Wall clock time and date at job start Tue Mar 31 2020 16:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38354 * 119.40703 * 2 1 4 4 C 1.38341 * 119.45820 * 179.76831 * 3 2 1 5 5 C 1.39985 * 118.34582 * 0.49683 * 4 3 2 6 6 C 1.47532 * 120.59547 * 179.78209 * 5 4 3 7 7 O 1.21591 * 119.99968 * 210.71219 * 6 5 4 8 8 N 1.34777 * 119.99575 * 30.71106 * 6 5 4 9 9 C 1.47150 * 121.22452 * 4.74427 * 8 6 5 10 10 C 1.52836 * 107.97738 * 122.72446 * 9 8 6 11 11 C 1.53085 * 110.58563 * 57.34310 * 10 9 8 12 12 H 1.09000 * 112.49120 * 70.57576 * 11 10 9 13 13 C 1.56489 * 106.41795 * 195.41659 * 11 10 9 14 14 C 1.54500 * 102.40141 * 78.36282 * 13 11 10 15 15 N 1.47430 * 107.29751 * 22.91129 * 14 13 11 16 16 C 1.36942 * 126.05742 * 181.51937 * 15 14 13 17 17 H 1.08001 * 120.00202 * 173.92775 * 16 15 14 18 18 C 1.38820 * 119.99913 * 353.92421 * 16 15 14 19 19 N 1.31612 * 119.99632 * 352.55984 * 18 16 15 20 20 Si 1.86802 * 119.99703 * 172.55897 * 18 16 15 21 21 H 1.48500 * 109.46964 * 94.99148 * 20 18 16 22 22 H 1.48494 * 109.46841 * 214.99046 * 20 18 16 23 23 H 1.48501 * 109.47222 * 334.99442 * 20 18 16 24 24 C 1.46468 * 107.88356 * 1.51436 * 15 14 13 25 25 H 1.08997 * 108.42365 * 89.26352 * 24 15 14 26 26 C 1.46758 * 121.21589 * 184.76823 * 8 6 5 27 27 C 1.40278 * 118.81076 * 359.50827 * 5 4 3 28 28 O 1.35425 * 119.80259 * 180.27663 * 27 5 4 29 29 N 1.31884 * 119.40734 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47281 * 269.97376 * 1 2 3 31 31 H 1.08996 * 109.47753 * 29.97710 * 1 2 3 32 32 H 1.09003 * 109.47239 * 149.98184 * 1 2 3 33 33 H 1.07997 * 120.27494 * 0.04713 * 3 2 1 34 34 H 1.07996 * 120.82288 * 180.25521 * 4 3 2 35 35 H 1.09000 * 109.76136 * 242.34335 * 9 8 6 36 36 H 1.08999 * 109.76353 * 3.04903 * 9 8 6 37 37 H 1.08999 * 109.25516 * 177.63103 * 10 9 8 38 38 H 1.08999 * 109.25111 * 297.09150 * 10 9 8 39 39 H 1.09000 * 110.91003 * 320.14139 * 13 11 10 40 40 H 1.09000 * 110.85022 * 196.56011 * 13 11 10 41 41 H 1.08993 * 109.90524 * 263.43889 * 14 13 11 42 42 H 1.09006 * 109.90068 * 142.37955 * 14 13 11 43 43 H 0.97006 * 119.99780 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.22702 * 112.20216 * 26 8 6 45 45 H 1.09000 * 109.22969 * 352.84284 * 26 8 6 46 46 H 0.96700 * 114.00228 * 90.00127 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2354 -0.0249 -0.0010 6 6 5.7097 -0.0814 -0.0010 7 8 6.2826 -1.0068 -0.5433 8 7 6.4214 0.8926 0.6000 9 6 5.7574 1.9691 1.3522 10 6 6.3067 1.9560 2.7784 11 6 7.8285 2.1217 2.7706 12 1 8.1371 3.1265 2.4821 13 6 8.3264 1.7013 4.1934 14 6 8.2946 0.1587 4.1138 15 7 8.3744 -0.2084 2.6881 16 6 8.3461 -1.4799 2.1804 17 1 8.3126 -1.6341 1.1120 18 6 8.3606 -2.5706 3.0390 19 7 8.5488 -2.3900 4.3291 20 14 8.1131 -4.2944 2.3634 21 1 9.4353 -4.9227 2.1136 22 1 7.3565 -5.1082 3.3484 23 1 7.3509 -4.2227 1.0909 24 6 8.4891 1.0279 1.9111 25 1 9.5459 1.2747 1.8104 26 6 7.8869 0.9188 0.5277 27 6 3.4757 -1.2041 -0.0010 28 8 4.0991 -2.4064 -0.0010 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6411 2.1375 0.0008 34 1 4.1222 2.1344 0.0091 35 1 5.9695 2.9305 0.8844 36 1 4.6812 1.7972 1.3693 37 1 5.8590 2.7736 3.3434 38 1 6.0511 1.0088 3.2533 39 1 7.6475 2.0628 4.9657 40 1 9.3409 2.0586 4.3706 41 1 7.3649 -0.2158 4.5419 42 1 9.1455 -0.2583 4.6525 43 1 8.5585 -3.1521 4.9291 44 1 8.2017 1.7749 -0.0693 45 1 8.2394 0.0027 0.0539 46 1 4.2801 -2.7556 0.8824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042246701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:21 Heat of formation + Delta-G solvation = -12.984722 kcal Electronic energy + Delta-G solvation = -30375.266834 eV Core-core repulsion = 26458.706092 eV Total energy + Delta-G solvation = -3916.560742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14152 -40.90451 -39.36809 -38.34438 -36.63391 -34.73752 -34.23141 -32.73891 -32.61538 -30.80579 -30.08881 -28.79657 -26.53477 -25.71213 -24.75548 -23.94058 -23.33215 -21.75501 -21.57264 -20.04700 -19.54948 -18.49054 -18.33878 -17.93899 -17.20162 -16.98060 -16.47817 -16.07997 -15.90976 -15.65957 -15.54565 -15.32901 -14.88921 -14.65709 -14.34035 -14.24540 -13.93545 -13.76642 -13.58789 -13.27432 -13.22178 -12.98166 -12.96553 -12.79036 -12.68688 -12.65895 -12.51748 -12.35669 -12.06758 -11.64084 -11.39294 -11.34886 -11.16066 -11.12336 -10.73555 -10.67780 -10.35178 -9.88267 -9.46492 -8.79931 -7.84563 -5.15400 -0.40773 0.05518 1.33202 1.35582 1.50370 1.74633 2.06357 2.43297 2.46953 2.71234 3.32395 3.37082 3.55762 3.65877 3.72359 3.87715 3.92065 3.95016 4.11442 4.24662 4.29677 4.39592 4.48243 4.49356 4.59669 4.65044 4.68293 4.72911 4.82253 4.84915 4.88873 4.93038 5.01612 5.02342 5.12833 5.15835 5.17062 5.31826 5.52501 5.54707 5.64244 5.70044 5.73201 5.81111 6.23684 6.37469 6.51657 6.82524 7.14450 7.25862 7.83312 8.45949 9.24991 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.005415 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.769522 B = 5169.960104 C = 6565.142395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.157 3.843 3 C -0.171 4.171 4 C -0.030 4.030 5 C -0.220 4.220 6 C 0.555 3.445 7 O -0.570 6.570 8 N -0.588 5.588 9 C 0.084 3.916 10 C -0.120 4.120 11 C -0.083 4.083 12 H 0.128 0.872 13 C -0.128 4.128 14 C 0.181 3.819 15 N -0.604 5.604 16 C -0.200 4.200 17 H 0.067 0.933 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.948 3.052 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.140 3.860 25 H 0.025 0.975 26 C 0.118 3.882 27 C 0.338 3.662 28 O -0.490 6.490 29 N -0.537 5.537 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.067 0.933 41 H -0.010 1.010 42 H 0.012 0.988 43 H 0.242 0.758 44 H 0.100 0.900 45 H 0.049 0.951 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 19.848 -5.268 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.019 3.981 3 C -0.190 4.190 4 C -0.055 4.055 5 C -0.227 4.227 6 C 0.344 3.656 7 O -0.450 6.450 8 N -0.320 5.320 9 C -0.036 4.036 10 C -0.158 4.158 11 C -0.102 4.102 12 H 0.146 0.854 13 C -0.166 4.166 14 C 0.056 3.944 15 N -0.329 5.329 16 C -0.330 4.330 17 H 0.085 0.915 18 C -0.255 4.255 19 N -0.599 5.599 20 Si 0.779 3.221 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.033 3.967 25 H 0.042 0.958 26 C -0.006 4.006 27 C 0.159 3.841 28 O -0.298 6.298 29 N -0.258 5.258 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.215 0.785 34 H 0.208 0.792 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.030 0.970 43 H 0.051 0.949 44 H 0.118 0.882 45 H 0.067 0.933 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -15.459 18.374 -6.084 24.771 hybrid contribution 1.177 -1.944 0.569 2.343 sum -14.282 16.430 -5.516 22.458 Atomic orbital electron populations 1.20958 0.85414 1.05076 1.04708 1.22118 0.98894 0.87105 0.90030 1.22439 0.93670 1.00704 1.02228 1.22452 0.95475 0.96745 0.90816 1.21041 0.93824 0.95949 1.11855 1.18232 0.86947 0.81458 0.78985 1.90798 1.72314 1.34387 1.47507 1.47819 1.06612 1.26269 1.51276 1.22754 0.98651 0.90637 0.91585 1.21825 0.95158 1.01924 0.96913 1.22523 0.95288 0.98325 0.94099 0.85436 1.23080 1.01281 0.94526 0.97727 1.21005 0.96736 0.91817 0.84809 1.44459 1.85346 1.00615 1.02460 1.19117 1.39862 0.82674 0.91325 0.91548 1.25249 1.04125 1.00154 0.95975 1.70143 1.58484 1.28791 1.02461 0.85477 0.77525 0.82073 0.77011 1.21691 1.21731 1.20991 1.21026 0.96731 0.87479 0.91453 0.95755 1.21294 0.79521 1.02218 0.97554 1.19393 0.86975 0.84937 0.92775 1.84693 1.77113 1.33587 1.34425 1.67124 1.08627 1.32890 1.17173 0.88485 0.86627 0.91291 0.78450 0.79216 0.86317 0.87379 0.87488 0.95391 0.89868 0.91394 0.99207 0.96968 0.94888 0.88164 0.93251 0.73381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.16 71.23 0.72 -0.48 16 2 C 0.16 3.19 6.78 42.58 0.29 3.48 16 3 C -0.17 -2.46 9.71 22.32 0.22 -2.24 16 4 C -0.03 -0.58 7.55 22.72 0.17 -0.40 16 5 C -0.22 -7.07 5.51 -19.91 -0.11 -7.18 16 6 C 0.56 21.88 7.36 86.69 0.64 22.52 16 7 O -0.57 -28.92 15.16 13.94 0.21 -28.70 16 8 N -0.59 -19.14 2.97 -826.85 -2.45 -21.60 16 9 C 0.08 1.74 4.88 86.20 0.42 2.16 16 10 C -0.12 -2.97 5.05 30.57 0.15 -2.81 16 11 C -0.08 -2.26 3.68 -9.21 -0.03 -2.29 16 12 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.13 -4.19 6.36 32.32 0.21 -3.98 16 14 C 0.18 8.79 4.65 86.71 0.40 9.20 16 15 N -0.60 -30.54 3.20 -674.11 -2.15 -32.69 16 16 C -0.20 -11.77 9.71 84.03 0.82 -10.95 16 17 H 0.07 4.12 6.36 -2.91 -0.02 4.10 16 18 C -0.06 -3.80 5.45 84.86 0.46 -3.34 16 19 N -0.95 -59.47 10.53 21.65 0.23 -59.25 16 20 Si 0.95 51.04 29.56 68.60 2.03 53.07 16 21 H -0.29 -15.34 7.11 99.48 0.71 -14.64 16 22 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 23 H -0.28 -15.67 7.11 99.48 0.71 -14.97 16 24 C 0.14 5.29 2.97 44.77 0.13 5.42 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 C 0.12 4.18 5.68 85.76 0.49 4.67 16 27 C 0.34 12.23 7.74 85.13 0.66 12.89 16 28 O -0.49 -20.53 12.10 -69.26 -0.84 -21.37 16 29 N -0.54 -16.61 10.28 -296.06 -3.04 -19.66 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.12 0.51 8.07 -2.39 -0.02 0.49 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.19 2.20 5.61 -2.91 -0.02 2.18 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.90 3.90 -2.39 -0.01 1.90 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.03 0.99 6.85 -2.39 -0.02 0.97 16 39 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H -0.01 -0.57 7.56 -2.39 -0.02 -0.59 16 42 H 0.01 0.69 7.07 -2.38 -0.02 0.67 16 43 H 0.24 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 45 H 0.05 2.24 5.51 -2.39 -0.01 2.23 16 46 H 0.41 15.27 9.06 -74.06 -0.67 14.60 16 Total: -1.00 -91.17 357.84 -0.03 -91.20 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.35 Total: 12.34 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 5.64 Total: 26.65 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -7.42 Total: -133.19 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.63 Total: -50.07 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.03 Total: 53.07 kcal Total: -91.17 -0.03 -91.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.217 kcal (2) G-P(sol) polarization free energy of solvation -91.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds