Wall clock time and date at job start Tue Mar 31 2020 16:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38359 * 119.41022 * 2 1 4 4 C 1.38333 * 119.46097 * 179.76539 * 3 2 1 5 5 C 1.39981 * 118.35013 * 0.49661 * 4 3 2 6 6 C 1.47521 * 120.60068 * 179.77622 * 5 4 3 7 7 O 1.21595 * 119.99962 * 126.26886 * 6 5 4 8 8 N 1.34781 * 120.00121 * 306.27670 * 6 5 4 9 9 C 1.46599 * 119.75472 * 174.16746 * 8 6 5 10 10 C 1.53885 * 110.70990 * 132.25061 * 9 8 6 11 11 C 1.51974 * 107.29233 * 51.81486 * 10 9 8 12 12 H 1.09000 * 111.57263 * 56.85696 * 11 10 9 13 13 C 1.53701 * 115.00184 * 184.56303 * 11 10 9 14 14 C 1.55304 * 101.81679 * 153.45399 * 13 11 10 15 15 N 1.48155 * 107.04113 * 337.56162 * 14 13 11 16 16 C 1.36939 * 126.40023 * 174.97954 * 15 14 13 17 17 H 1.07998 * 120.00451 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99464 * 0.02562 * 16 15 14 19 19 N 1.31621 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47132 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47161 * 120.00154 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00662 * 20 18 16 24 24 C 1.45510 * 107.20464 * 354.99119 * 15 14 13 25 25 H 1.09001 * 109.56916 * 273.38143 * 24 15 14 26 26 C 1.47798 * 119.75356 * 354.16828 * 8 6 5 27 27 C 1.40282 * 118.80340 * 359.50785 * 5 4 3 28 28 O 1.35433 * 119.79905 * 180.27447 * 27 5 4 29 29 N 1.31877 * 119.40913 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47426 * 269.98020 * 1 2 3 31 31 H 1.09001 * 109.47165 * 29.97376 * 1 2 3 32 32 H 1.09001 * 109.47216 * 149.97924 * 1 2 3 33 33 H 1.08010 * 120.26726 * 359.97438 * 3 2 1 34 34 H 1.08010 * 120.82460 * 180.25225 * 4 3 2 35 35 H 1.08999 * 109.22517 * 11.93562 * 9 8 6 36 36 H 1.08995 * 109.23098 * 252.57222 * 9 8 6 37 37 H 1.09002 * 109.89449 * 292.36350 * 10 9 8 38 38 H 1.09008 * 109.88859 * 171.26005 * 10 9 8 39 39 H 1.08999 * 110.95814 * 35.32526 * 13 11 10 40 40 H 1.08992 * 110.99468 * 271.60424 * 13 11 10 41 41 H 1.08999 * 109.91976 * 218.21328 * 14 13 11 42 42 H 1.08999 * 110.08256 * 96.99654 * 14 13 11 43 43 H 0.97000 * 119.99987 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.06473 * 112.04260 * 26 8 6 45 45 H 1.09000 * 110.06253 * 350.47362 * 26 8 6 46 46 H 0.96696 * 113.99878 * 89.99699 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2355 -0.0248 -0.0009 6 6 5.7096 -0.0814 -0.0010 7 8 6.2931 -0.7313 0.8450 8 7 6.4097 0.5874 -0.9387 9 6 7.8728 0.6334 -0.8593 10 6 8.5025 0.2996 -2.2232 11 6 7.8494 1.2035 -3.2556 12 1 7.9651 2.2561 -2.9972 13 6 8.2729 0.9409 -4.7096 14 6 7.0322 1.4423 -5.4978 15 7 5.8813 1.4048 -4.5655 16 6 4.6133 1.8541 -4.8213 17 1 3.8492 1.7760 -4.0621 18 6 4.3100 2.4098 -6.0567 19 7 5.2410 2.5045 -6.9822 20 14 2.5804 3.0233 -6.4056 21 1 1.7271 2.8047 -5.2100 22 1 2.6242 4.4732 -6.7235 23 1 2.0151 2.2801 -7.5603 24 6 6.3502 0.8018 -3.3270 25 1 6.2663 -0.2829 -3.3945 26 6 5.6965 1.2689 -2.0393 27 6 3.4757 -1.2040 -0.0009 28 8 4.0991 -2.4064 -0.0008 29 7 2.1545 -1.1488 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6410 2.1376 -0.0004 34 1 4.1223 2.1345 0.0091 35 1 8.2150 -0.0899 -0.1192 36 1 8.1845 1.6324 -0.5548 37 1 8.3148 -0.7447 -2.4728 38 1 9.5759 0.4872 -2.1919 39 1 8.4400 -0.1225 -4.8810 40 1 9.1594 1.5195 -4.9688 41 1 6.8427 0.7872 -6.3481 42 1 7.1962 2.4626 -5.8444 43 1 5.0289 2.8925 -7.8456 44 1 5.7987 2.3494 -1.9386 45 1 4.6430 0.9894 -2.0319 46 1 4.2802 -2.7555 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042246702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:26 Heat of formation + Delta-G solvation = -3.911694 kcal Electronic energy + Delta-G solvation = -29717.069019 eV Core-core repulsion = 25800.901713 eV Total energy + Delta-G solvation = -3916.167306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04945 -39.71738 -38.19142 -37.25762 -35.22960 -33.66903 -32.70050 -31.69856 -31.31247 -29.39226 -28.61780 -27.87126 -24.83707 -24.03428 -23.54073 -22.81810 -22.01229 -20.29450 -19.90354 -19.30770 -18.62756 -17.30631 -17.04073 -16.62648 -15.95986 -15.73693 -14.97867 -14.86232 -14.70150 -14.31805 -14.24455 -13.96004 -13.76260 -13.35932 -13.25516 -13.18933 -12.79943 -12.59585 -12.33790 -12.26547 -12.04694 -11.94664 -11.72011 -11.63180 -11.33123 -10.94959 -10.85596 -10.76069 -10.31647 -10.14961 -10.07120 -9.93266 -9.84602 -9.72065 -9.57697 -9.36056 -8.87332 -8.69048 -8.48577 -6.91468 -5.78149 -3.12249 0.62938 1.03362 2.64489 3.03825 3.34423 3.36989 3.39522 3.42492 3.62651 4.29603 4.43969 4.52251 4.60122 4.86542 4.94168 5.06210 5.15257 5.22916 5.26044 5.35218 5.39687 5.44346 5.55188 5.56859 5.68953 5.76181 5.78949 5.83178 5.84633 5.89579 5.95963 6.03914 6.08808 6.21890 6.23442 6.32707 6.44173 6.55836 6.60947 6.73564 7.00042 7.39443 7.42548 7.50932 7.56458 7.75497 7.77590 8.15264 8.19198 9.11919 9.75275 10.42908 11.34058 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005550 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.984722 B = 5043.854415 C = 7473.824773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.185 4.185 4 C -0.022 4.022 5 C -0.198 4.198 6 C 0.575 3.425 7 O -0.544 6.544 8 N -0.596 5.596 9 C 0.114 3.886 10 C -0.119 4.119 11 C -0.111 4.111 12 H 0.078 0.922 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.592 5.592 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.155 3.845 25 H 0.025 0.975 26 C 0.108 3.892 27 C 0.363 3.637 28 O -0.472 6.472 29 N -0.505 5.505 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.252 0.748 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.667 14.876 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.204 4.204 4 C -0.048 4.048 5 C -0.205 4.205 6 C 0.362 3.638 7 O -0.423 6.423 8 N -0.329 5.329 9 C -0.009 4.009 10 C -0.157 4.157 11 C -0.131 4.131 12 H 0.096 0.904 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.046 3.954 25 H 0.042 0.958 26 C -0.015 4.015 27 C 0.183 3.817 28 O -0.280 6.280 29 N -0.225 5.225 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.410 -2.658 14.508 14.817 hybrid contribution -0.393 1.034 -0.036 1.107 sum -1.803 -1.623 14.472 14.674 Atomic orbital electron populations 1.20813 0.88186 1.04191 1.03302 1.21217 0.97043 0.87174 0.91519 1.21905 0.94413 0.99678 1.04438 1.21686 0.94480 0.96977 0.91652 1.20941 0.94993 0.94653 1.09879 1.17863 0.86041 0.78565 0.81341 1.90729 1.70884 1.41794 1.38895 1.48188 1.07010 1.51848 1.25813 1.21600 0.78670 1.02005 0.98576 1.21798 0.99491 1.00422 0.94024 1.22262 0.97079 0.99061 0.94718 0.90402 1.22726 0.99530 1.00254 0.95136 1.21551 0.82434 1.00132 0.90595 1.44173 1.07559 1.71293 1.08675 1.19002 0.85277 1.33163 0.98295 0.90513 1.24784 0.97816 1.01227 0.96302 1.69951 1.31411 1.49898 1.05293 0.86105 0.83800 0.78254 0.77986 1.20454 1.21693 1.21691 1.20978 0.91727 0.95857 0.86841 0.95766 1.22001 0.96671 0.96772 0.86050 1.18956 0.86210 0.84621 0.91879 1.84686 1.76626 1.32528 1.34127 1.67057 1.09147 1.30490 1.15813 0.89993 0.90012 0.90059 0.83637 0.83697 0.89262 0.91769 0.91365 0.90773 0.92516 0.92150 0.94438 0.92520 0.93717 0.90705 0.89894 0.73502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.16 36.00 0.37 -0.59 16 2 C 0.17 2.10 6.78 -82.53 -0.56 1.54 16 3 C -0.18 -2.11 9.71 -39.50 -0.38 -2.50 16 4 C -0.02 -0.28 7.93 -38.89 -0.31 -0.59 16 5 C -0.20 -3.02 4.57 -104.69 -0.48 -3.50 16 6 C 0.57 9.46 6.83 -12.47 -0.09 9.38 16 7 O -0.54 -9.81 16.08 1.77 0.03 -9.78 16 8 N -0.60 -9.42 3.01 -173.97 -0.52 -9.95 16 9 C 0.11 1.58 6.36 -3.53 -0.02 1.56 16 10 C -0.12 -1.66 5.72 -26.79 -0.15 -1.81 16 11 C -0.11 -1.89 2.61 -89.52 -0.23 -2.12 16 12 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 13 C -0.14 -2.51 6.54 -25.15 -0.16 -2.67 16 14 C 0.18 4.17 5.46 -1.91 -0.01 4.16 16 15 N -0.59 -14.45 3.35 -162.90 -0.55 -15.00 16 16 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 17 H 0.08 1.96 7.41 -52.49 -0.39 1.57 16 18 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 19 N -0.92 -26.28 10.43 55.49 0.58 -25.70 16 20 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.16 3.11 2.76 -67.82 -0.19 2.93 16 25 H 0.03 0.55 7.93 -51.93 -0.41 0.14 16 26 C 0.11 1.87 4.75 -3.95 -0.02 1.85 16 27 C 0.36 5.71 7.76 -16.61 -0.13 5.58 16 28 O -0.47 -7.16 12.75 -21.50 -0.27 -7.43 16 29 N -0.51 -7.60 10.28 -9.21 -0.09 -7.69 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.15 1.60 7.78 -52.48 -0.41 1.19 16 35 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 39 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 42 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.51 5.24 -51.93 -0.27 1.24 16 46 H 0.41 4.33 9.06 45.56 0.41 4.75 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -33.01 366.91 -8.91 -41.93 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.98 Total: 4.90 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -2.61 Total: 6.76 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.58 Total: -58.34 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.25 Total: -17.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.01 -8.91 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.017 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds