Wall clock time and date at job start Tue Mar 31 2020 16:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38354 * 119.40703 * 2 1 4 4 C 1.38341 * 119.45820 * 179.76831 * 3 2 1 5 5 C 1.39985 * 118.34582 * 0.49683 * 4 3 2 6 6 C 1.47532 * 120.59547 * 179.78209 * 5 4 3 7 7 O 1.21591 * 119.99968 * 210.71219 * 6 5 4 8 8 N 1.34777 * 119.99575 * 30.71106 * 6 5 4 9 9 C 1.47150 * 121.22452 * 4.74427 * 8 6 5 10 10 C 1.52836 * 107.97738 * 122.72446 * 9 8 6 11 11 C 1.53085 * 110.58563 * 57.34310 * 10 9 8 12 12 H 1.09000 * 112.49120 * 70.57576 * 11 10 9 13 13 C 1.56489 * 106.41795 * 195.41659 * 11 10 9 14 14 C 1.54500 * 102.40141 * 78.36282 * 13 11 10 15 15 N 1.47430 * 107.29751 * 22.91129 * 14 13 11 16 16 C 1.36942 * 126.05742 * 181.51937 * 15 14 13 17 17 H 1.08001 * 120.00202 * 173.92775 * 16 15 14 18 18 C 1.38820 * 119.99913 * 353.92421 * 16 15 14 19 19 N 1.31612 * 119.99632 * 352.55984 * 18 16 15 20 20 Si 1.86802 * 119.99703 * 172.55897 * 18 16 15 21 21 H 1.48500 * 109.46964 * 94.99148 * 20 18 16 22 22 H 1.48494 * 109.46841 * 214.99046 * 20 18 16 23 23 H 1.48501 * 109.47222 * 334.99442 * 20 18 16 24 24 C 1.46468 * 107.88356 * 1.51436 * 15 14 13 25 25 H 1.08997 * 108.42365 * 89.26352 * 24 15 14 26 26 C 1.46758 * 121.21589 * 184.76823 * 8 6 5 27 27 C 1.40278 * 118.81076 * 359.50827 * 5 4 3 28 28 O 1.35425 * 119.80259 * 180.27663 * 27 5 4 29 29 N 1.31884 * 119.40734 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47281 * 269.97376 * 1 2 3 31 31 H 1.08996 * 109.47753 * 29.97710 * 1 2 3 32 32 H 1.09003 * 109.47239 * 149.98184 * 1 2 3 33 33 H 1.07997 * 120.27494 * 0.04713 * 3 2 1 34 34 H 1.07996 * 120.82288 * 180.25521 * 4 3 2 35 35 H 1.09000 * 109.76136 * 242.34335 * 9 8 6 36 36 H 1.08999 * 109.76353 * 3.04903 * 9 8 6 37 37 H 1.08999 * 109.25516 * 177.63103 * 10 9 8 38 38 H 1.08999 * 109.25111 * 297.09150 * 10 9 8 39 39 H 1.09000 * 110.91003 * 320.14139 * 13 11 10 40 40 H 1.09000 * 110.85022 * 196.56011 * 13 11 10 41 41 H 1.08993 * 109.90524 * 263.43889 * 14 13 11 42 42 H 1.09006 * 109.90068 * 142.37955 * 14 13 11 43 43 H 0.97006 * 119.99780 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.22702 * 112.20216 * 26 8 6 45 45 H 1.09000 * 109.22969 * 352.84284 * 26 8 6 46 46 H 0.96700 * 114.00228 * 90.00127 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2354 -0.0249 -0.0010 6 6 5.7097 -0.0814 -0.0010 7 8 6.2826 -1.0068 -0.5433 8 7 6.4214 0.8926 0.6000 9 6 5.7574 1.9691 1.3522 10 6 6.3067 1.9560 2.7784 11 6 7.8285 2.1217 2.7706 12 1 8.1371 3.1265 2.4821 13 6 8.3264 1.7013 4.1934 14 6 8.2946 0.1587 4.1138 15 7 8.3744 -0.2084 2.6881 16 6 8.3461 -1.4799 2.1804 17 1 8.3126 -1.6341 1.1120 18 6 8.3606 -2.5706 3.0390 19 7 8.5488 -2.3900 4.3291 20 14 8.1131 -4.2944 2.3634 21 1 9.4353 -4.9227 2.1136 22 1 7.3565 -5.1082 3.3484 23 1 7.3509 -4.2227 1.0909 24 6 8.4891 1.0279 1.9111 25 1 9.5459 1.2747 1.8104 26 6 7.8869 0.9188 0.5277 27 6 3.4757 -1.2041 -0.0010 28 8 4.0991 -2.4064 -0.0010 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6411 2.1375 0.0008 34 1 4.1222 2.1344 0.0091 35 1 5.9695 2.9305 0.8844 36 1 4.6812 1.7972 1.3693 37 1 5.8590 2.7736 3.3434 38 1 6.0511 1.0088 3.2533 39 1 7.6475 2.0628 4.9657 40 1 9.3409 2.0586 4.3706 41 1 7.3649 -0.2158 4.5419 42 1 9.1455 -0.2583 4.6525 43 1 8.5585 -3.1521 4.9291 44 1 8.2017 1.7749 -0.0693 45 1 8.2394 0.0027 0.0539 46 1 4.2801 -2.7556 0.8824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042246701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:22 Heat of formation + Delta-G solvation = 14.948258 kcal Electronic energy + Delta-G solvation = -30374.055569 eV Core-core repulsion = 26458.706092 eV Total energy + Delta-G solvation = -3915.349477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98688 -39.58916 -37.90419 -37.07263 -35.13610 -33.24045 -32.80690 -31.66898 -31.10787 -29.34878 -28.42880 -27.79437 -24.77586 -24.22740 -23.58763 -22.73081 -22.21979 -20.28062 -19.97013 -18.67211 -18.25735 -17.17525 -16.78241 -16.53501 -16.00788 -15.37685 -14.95717 -14.71008 -14.54772 -14.32157 -14.03807 -13.95428 -13.78096 -13.42752 -13.08852 -12.82458 -12.70236 -12.56812 -12.31403 -12.14652 -12.02706 -11.56608 -11.49575 -11.41094 -11.25289 -10.93994 -10.75606 -10.71820 -10.09639 -10.00192 -9.90236 -9.82903 -9.74785 -9.58309 -9.48030 -9.15828 -8.80990 -8.53174 -8.13954 -6.74929 -5.62876 -2.96131 0.64510 1.01769 3.03947 3.23096 3.47296 3.54420 3.58798 3.64065 3.79214 4.42437 4.48698 4.59366 4.67263 4.83754 5.00404 5.04767 5.18006 5.22443 5.30435 5.34587 5.43038 5.44240 5.48137 5.64743 5.69571 5.72840 5.75193 5.82851 5.85885 5.94893 6.00788 6.10183 6.22537 6.27046 6.34705 6.41063 6.44327 6.60359 6.71779 6.89313 7.06045 7.51097 7.60203 7.72429 7.81194 7.87919 7.92865 8.31533 8.62976 9.29954 9.91340 10.55571 11.48461 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.005415 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.769522 B = 5169.960104 C = 6565.142395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.197 4.197 4 C -0.039 4.039 5 C -0.196 4.196 6 C 0.565 3.435 7 O -0.506 6.506 8 N -0.589 5.589 9 C 0.089 3.911 10 C -0.122 4.122 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.142 4.142 14 C 0.174 3.826 15 N -0.587 5.587 16 C -0.214 4.214 17 H 0.084 0.916 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.898 3.102 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.153 3.847 25 H 0.027 0.973 26 C 0.115 3.885 27 C 0.374 3.626 28 O -0.461 6.461 29 N -0.510 5.510 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 14.170 -4.832 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.217 4.217 4 C -0.065 4.065 5 C -0.203 4.203 6 C 0.351 3.649 7 O -0.381 6.381 8 N -0.323 5.323 9 C -0.034 4.034 10 C -0.160 4.160 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.180 4.180 14 C 0.050 3.950 15 N -0.312 5.312 16 C -0.342 4.342 17 H 0.102 0.898 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.728 3.272 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.197 1.197 24 C 0.045 3.955 25 H 0.044 0.956 26 C -0.008 4.008 27 C 0.195 3.805 28 O -0.269 6.269 29 N -0.230 5.230 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.911 12.623 -5.650 18.919 hybrid contribution 0.478 -0.277 0.470 0.726 sum -12.432 12.346 -5.179 18.271 Atomic orbital electron populations 1.20795 0.88405 1.03747 1.03444 1.21214 0.96924 0.87337 0.91750 1.21858 0.94443 0.99420 1.05951 1.22054 0.94452 0.97618 0.92353 1.21175 0.95692 0.94285 1.09143 1.17645 0.85497 0.82054 0.79698 1.90843 1.70835 1.31848 1.44538 1.47663 1.07097 1.25792 1.51708 1.22329 0.98054 0.90105 0.92928 1.21833 0.95837 1.02834 0.95545 1.22459 0.94765 0.97716 0.97251 0.90596 1.23211 0.99617 0.99894 0.95294 1.21240 1.00610 0.87265 0.85925 1.44267 1.85860 0.99994 1.01084 1.19115 1.42307 0.80611 0.92155 0.89789 1.24705 1.02585 0.97592 0.95546 1.69967 1.56513 1.28854 1.01934 0.86271 0.77990 0.84702 0.78212 1.21831 1.21989 1.19743 1.20677 0.96094 0.88300 0.90439 0.95593 1.21418 0.78404 1.02701 0.98313 1.19130 0.85937 0.85283 0.90177 1.84732 1.76319 1.31837 1.34000 1.67127 1.09468 1.30385 1.16050 0.89936 0.90323 0.90214 0.83992 0.82791 0.91518 0.89044 0.92021 0.90313 0.92362 0.92563 0.95455 0.92515 0.94118 0.92587 0.88477 0.73185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.16 36.00 0.37 -0.46 16 2 C 0.17 1.94 6.78 -82.53 -0.56 1.38 16 3 C -0.20 -1.94 9.71 -39.50 -0.38 -2.32 16 4 C -0.04 -0.46 7.55 -38.89 -0.29 -0.75 16 5 C -0.20 -3.17 5.51 -104.69 -0.58 -3.75 16 6 C 0.56 10.82 7.36 -12.47 -0.09 10.73 16 7 O -0.51 -11.87 15.16 -13.48 -0.20 -12.08 16 8 N -0.59 -10.01 2.97 -175.32 -0.52 -10.53 16 9 C 0.09 1.14 4.88 -3.77 -0.02 1.12 16 10 C -0.12 -1.78 5.05 -26.77 -0.14 -1.91 16 11 C -0.10 -1.61 3.68 -88.18 -0.32 -1.94 16 12 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.14 -2.49 6.36 -24.07 -0.15 -2.64 16 14 C 0.17 4.08 4.65 -2.75 -0.01 4.07 16 15 N -0.59 -14.29 3.20 -164.42 -0.53 -14.82 16 16 C -0.21 -5.91 9.71 -15.05 -0.15 -6.06 16 17 H 0.08 2.40 6.36 -52.49 -0.33 2.07 16 18 C -0.01 -0.25 5.45 -17.43 -0.10 -0.35 16 19 N -0.92 -27.30 10.53 55.49 0.58 -26.71 16 20 Si 0.90 23.10 29.56 -169.99 -5.02 18.08 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 23 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.15 2.98 2.97 -68.30 -0.20 2.78 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 C 0.11 2.08 5.68 -4.77 -0.03 2.06 16 27 C 0.37 6.46 7.74 -16.61 -0.13 6.33 16 28 O -0.46 -8.68 12.10 -36.73 -0.44 -9.13 16 29 N -0.51 -7.85 10.28 -9.21 -0.09 -7.95 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.40 5.61 -52.49 -0.29 1.11 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.05 3.90 -51.93 -0.20 0.85 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.46 6.85 -51.93 -0.36 1.10 16 39 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.71 7.56 -51.93 -0.39 0.31 16 42 H 0.06 1.52 7.07 -51.93 -0.37 1.15 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 2.10 5.51 -51.93 -0.29 1.81 16 46 H 0.41 6.55 9.06 45.56 0.41 6.97 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -35.47 357.84 -9.21 -44.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.59 Total: 4.77 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -2.78 Total: 8.28 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.56 Total: -60.00 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.65 Total: -21.20 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.47 -9.21 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.631 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds