Wall clock time and date at job start Tue Mar 31 2020 16:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38353 * 119.40954 * 2 1 4 4 C 1.38337 * 119.45976 * 179.71717 * 3 2 1 5 5 C 1.39989 * 118.34755 * 0.56352 * 4 3 2 6 6 C 1.47530 * 120.60028 * 179.70982 * 5 4 3 7 7 O 1.21583 * 119.99858 * 134.71503 * 6 5 4 8 8 N 1.34778 * 119.99568 * 314.71796 * 6 5 4 9 9 C 1.46630 * 119.78396 * 354.24388 * 8 6 5 10 10 C 1.53890 * 110.79635 * 227.68279 * 9 8 6 11 11 C 1.51985 * 107.29037 * 308.25369 * 10 9 8 12 12 H 1.08994 * 111.57426 * 303.14646 * 11 10 9 13 13 C 1.53704 * 114.99786 * 175.42891 * 11 10 9 14 14 C 1.55296 * 101.81329 * 206.55171 * 13 11 10 15 15 N 1.48158 * 107.04766 * 22.44353 * 14 13 11 16 16 C 1.36926 * 126.40056 * 184.96828 * 15 14 13 17 17 H 1.08000 * 120.00599 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00281 * 0.04044 * 16 15 14 19 19 N 1.31621 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00396 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47057 * 90.00446 * 20 18 16 22 22 H 1.48502 * 109.47395 * 209.99968 * 20 18 16 23 23 H 1.48498 * 109.47142 * 330.00489 * 20 18 16 24 24 C 1.45502 * 107.19981 * 5.00310 * 15 14 13 25 25 H 1.09000 * 109.56619 * 85.84275 * 24 15 14 26 26 C 1.47798 * 119.75062 * 174.38463 * 8 6 5 27 27 C 1.40289 * 118.80492 * 359.44277 * 5 4 3 28 28 O 1.35423 * 119.79900 * 180.27491 * 27 5 4 29 29 N 1.31882 * 119.40675 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47227 * 269.98333 * 1 2 3 31 31 H 1.08998 * 109.46861 * 29.98002 * 1 2 3 32 32 H 1.08998 * 109.46993 * 149.97548 * 1 2 3 33 33 H 1.07995 * 120.27177 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.83366 * 180.27691 * 4 3 2 35 35 H 1.09000 * 109.12974 * 107.37414 * 9 8 6 36 36 H 1.08999 * 109.20797 * 348.03878 * 9 8 6 37 37 H 1.09002 * 109.88963 * 188.81353 * 10 9 8 38 38 H 1.08994 * 109.95659 * 67.73580 * 10 9 8 39 39 H 1.08996 * 110.95759 * 88.41647 * 13 11 10 40 40 H 1.08993 * 110.95924 * 324.68298 * 13 11 10 41 41 H 1.09003 * 109.91739 * 263.09476 * 14 13 11 42 42 H 1.09003 * 109.91822 * 141.79717 * 14 13 11 43 43 H 0.96998 * 120.00298 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.06559 * 9.52828 * 26 8 6 45 45 H 1.09003 * 110.06575 * 248.07086 * 26 8 6 46 46 H 0.96700 * 114.00190 * 89.99731 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0059 5 6 4.2356 -0.0249 -0.0003 6 6 5.7098 -0.0816 -0.0008 7 8 6.2889 -0.8490 0.7435 8 7 6.4145 0.7174 -0.8264 9 6 5.7131 1.5484 -1.8100 10 6 6.3622 1.4164 -3.1990 11 6 7.8502 1.6750 -3.0286 12 1 8.0387 2.6497 -2.5788 13 6 8.6932 1.4789 -4.2988 14 6 10.0833 1.1218 -3.7058 15 7 9.8518 0.6051 -2.3367 16 6 10.8134 0.2636 -1.4237 17 1 10.5269 -0.1047 -0.4497 18 6 12.1567 0.3911 -1.7498 19 7 12.5060 0.8407 -2.9364 20 14 13.4685 -0.0741 -0.5040 21 1 13.8206 -1.5074 -0.6678 22 1 14.6771 0.7606 -0.7227 23 1 12.9507 0.1546 0.8689 24 6 8.4117 0.5276 -2.1439 25 1 8.0430 -0.4244 -2.5257 26 6 7.8894 0.7472 -0.7359 27 6 3.4757 -1.2042 -0.0004 28 8 4.0991 -2.4065 -0.0007 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6412 2.1375 0.0004 34 1 4.1225 2.1343 0.0106 35 1 5.7544 2.5901 -1.4919 36 1 4.6716 1.2322 -1.8690 37 1 5.9337 2.1517 -3.8800 38 1 6.2028 0.4116 -3.5902 39 1 8.7420 2.3996 -4.8802 40 1 8.3043 0.6587 -4.9021 41 1 10.7099 2.0129 -3.6655 42 1 10.5616 0.3556 -4.3160 43 1 13.4446 0.9302 -3.1642 44 1 8.2399 -0.0486 -0.0786 45 1 8.2215 1.7152 -0.3605 46 1 4.2803 -2.7558 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042246700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:18 Heat of formation + Delta-G solvation = -0.978978 kcal Electronic energy + Delta-G solvation = -29154.885224 eV Core-core repulsion = 25238.845090 eV Total energy + Delta-G solvation = -3916.040134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20633 -39.76189 -38.15671 -37.37370 -35.44826 -33.47779 -32.83985 -31.90047 -31.24922 -29.62514 -28.57234 -27.89842 -24.78785 -24.23244 -23.60382 -22.72621 -22.20768 -20.35123 -19.92897 -19.32028 -18.72931 -17.43903 -17.05956 -16.55246 -16.00531 -15.85713 -15.12546 -14.90586 -14.65853 -14.41253 -14.22310 -13.94171 -13.88901 -13.60409 -13.37040 -13.06520 -12.91269 -12.65555 -12.51644 -12.38387 -12.23849 -11.89886 -11.83493 -11.54252 -11.33222 -10.96557 -10.81662 -10.75943 -10.25065 -10.13846 -10.12855 -9.98141 -9.82122 -9.66987 -9.54837 -9.46999 -9.06536 -8.62368 -8.47569 -6.85219 -5.71309 -3.05058 0.41110 0.80531 2.65315 2.97861 3.22091 3.42414 3.47834 3.48858 3.49901 4.17046 4.30823 4.42124 4.51405 4.64278 4.84986 4.91394 4.97844 5.05043 5.13154 5.17830 5.23189 5.37519 5.43748 5.57087 5.59630 5.62634 5.66307 5.66869 5.76029 5.88682 6.00200 6.05308 6.10910 6.12633 6.16848 6.36041 6.47193 6.55391 6.68419 6.73632 7.05055 7.29629 7.46151 7.55804 7.59908 7.61526 7.81552 8.19783 8.24164 9.19601 9.82508 10.49237 11.41076 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.003157 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.557052 B = 8868.373606 C = 9732.637257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.191 4.191 4 C -0.027 4.027 5 C -0.199 4.199 6 C 0.567 3.433 7 O -0.530 6.530 8 N -0.598 5.598 9 C 0.105 3.895 10 C -0.119 4.119 11 C -0.114 4.114 12 H 0.078 0.922 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.592 5.592 16 C -0.228 4.228 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.156 3.844 25 H 0.025 0.975 26 C 0.118 3.882 27 C 0.368 3.632 28 O -0.471 6.471 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.252 0.748 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.924 4.620 3.032 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.211 4.211 4 C -0.053 4.053 5 C -0.205 4.205 6 C 0.353 3.647 7 O -0.407 6.407 8 N -0.331 5.331 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.133 4.133 12 H 0.096 0.904 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.047 3.953 25 H 0.042 0.958 26 C -0.004 4.004 27 C 0.188 3.812 28 O -0.279 6.279 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -23.744 3.444 2.847 24.161 hybrid contribution 1.338 0.436 0.958 1.702 sum -22.407 3.880 3.805 23.056 Atomic orbital electron populations 1.20814 0.88187 1.03973 1.03519 1.21245 0.97038 0.87217 0.91571 1.21888 0.94367 0.99580 1.05234 1.21791 0.94411 0.97173 0.91884 1.21118 0.95326 0.94521 1.09569 1.17851 0.85714 0.80220 0.80891 1.90780 1.70891 1.37741 1.41257 1.48180 1.07838 1.42467 1.34596 1.21919 0.96008 0.94637 0.89268 1.21797 0.96323 1.02384 0.95264 1.22285 0.92711 0.99942 0.98409 0.90405 1.22729 0.98663 1.00140 0.96098 1.21546 0.90328 0.98557 0.84244 1.44162 0.98347 1.76291 1.12871 1.19044 0.85498 1.36706 0.94351 0.90264 1.24783 0.96994 1.01423 0.97073 1.69942 1.15708 1.51622 1.19655 0.86138 0.81430 0.77893 0.80467 1.21575 1.21716 1.20584 1.20982 0.86757 0.95334 0.92213 0.95815 1.21765 0.75755 1.03022 0.99875 1.19041 0.86080 0.84957 0.91133 1.84656 1.76493 1.32228 1.34506 1.67105 1.09262 1.30461 1.15872 0.89882 0.90135 0.90092 0.83745 0.83566 0.91537 0.90372 0.90762 0.91351 0.92205 0.92562 0.92585 0.94425 0.93759 0.88797 0.90911 0.72951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.53 6.78 -82.53 -0.56 0.97 16 3 C -0.19 -1.46 9.71 -39.50 -0.38 -1.84 16 4 C -0.03 -0.25 7.67 -38.89 -0.30 -0.55 16 5 C -0.20 -2.59 4.86 -104.68 -0.51 -3.10 16 6 C 0.57 9.23 7.02 -12.47 -0.09 9.14 16 7 O -0.53 -10.38 15.75 -7.12 -0.11 -10.49 16 8 N -0.60 -9.33 3.02 -173.94 -0.52 -9.86 16 9 C 0.10 1.25 4.92 -3.51 -0.02 1.23 16 10 C -0.12 -1.56 5.72 -26.78 -0.15 -1.71 16 11 C -0.11 -1.91 2.61 -89.51 -0.23 -2.15 16 12 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 13 C -0.14 -2.51 6.54 -25.15 -0.16 -2.68 16 14 C 0.18 4.26 5.45 -1.91 -0.01 4.25 16 15 N -0.59 -14.96 3.35 -162.91 -0.55 -15.51 16 16 C -0.23 -6.33 9.88 -15.06 -0.15 -6.48 16 17 H 0.08 2.16 7.41 -52.49 -0.39 1.77 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -27.05 10.44 55.49 0.58 -26.48 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.16 3.24 2.77 -67.82 -0.19 3.05 16 25 H 0.02 0.55 7.90 -51.93 -0.41 0.14 16 26 C 0.12 2.23 5.70 -3.95 -0.02 2.21 16 27 C 0.37 4.99 7.74 -16.61 -0.13 4.86 16 28 O -0.47 -6.61 12.50 -30.38 -0.38 -6.99 16 29 N -0.51 -6.23 10.28 -9.21 -0.09 -6.33 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.15 1.10 7.03 -52.48 -0.37 0.73 16 35 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 36 H 0.08 0.82 5.18 -51.93 -0.27 0.55 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 41 H 0.06 1.48 7.21 -51.93 -0.37 1.10 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 2.02 6.74 -51.93 -0.35 1.67 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.41 4.24 9.06 45.56 0.41 4.65 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -34.54 364.91 -9.15 -43.70 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.92 Total: 2.38 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -2.63 Total: 6.69 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.59 Total: -58.16 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.49 Total: -17.49 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.54 -9.15 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.719 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds