Wall clock time and date at job start Tue Mar 31 2020 16:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38353 * 119.40954 * 2 1 4 4 C 1.38337 * 119.45976 * 179.71717 * 3 2 1 5 5 C 1.39989 * 118.34755 * 0.56352 * 4 3 2 6 6 C 1.47530 * 120.60028 * 179.70982 * 5 4 3 7 7 O 1.21583 * 119.99858 * 134.71503 * 6 5 4 8 8 N 1.34778 * 119.99568 * 314.71796 * 6 5 4 9 9 C 1.46630 * 119.78396 * 354.24388 * 8 6 5 10 10 C 1.53890 * 110.79635 * 227.68279 * 9 8 6 11 11 C 1.51985 * 107.29037 * 308.25369 * 10 9 8 12 12 H 1.08994 * 111.57426 * 303.14646 * 11 10 9 13 13 C 1.53704 * 114.99786 * 175.42891 * 11 10 9 14 14 C 1.55296 * 101.81329 * 206.55171 * 13 11 10 15 15 N 1.48158 * 107.04766 * 22.44353 * 14 13 11 16 16 C 1.36926 * 126.40056 * 184.96828 * 15 14 13 17 17 H 1.08000 * 120.00599 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00281 * 0.04044 * 16 15 14 19 19 N 1.31621 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00396 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47057 * 90.00446 * 20 18 16 22 22 H 1.48502 * 109.47395 * 209.99968 * 20 18 16 23 23 H 1.48498 * 109.47142 * 330.00489 * 20 18 16 24 24 C 1.45502 * 107.19981 * 5.00310 * 15 14 13 25 25 H 1.09000 * 109.56619 * 85.84275 * 24 15 14 26 26 C 1.47798 * 119.75062 * 174.38463 * 8 6 5 27 27 C 1.40289 * 118.80492 * 359.44277 * 5 4 3 28 28 O 1.35423 * 119.79900 * 180.27491 * 27 5 4 29 29 N 1.31882 * 119.40675 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47227 * 269.98333 * 1 2 3 31 31 H 1.08998 * 109.46861 * 29.98002 * 1 2 3 32 32 H 1.08998 * 109.46993 * 149.97548 * 1 2 3 33 33 H 1.07995 * 120.27177 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.83366 * 180.27691 * 4 3 2 35 35 H 1.09000 * 109.12974 * 107.37414 * 9 8 6 36 36 H 1.08999 * 109.20797 * 348.03878 * 9 8 6 37 37 H 1.09002 * 109.88963 * 188.81353 * 10 9 8 38 38 H 1.08994 * 109.95659 * 67.73580 * 10 9 8 39 39 H 1.08996 * 110.95759 * 88.41647 * 13 11 10 40 40 H 1.08993 * 110.95924 * 324.68298 * 13 11 10 41 41 H 1.09003 * 109.91739 * 263.09476 * 14 13 11 42 42 H 1.09003 * 109.91822 * 141.79717 * 14 13 11 43 43 H 0.96998 * 120.00298 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.06559 * 9.52828 * 26 8 6 45 45 H 1.09003 * 110.06575 * 248.07086 * 26 8 6 46 46 H 0.96700 * 114.00190 * 89.99731 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0059 5 6 4.2356 -0.0249 -0.0003 6 6 5.7098 -0.0816 -0.0008 7 8 6.2889 -0.8490 0.7435 8 7 6.4145 0.7174 -0.8264 9 6 5.7131 1.5484 -1.8100 10 6 6.3622 1.4164 -3.1990 11 6 7.8502 1.6750 -3.0286 12 1 8.0387 2.6497 -2.5788 13 6 8.6932 1.4789 -4.2988 14 6 10.0833 1.1218 -3.7058 15 7 9.8518 0.6051 -2.3367 16 6 10.8134 0.2636 -1.4237 17 1 10.5269 -0.1047 -0.4497 18 6 12.1567 0.3911 -1.7498 19 7 12.5060 0.8407 -2.9364 20 14 13.4685 -0.0741 -0.5040 21 1 13.8206 -1.5074 -0.6678 22 1 14.6771 0.7606 -0.7227 23 1 12.9507 0.1546 0.8689 24 6 8.4117 0.5276 -2.1439 25 1 8.0430 -0.4244 -2.5257 26 6 7.8894 0.7472 -0.7359 27 6 3.4757 -1.2042 -0.0004 28 8 4.0991 -2.4065 -0.0007 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6412 2.1375 0.0004 34 1 4.1225 2.1343 0.0106 35 1 5.7544 2.5901 -1.4919 36 1 4.6716 1.2322 -1.8690 37 1 5.9337 2.1517 -3.8800 38 1 6.2028 0.4116 -3.5902 39 1 8.7420 2.3996 -4.8802 40 1 8.3043 0.6587 -4.9021 41 1 10.7099 2.0129 -3.6655 42 1 10.5616 0.3556 -4.3160 43 1 13.4446 0.9302 -3.1642 44 1 8.2399 -0.0486 -0.0786 45 1 8.2215 1.7152 -0.3605 46 1 4.2803 -2.7558 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042246700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:17 Heat of formation + Delta-G solvation = -27.327285 kcal Electronic energy + Delta-G solvation = -29156.027772 eV Core-core repulsion = 25238.845090 eV Total energy + Delta-G solvation = -3917.182682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18129 -40.97319 -39.55036 -38.33261 -36.90422 -34.80540 -34.16255 -32.89694 -32.61837 -31.03324 -30.20334 -28.77193 -26.57886 -25.61659 -24.47713 -23.77487 -23.37758 -21.83742 -21.54745 -20.62755 -19.64462 -18.79198 -18.29487 -17.95786 -17.14185 -16.94535 -16.75510 -16.16314 -15.91862 -15.75589 -15.55093 -15.12162 -14.93179 -14.79100 -14.58520 -14.34641 -13.89955 -13.84667 -13.63687 -13.53658 -13.18869 -13.14818 -13.07319 -12.93151 -12.76356 -12.68761 -12.55260 -12.15929 -12.02290 -11.79154 -11.56603 -11.45599 -11.30565 -11.06132 -10.82616 -10.75217 -10.49220 -9.89447 -9.72253 -8.93506 -7.88418 -5.23531 -0.41112 0.07111 1.42138 1.43793 1.50302 1.52844 1.83013 2.39187 2.47319 2.67267 3.24450 3.29778 3.47508 3.61360 3.69346 3.79276 3.89899 3.94934 3.98828 4.21180 4.23749 4.26522 4.33412 4.42504 4.49401 4.58844 4.68873 4.71333 4.78957 4.84395 4.85056 4.88398 4.93998 5.04286 5.07397 5.12203 5.16999 5.21638 5.34207 5.46735 5.52975 5.56841 5.64020 5.76253 6.16808 6.27092 6.43812 6.81832 6.97842 7.05969 7.73991 8.41142 9.22608 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.003157 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.557052 B = 8868.373606 C = 9732.637257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.170 4.170 4 C -0.020 4.020 5 C -0.217 4.217 6 C 0.562 3.438 7 O -0.579 6.579 8 N -0.596 5.596 9 C 0.100 3.900 10 C -0.112 4.112 11 C -0.095 4.095 12 H 0.085 0.915 13 C -0.123 4.123 14 C 0.180 3.820 15 N -0.612 5.612 16 C -0.238 4.238 17 H 0.075 0.925 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.972 3.028 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.271 1.271 24 C 0.147 3.853 25 H -0.002 1.002 26 C 0.131 3.869 27 C 0.344 3.656 28 O -0.495 6.495 29 N -0.531 5.531 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.192 0.808 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.027 0.973 42 H -0.003 1.003 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.795 7.634 2.949 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.189 4.189 4 C -0.045 4.045 5 C -0.224 4.224 6 C 0.351 3.649 7 O -0.459 6.459 8 N -0.328 5.328 9 C -0.021 4.021 10 C -0.150 4.150 11 C -0.114 4.114 12 H 0.103 0.897 13 C -0.161 4.161 14 C 0.056 3.944 15 N -0.337 5.337 16 C -0.367 4.367 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.801 3.199 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.195 1.195 24 C 0.039 3.961 25 H 0.016 0.984 26 C 0.008 3.992 27 C 0.166 3.834 28 O -0.305 6.305 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.210 0.790 34 H 0.190 0.810 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.015 0.985 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -27.677 6.476 2.755 28.558 hybrid contribution 2.420 -0.540 0.990 2.669 sum -25.257 5.936 3.745 26.214 Atomic orbital electron populations 1.20963 0.85548 1.05141 1.04679 1.22039 0.98782 0.86994 0.89806 1.22362 0.93538 1.00746 1.02219 1.22113 0.95385 0.96374 0.90669 1.20856 0.92833 0.96098 1.12605 1.18447 0.87279 0.79183 0.80004 1.90744 1.72222 1.39696 1.43233 1.48220 1.06193 1.43002 1.35417 1.22280 0.96466 0.95843 0.87541 1.21806 0.93204 1.03023 0.96943 1.22215 0.95089 0.98149 0.95964 0.89651 1.22607 0.94863 1.01752 0.96864 1.21369 0.93495 0.95854 0.83688 1.44431 1.00136 1.76093 1.13081 1.19310 0.86541 1.36085 0.94726 0.90726 1.25562 0.98917 1.02099 0.98904 1.70145 1.15555 1.52848 1.21174 0.85172 0.78806 0.77197 0.78774 1.21734 1.21477 1.19542 1.21110 0.84573 0.96049 0.94399 0.98440 1.21323 0.78410 1.01674 0.97809 1.19213 0.86820 0.84747 0.92667 1.84601 1.76992 1.33292 1.35573 1.67150 1.08569 1.32506 1.16981 0.88542 0.86919 0.90999 0.79037 0.80987 0.88009 0.88043 0.86340 0.92704 0.89160 0.91736 0.95514 0.98506 0.94305 0.92557 0.90512 0.72142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.16 71.24 0.72 -0.02 16 2 C 0.16 2.37 6.78 42.58 0.29 2.66 16 3 C -0.17 -1.68 9.71 22.32 0.22 -1.47 16 4 C -0.02 -0.29 7.67 22.72 0.17 -0.12 16 5 C -0.22 -5.38 4.86 -19.90 -0.10 -5.48 16 6 C 0.56 18.47 7.02 86.69 0.61 19.08 16 7 O -0.58 -24.06 15.75 7.89 0.12 -23.94 16 8 N -0.60 -18.10 3.02 -822.49 -2.48 -20.58 16 9 C 0.10 1.98 4.92 86.65 0.43 2.41 16 10 C -0.11 -2.48 5.72 30.56 0.17 -2.30 16 11 C -0.09 -2.99 2.61 -10.07 -0.03 -3.02 16 12 H 0.09 2.64 8.13 -2.39 -0.02 2.62 16 13 C -0.12 -4.31 6.54 31.62 0.21 -4.11 16 14 C 0.18 9.00 5.45 86.85 0.47 9.47 16 15 N -0.61 -32.30 3.35 -669.32 -2.24 -34.54 16 16 C -0.24 -13.81 9.88 84.04 0.83 -12.98 16 17 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 18 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 19 N -0.95 -58.06 10.44 21.65 0.23 -57.84 16 20 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.15 6.23 2.77 45.60 0.13 6.35 16 25 H 0.00 -0.09 7.90 -2.39 -0.02 -0.11 16 26 C 0.13 5.11 5.70 85.73 0.49 5.60 16 27 C 0.34 9.32 7.74 85.13 0.66 9.98 16 28 O -0.49 -14.81 12.50 -75.31 -0.94 -15.76 16 29 N -0.53 -12.40 10.28 -296.06 -3.04 -15.44 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.09 8.07 -2.39 -0.02 0.07 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 34 H 0.17 1.61 7.03 -2.91 -0.02 1.59 16 35 H 0.10 1.41 8.01 -2.39 -0.02 1.39 16 36 H 0.10 1.64 5.18 -2.39 -0.01 1.62 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.41 7.97 -2.39 -0.02 1.39 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 41 H 0.03 1.46 7.21 -2.39 -0.02 1.45 16 42 H 0.00 -0.19 7.77 -2.39 -0.02 -0.21 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.06 2.59 6.74 -2.39 -0.02 2.58 16 45 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.42 9.76 9.06 -74.06 -0.67 9.09 16 Total: -1.00 -83.70 364.91 -0.25 -83.95 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.34 Total: 11.63 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 5.74 Total: 22.91 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -7.54 Total: -128.40 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.82 Total: -39.69 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -83.70 -0.25 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.622 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds