Wall clock time and date at job start Tue Mar 31 2020 16:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38354 * 119.41043 * 2 1 4 4 C 1.38342 * 119.45936 * 179.76268 * 3 2 1 5 5 C 1.39985 * 118.34783 * 0.50477 * 4 3 2 6 6 C 1.47526 * 120.59408 * 179.77920 * 5 4 3 7 7 O 1.21590 * 119.99853 * 232.40961 * 6 5 4 8 8 N 1.34778 * 120.00135 * 52.41774 * 6 5 4 9 9 C 1.45229 * 119.33941 * 356.11257 * 8 6 5 10 10 C 1.50603 * 112.83859 * 136.00050 * 9 8 6 11 11 C 1.48864 * 117.90473 * 27.68125 * 10 9 8 12 12 H 1.09000 * 106.76023 * 217.69309 * 11 10 9 13 13 C 1.55053 * 111.54324 * 101.51360 * 11 10 9 14 14 C 1.55063 * 101.27471 * 194.53058 * 13 11 10 15 15 N 1.47551 * 104.84532 * 35.97393 * 14 13 11 16 16 C 1.36937 * 125.85775 * 156.09766 * 15 14 13 17 17 H 1.08002 * 120.00124 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99925 * 0.02562 * 16 15 14 19 19 N 1.31612 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00097 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47169 * 60.00271 * 20 18 16 22 22 H 1.48500 * 109.47343 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47024 * 300.00474 * 20 18 16 24 24 C 1.47624 * 108.28693 * 336.11121 * 15 14 13 25 25 H 1.09001 * 108.10302 * 244.73072 * 24 15 14 26 26 C 1.44674 * 119.91246 * 176.50598 * 8 6 5 27 27 C 1.40286 * 118.80551 * 359.49694 * 5 4 3 28 28 O 1.35422 * 119.79689 * 180.27966 * 27 5 4 29 29 N 1.31885 * 119.40905 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47230 * 269.97896 * 1 2 3 31 31 H 1.09009 * 109.47277 * 29.97965 * 1 2 3 32 32 H 1.08997 * 109.47518 * 149.97717 * 1 2 3 33 33 H 1.08001 * 120.27013 * 0.04456 * 3 2 1 34 34 H 1.08005 * 120.82537 * 180.25171 * 4 3 2 35 35 H 1.09001 * 108.81163 * 15.12904 * 9 8 6 36 36 H 1.08999 * 108.80765 * 256.86742 * 9 8 6 37 37 H 1.09000 * 107.75155 * 265.54862 * 10 9 8 38 38 H 1.08997 * 107.72457 * 149.79122 * 10 9 8 39 39 H 1.09001 * 111.07147 * 76.52465 * 13 11 10 40 40 H 1.08996 * 111.07630 * 312.54607 * 13 11 10 41 41 H 1.08999 * 110.36223 * 154.80910 * 14 13 11 42 42 H 1.08994 * 110.36725 * 277.02025 * 14 13 11 43 43 H 0.97001 * 120.00513 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.26745 * 108.00347 * 26 8 6 45 45 H 1.08999 * 108.17600 * 349.65176 * 26 8 6 46 46 H 0.96697 * 114.00630 * 90.00069 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 0.0050 5 6 4.2355 -0.0250 -0.0010 6 6 5.7097 -0.0815 -0.0009 7 8 6.2927 -0.7425 -0.8385 8 7 6.4102 0.5995 0.9276 9 6 5.7042 1.4515 1.8682 10 6 6.2030 1.3012 3.2812 11 6 7.6186 0.8857 3.4799 12 1 7.6317 0.2144 4.3385 13 6 8.5205 2.0930 3.8451 14 6 9.9334 1.4949 3.6205 15 7 9.7842 0.5992 2.4574 16 6 10.7873 0.2116 1.6097 17 1 10.5710 -0.4501 0.7839 18 6 12.0822 0.6692 1.8115 19 7 12.3460 1.4751 2.8181 20 14 13.4505 0.1410 0.6547 21 1 13.1268 0.5784 -0.7270 22 1 14.7292 0.7620 1.0842 23 1 13.5832 -1.3378 0.6875 24 6 8.3681 0.1929 2.3643 25 1 8.3125 -0.8827 2.5321 26 6 7.8515 0.4827 0.9731 27 6 3.4756 -1.2042 -0.0009 28 8 4.0990 -2.4064 -0.0009 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6411 2.1375 0.0007 34 1 4.1224 2.1344 0.0092 35 1 4.6436 1.2015 1.8413 36 1 5.8260 2.4903 1.5611 37 1 5.5685 0.5697 3.7816 38 1 6.0632 2.2571 3.7859 39 1 8.3801 2.3864 4.8854 40 1 8.3399 2.9338 3.1755 41 1 10.6497 2.2864 3.4002 42 1 10.2503 0.9307 4.4976 43 1 13.2508 1.7952 2.9590 44 1 8.2989 1.4101 0.6158 45 1 8.1479 -0.3297 0.3095 46 1 4.2801 -2.7556 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042246699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:13 Heat of formation + Delta-G solvation = -22.843430 kcal Electronic energy + Delta-G solvation = -29244.861220 eV Core-core repulsion = 25327.872972 eV Total energy + Delta-G solvation = -3916.988248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26532 -41.02192 -39.59134 -38.36887 -37.00678 -34.93484 -34.26571 -33.22068 -32.62530 -30.97870 -30.28756 -28.87525 -26.70760 -25.93911 -24.53115 -23.93629 -23.57258 -22.22274 -21.53951 -19.82665 -19.19261 -18.96794 -18.35613 -17.97710 -17.42753 -16.94848 -16.64800 -16.54513 -16.10565 -15.80625 -15.59611 -15.26706 -15.01963 -14.80048 -14.44029 -14.20708 -13.99460 -13.68747 -13.64208 -13.49594 -13.34573 -13.18344 -13.01857 -12.88570 -12.71137 -12.70261 -12.66882 -12.24153 -12.05702 -11.71511 -11.50895 -11.38324 -11.34727 -11.05196 -10.80788 -10.74165 -10.51187 -9.88155 -9.66268 -8.93894 -7.81259 -5.25274 -0.37869 0.06305 1.42596 1.44039 1.46312 1.51520 1.88118 2.39575 2.45689 2.60082 3.27009 3.28723 3.54128 3.60358 3.68004 3.73462 3.80880 3.95814 3.98290 4.19082 4.24254 4.28644 4.33881 4.41213 4.43595 4.62131 4.70767 4.74336 4.85400 4.88130 4.90459 4.93923 4.95233 5.04243 5.08310 5.15900 5.17930 5.32763 5.42329 5.51648 5.52982 5.55953 5.67988 5.81248 6.28356 6.28933 6.46261 6.81450 7.00441 7.08314 7.73573 8.36900 9.19931 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.003186 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.142916 B = 8787.570130 C = 9613.221377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.168 4.168 4 C -0.023 4.023 5 C -0.214 4.214 6 C 0.558 3.442 7 O -0.575 6.575 8 N -0.584 5.584 9 C 0.099 3.901 10 C -0.111 4.111 11 C -0.079 4.079 12 H 0.062 0.938 13 C -0.122 4.122 14 C 0.149 3.851 15 N -0.614 5.614 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.058 4.058 19 N -0.943 5.943 20 Si 0.972 3.028 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.283 1.283 24 C 0.164 3.836 25 H 0.003 0.997 26 C 0.126 3.874 27 C 0.344 3.656 28 O -0.492 6.492 29 N -0.529 5.529 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.192 0.808 34 H 0.170 0.830 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.072 0.928 42 H -0.014 1.014 43 H 0.248 0.752 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.511 5.456 1.590 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.187 4.187 4 C -0.049 4.049 5 C -0.220 4.220 6 C 0.346 3.654 7 O -0.455 6.455 8 N -0.314 5.314 9 C -0.023 4.023 10 C -0.149 4.149 11 C -0.099 4.099 12 H 0.080 0.920 13 C -0.160 4.160 14 C 0.024 3.976 15 N -0.338 5.338 16 C -0.366 4.366 17 H 0.087 0.913 18 C -0.251 4.251 19 N -0.592 5.592 20 Si 0.800 3.200 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.056 3.944 25 H 0.021 0.979 26 C 0.000 4.000 27 C 0.165 3.835 28 O -0.301 6.301 29 N -0.250 5.250 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.209 0.791 34 H 0.188 0.812 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.004 0.996 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -27.368 4.369 0.583 27.720 hybrid contribution 2.443 -0.427 -0.176 2.486 sum -24.925 3.942 0.407 25.238 Atomic orbital electron populations 1.20958 0.85512 1.04955 1.04880 1.22021 0.98777 0.86947 0.89914 1.22351 0.93443 1.00798 1.02096 1.22063 0.95449 0.96305 0.91081 1.20778 0.92706 0.96198 1.12366 1.18503 0.87388 0.78502 0.80991 1.90798 1.71919 1.43351 1.39428 1.47045 1.06514 1.45647 1.32230 1.21405 0.97393 0.94822 0.88643 1.20423 0.93351 1.04705 0.96421 1.20424 0.95192 0.97606 0.96661 0.91991 1.23071 0.94558 0.96779 1.01642 1.21799 0.95555 0.93311 0.86943 1.45003 1.02505 1.55319 1.31016 1.19237 0.87972 1.23297 1.06069 0.91291 1.25497 0.99241 1.00385 1.00024 1.70026 1.19294 1.38051 1.31864 0.85255 0.78628 0.77620 0.78470 1.20596 1.21305 1.20908 1.20097 0.85225 0.95829 0.93245 0.97907 1.20882 0.79316 1.01018 0.98784 1.19174 0.86816 0.84505 0.92975 1.84734 1.76972 1.33218 1.35186 1.67145 1.08480 1.32417 1.16916 0.88112 0.87201 0.91122 0.79068 0.81236 0.87356 0.89759 0.90534 0.87354 0.89064 0.91379 0.91021 0.99568 0.94185 0.93029 0.93294 0.72395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 71.23 0.72 -0.01 16 2 C 0.16 2.36 6.78 42.58 0.29 2.65 16 3 C -0.17 -1.72 9.71 22.32 0.22 -1.50 16 4 C -0.02 -0.36 7.61 22.72 0.17 -0.19 16 5 C -0.21 -5.35 4.80 -19.91 -0.10 -5.45 16 6 C 0.56 18.67 6.87 86.69 0.60 19.27 16 7 O -0.58 -25.56 16.01 0.25 0.00 -25.55 16 8 N -0.58 -17.94 3.03 -841.34 -2.55 -20.49 16 9 C 0.10 1.95 5.15 85.84 0.44 2.39 16 10 C -0.11 -2.21 5.55 28.50 0.16 -2.05 16 11 C -0.08 -2.46 2.63 -11.99 -0.03 -2.49 16 12 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 13 C -0.12 -4.07 6.24 32.00 0.20 -3.87 16 14 C 0.15 7.16 5.91 86.88 0.51 7.67 16 15 N -0.61 -31.76 3.16 -675.18 -2.13 -33.89 16 16 C -0.24 -13.66 9.77 84.03 0.82 -12.84 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 19 N -0.94 -56.25 10.12 21.65 0.22 -56.03 16 20 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 24 C 0.16 6.84 3.29 43.60 0.14 6.98 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 C 0.13 5.08 5.46 86.13 0.47 5.56 16 27 C 0.34 9.19 7.75 85.13 0.66 9.85 16 28 O -0.49 -14.29 12.73 -82.92 -1.06 -15.35 16 29 N -0.53 -12.18 10.28 -296.08 -3.04 -15.23 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.14 8.07 -2.38 -0.02 0.12 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.17 1.78 7.25 -2.91 -0.02 1.76 16 35 H 0.11 1.56 4.87 -2.39 -0.01 1.55 16 36 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 38 H 0.11 1.55 7.65 -2.39 -0.02 1.54 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 41 H 0.07 3.94 5.91 -2.39 -0.01 3.93 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.05 2.27 8.07 -2.39 -0.02 2.25 16 45 H 0.05 2.32 6.84 -2.39 -0.02 2.30 16 46 H 0.42 8.24 9.06 -74.06 -0.67 7.56 16 Total: -1.00 -83.87 364.46 -0.45 -84.32 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.34 Total: 9.86 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 5.74 Total: 23.06 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -7.50 Total: -125.63 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.05 Total: -40.90 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -83.87 -0.45 -84.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -83.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds