4756 -1.2042 -0.0009 28 8 4.0990 -2.4064 -0.0009 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6411 2.1375 0.0007 34 1 4.1224 2.1344 0.0092 35 1 4.6436 1.2015 1.8413 36 1 5.8260 2.4903 1.5611 37 1 5.5685 0.5697 3.7816 38 1 6.0632 2.2571 3.7859 39 1 8.3801 2.3864 4.8854 40 1 8.3399 2.9338 3.1755 41 1 10.6497 2.2864 3.4002 42 1 10.2503 0.9307 4.4976 43 1 13.2508 1.7952 2.9590 44 1 8.2989 1.4101 0.6158 45 1 8.1479 -0.3297 0.3095 46 1 4.2801 -2.7556 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042246699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:14 Heat of formation + Delta-G solvation = 3.967320 kcal Electronic energy + Delta-G solvation = -29243.698618 eV Core-core repulsion = 25327.872972 eV Total energy + Delta-G solvation = -3915.825647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25635 -39.84288 -38.17427 -37.43231 -35.55178 -33.48740 -33.14340 -31.90473 -31.57468 -29.54328 -28.64347 -27.99877 -25.07961 -24.48160 -23.60912 -22.87237 -22.45149 -20.62553 -20.13485 -18.86935 -17.97631 -17.28951 -17.08832 -16.89710 -16.29373 -15.65334 -15.21264 -15.03379 -14.88645 -14.61793 -14.36986 -14.03101 -13.95739 -13.69459 -13.47599 -12.96616 -12.75172 -12.56775 -12.49912 -12.33499 -12.26252 -11.86807 -11.71337 -11.66399 -11.50171 -10.99269 -10.89683 -10.72354 -10.27725 -10.14106 -10.11107 -9.94484 -9.88070 -9.68824 -9.56417 -9.44081 -9.04080 -8.69268 -8.34638 -6.91140 -5.68249 -3.10430 0.44531 0.80533 2.65541 3.00278 3.26297 3.41631 3.42246 3.45872 3.47820 4.18857 4.32268 4.43031 4.46780 4.65205 4.77909 4.93821 4.94971 5.04299 5.05151 5.18329 5.22598 5.31337 5.42434 5.52148 5.57447 5.59339 5.63945 5.66088 5.76970 5.87274 5.92533 6.02219 6.11880 6.16861 6.23546 6.44908 6.55287 6.56602 6.79651 6.81542 7.00046 7.25749 7.47417 7.51785 7.59242 7.62468 7.81773 8.26213 8.31347 9.18517 9.78595 10.42529 11.35749 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.003186 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.142916 B = 8787.570130 C = 9613.221377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.188 4.188 4 C -0.029 4.029 5 C -0.194 4.194 6 C 0.557 3.443 7 O -0.516 6.516 8 N -0.587 5.587 9 C 0.106 3.894 10 C -0.111 4.111 11 C -0.090 4.090 12 H 0.061 0.939 13 C -0.141 4.141 14 C 0.151 3.849 15 N -0.593 5.593 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.165 3.835 25 H 0.026 0.974 26 C 0.104 3.896 27 C 0.363 3.637 28 O -0.466 6.466 29 N -0.505 5.505 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.013 0.987 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.485 3.022 0.844 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.208 4.208 4 C -0.054 4.054 5 C -0.200 4.200 6 C 0.342 3.658 7 O -0.392 6.392 8 N -0.319 5.319 9 C -0.017 4.017 10 C -0.150 4.150 11 C -0.110 4.110 12 H 0.079 0.921 13 C -0.180 4.180 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.057 3.943 25 H 0.044 0.956 26 C -0.020 4.020 27 C 0.184 3.816 28 O -0.273 6.273 29 N -0.225 5.225 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -23.286 1.919 -0.198 23.366 hybrid contribution 1.299 0.360 0.055 1.349 sum -21.987 2.280 -0.142 22.105 Atomic orbital electron populations 1.20807 0.88181 1.03948 1.03522 1.21229 0.97027 0.87197 0.91820 1.21891 0.94353 0.99591 1.05001 1.21754 0.94412 0.97135 0.92141 1.21056 0.95388 0.94555 1.09032 1.17937 0.85833 0.79892 0.82097 1.90836 1.70380 1.40892 1.37061 1.47054 1.08225 1.45189 1.31479 1.21010 0.96324 0.94524 0.89858 1.20405 0.96660 1.02290 0.95649 1.20444 0.93073 0.98675 0.98798 0.92093 1.23210 0.98787 0.96574 0.99413 1.21954 0.92248 0.94680 0.88512 1.44750 1.01009 1.54918 1.31101 1.19035 0.86727 1.23600 1.05886 0.90354 1.24769 0.97305 0.99850 0.98409 1.69794 1.19379 1.37181 1.30656 0.86162 0.81218 0.78080 0.80143 1.21018 1.21590 1.21123 1.19958 0.86581 0.96586 0.91186 0.95608 1.21510 0.76490 1.03606 1.00376 1.19020 0.86127 0.84748 0.91746 1.84786 1.76521 1.32308 1.33664 1.67083 1.09204 1.30471 1.15767 0.89848 0.90175 0.90127 0.83709 0.83555 0.90349 0.91987 0.92625 0.90793 0.92322 0.92278 0.87706 0.96854 0.93666 0.91124 0.89578 0.73804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.00 0.37 -0.24 16 2 C 0.17 1.52 6.78 -82.53 -0.56 0.96 16 3 C -0.19 -1.47 9.71 -39.50 -0.38 -1.85 16 4 C -0.03 -0.28 7.61 -38.89 -0.30 -0.57 16 5 C -0.19 -2.55 4.80 -104.69 -0.50 -3.05 16 6 C 0.56 9.19 6.87 -12.47 -0.09 9.10 16 7 O -0.52 -10.79 16.01 0.84 0.01 -10.77 16 8 N -0.59 -9.17 3.03 -179.90 -0.54 -9.72 16 9 C 0.11 1.25 5.15 -5.92 -0.03 1.22 16 10 C -0.11 -1.35 5.55 -29.96 -0.17 -1.52 16 11 C -0.09 -1.48 2.63 -92.47 -0.24 -1.73 16 12 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 13 C -0.14 -2.49 6.24 -24.56 -0.15 -2.64 16 14 C 0.15 3.53 5.91 -2.38 -0.01 3.51 16 15 N -0.59 -14.69 3.16 -164.76 -0.52 -15.21 16 16 C -0.22 -6.16 9.77 -15.06 -0.15 -6.30 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.46 10.12 55.49 0.56 -25.90 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.17 3.35 3.29 -69.13 -0.23 3.12 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C 0.10 2.02 5.46 -5.92 -0.03 1.99 16 27 C 0.36 4.92 7.75 -16.61 -0.13 4.79 16 28 O -0.47 -6.44 12.73 -22.40 -0.29 -6.73 16 29 N -0.51 -6.22 10.28 -9.21 -0.09 -6.31 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.28 8.07 -51.92 -0.42 -0.14 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.15 7.25 -52.48 -0.38 0.77 16 35 H 0.08 0.76 4.87 -51.93 -0.25 0.50 16 36 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.07 0.77 7.65 -51.93 -0.40 0.37 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 2.77 5.91 -51.93 -0.31 2.47 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.07 1.49 8.07 -51.93 -0.42 1.07 16 45 H 0.09 1.88 6.84 -51.93 -0.36 1.52 16 46 H 0.40 3.66 9.06 45.56 0.41 4.07 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -34.63 364.46 -8.99 -43.62 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.89 Total: 1.84 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.70 Total: 6.48 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.60 Total: -57.14 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.27 Total: -17.50 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.63 -8.99 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.586 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds