Wall clock time and date at job start Tue Mar 31 2020 16:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38359 * 119.41022 * 2 1 4 4 C 1.38333 * 119.46097 * 179.76539 * 3 2 1 5 5 C 1.39981 * 118.35013 * 0.49661 * 4 3 2 6 6 C 1.47521 * 120.60068 * 179.77622 * 5 4 3 7 7 O 1.21595 * 119.99962 * 126.26886 * 6 5 4 8 8 N 1.34781 * 120.00121 * 306.27670 * 6 5 4 9 9 C 1.46599 * 119.75472 * 174.16746 * 8 6 5 10 10 C 1.53885 * 110.70990 * 132.25061 * 9 8 6 11 11 C 1.51974 * 107.29233 * 51.81486 * 10 9 8 12 12 H 1.09000 * 111.57263 * 56.85696 * 11 10 9 13 13 C 1.53701 * 115.00184 * 184.56303 * 11 10 9 14 14 C 1.55304 * 101.81679 * 153.45399 * 13 11 10 15 15 N 1.48155 * 107.04113 * 337.56162 * 14 13 11 16 16 C 1.36939 * 126.40023 * 174.97954 * 15 14 13 17 17 H 1.07998 * 120.00451 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99464 * 0.02562 * 16 15 14 19 19 N 1.31621 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47132 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47161 * 120.00154 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00662 * 20 18 16 24 24 C 1.45510 * 107.20464 * 354.99119 * 15 14 13 25 25 H 1.09001 * 109.56916 * 273.38143 * 24 15 14 26 26 C 1.47798 * 119.75356 * 354.16828 * 8 6 5 27 27 C 1.40282 * 118.80340 * 359.50785 * 5 4 3 28 28 O 1.35433 * 119.79905 * 180.27447 * 27 5 4 29 29 N 1.31877 * 119.40913 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47426 * 269.98020 * 1 2 3 31 31 H 1.09001 * 109.47165 * 29.97376 * 1 2 3 32 32 H 1.09001 * 109.47216 * 149.97924 * 1 2 3 33 33 H 1.08010 * 120.26726 * 359.97438 * 3 2 1 34 34 H 1.08010 * 120.82460 * 180.25225 * 4 3 2 35 35 H 1.08999 * 109.22517 * 11.93562 * 9 8 6 36 36 H 1.08995 * 109.23098 * 252.57222 * 9 8 6 37 37 H 1.09002 * 109.89449 * 292.36350 * 10 9 8 38 38 H 1.09008 * 109.88859 * 171.26005 * 10 9 8 39 39 H 1.08999 * 110.95814 * 35.32526 * 13 11 10 40 40 H 1.08992 * 110.99468 * 271.60424 * 13 11 10 41 41 H 1.08999 * 109.91976 * 218.21328 * 14 13 11 42 42 H 1.08999 * 110.08256 * 96.99654 * 14 13 11 43 43 H 0.97000 * 119.99987 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.06473 * 112.04260 * 26 8 6 45 45 H 1.09000 * 110.06253 * 350.47362 * 26 8 6 46 46 H 0.96696 * 113.99878 * 89.99699 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.2355 -0.0248 -0.0009 6 6 5.7096 -0.0814 -0.0010 7 8 6.2931 -0.7313 0.8450 8 7 6.4097 0.5874 -0.9387 9 6 7.8728 0.6334 -0.8593 10 6 8.5025 0.2996 -2.2232 11 6 7.8494 1.2035 -3.2556 12 1 7.9651 2.2561 -2.9972 13 6 8.2729 0.9409 -4.7096 14 6 7.0322 1.4423 -5.4978 15 7 5.8813 1.4048 -4.5655 16 6 4.6133 1.8541 -4.8213 17 1 3.8492 1.7760 -4.0621 18 6 4.3100 2.4098 -6.0567 19 7 5.2410 2.5045 -6.9822 20 14 2.5804 3.0233 -6.4056 21 1 1.7271 2.8047 -5.2100 22 1 2.6242 4.4732 -6.7235 23 1 2.0151 2.2801 -7.5603 24 6 6.3502 0.8018 -3.3270 25 1 6.2663 -0.2829 -3.3945 26 6 5.6965 1.2689 -2.0393 27 6 3.4757 -1.2040 -0.0009 28 8 4.0991 -2.4064 -0.0008 29 7 2.1545 -1.1488 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6410 2.1376 -0.0004 34 1 4.1223 2.1345 0.0091 35 1 8.2150 -0.0899 -0.1192 36 1 8.1845 1.6324 -0.5548 37 1 8.3148 -0.7447 -2.4728 38 1 9.5759 0.4872 -2.1919 39 1 8.4400 -0.1225 -4.8810 40 1 9.1594 1.5195 -4.9688 41 1 6.8427 0.7872 -6.3481 42 1 7.1962 2.4626 -5.8444 43 1 5.0289 2.8925 -7.8456 44 1 5.7987 2.3494 -1.9386 45 1 4.6430 0.9894 -2.0319 46 1 4.2802 -2.7555 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042246702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:25 Heat of formation + Delta-G solvation = -28.143793 kcal Electronic energy + Delta-G solvation = -29718.119802 eV Core-core repulsion = 25800.901713 eV Total energy + Delta-G solvation = -3917.218089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17983 -40.97802 -39.60593 -38.35163 -36.72456 -35.00265 -34.13416 -32.87011 -32.64591 -30.90352 -30.20617 -28.90086 -26.55454 -25.51148 -24.66012 -23.93430 -23.23130 -21.83391 -21.51488 -20.59001 -19.71081 -18.69642 -18.48138 -17.97051 -17.18737 -16.93531 -16.72823 -16.13504 -15.94138 -15.75485 -15.60644 -15.24661 -14.86401 -14.73494 -14.63594 -14.36463 -13.90633 -13.81319 -13.64658 -13.55115 -13.16014 -13.13180 -13.09167 -12.98297 -12.77029 -12.74181 -12.50614 -12.12476 -11.97620 -11.82258 -11.57207 -11.41563 -11.33399 -11.17484 -10.83429 -10.72542 -10.51537 -9.91148 -9.73805 -8.91455 -7.84364 -5.20173 -0.39918 0.04095 1.40822 1.46133 1.47933 1.57061 1.84883 2.37854 2.49790 2.59857 3.15598 3.34740 3.46008 3.56578 3.67303 3.82033 3.90485 3.95010 3.98303 4.19101 4.22530 4.26280 4.35206 4.38679 4.46714 4.58075 4.65306 4.65774 4.78833 4.81720 4.85245 4.89724 4.91653 4.99979 5.07790 5.10898 5.12119 5.14692 5.39336 5.47348 5.49115 5.55899 5.65438 5.78117 6.13890 6.19650 6.42622 6.77387 6.92417 7.07512 7.76361 8.44765 9.27173 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005550 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.984722 B = 5043.854415 C = 7473.824773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.178 4.178 4 C -0.024 4.024 5 C -0.221 4.221 6 C 0.575 3.425 7 O -0.565 6.565 8 N -0.595 5.595 9 C 0.110 3.890 10 C -0.108 4.108 11 C -0.096 4.096 12 H 0.085 0.915 13 C -0.124 4.124 14 C 0.181 3.819 15 N -0.610 5.610 16 C -0.232 4.232 17 H 0.084 0.916 18 C -0.064 4.064 19 N -0.951 5.951 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.290 1.290 23 H -0.300 1.300 24 C 0.146 3.854 25 H -0.002 1.002 26 C 0.124 3.876 27 C 0.343 3.657 28 O -0.490 6.490 29 N -0.529 5.529 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.086 0.914 41 H -0.004 1.004 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -0.306 16.762 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.197 4.197 4 C -0.050 4.050 5 C -0.227 4.227 6 C 0.363 3.637 7 O -0.445 6.445 8 N -0.327 5.327 9 C -0.011 4.011 10 C -0.147 4.147 11 C -0.115 4.115 12 H 0.104 0.896 13 C -0.163 4.163 14 C 0.057 3.943 15 N -0.335 5.335 16 C -0.361 4.361 17 H 0.102 0.898 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.799 3.201 21 H -0.183 1.183 22 H -0.217 1.217 23 H -0.227 1.227 24 C 0.038 3.962 25 H 0.016 0.984 26 C 0.001 3.999 27 C 0.164 3.836 28 O -0.300 6.300 29 N -0.250 5.250 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.015 0.985 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.786 -1.312 16.445 16.594 hybrid contribution -0.318 0.550 -0.614 0.884 sum -2.104 -0.762 15.831 15.988 Atomic orbital electron populations 1.20945 0.85598 1.04859 1.04865 1.21947 0.98800 0.86928 0.90164 1.22330 0.93974 1.00801 1.02596 1.21983 0.95367 0.96686 0.90970 1.20956 0.94382 0.95585 1.11785 1.18066 0.86640 0.78008 0.81029 1.90706 1.71505 1.42577 1.39718 1.48201 1.07839 1.51566 1.25069 1.21794 0.77389 1.03526 0.98432 1.21754 1.01339 0.98810 0.92756 1.22194 0.94539 1.00105 0.94679 0.89649 1.22609 0.97743 1.00818 0.95085 1.21345 0.84822 0.97695 0.90463 1.44421 1.07328 1.71096 1.10613 1.19380 0.86518 1.31900 0.98312 0.89775 1.25596 1.01409 1.02296 0.96404 1.70167 1.33195 1.51232 1.05393 0.85128 0.79874 0.77230 0.77917 1.18295 1.21672 1.22734 1.21089 0.94514 0.94031 0.86561 0.98417 1.21702 0.96008 0.97214 0.84972 1.19157 0.86775 0.84786 0.92899 1.84631 1.76837 1.32901 1.35603 1.67107 1.08914 1.32066 1.16886 0.87843 0.87789 0.90890 0.79971 0.81928 0.89166 0.89270 0.92605 0.87197 0.91897 0.89514 0.98542 0.95422 0.94494 0.89593 0.90929 0.72001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.16 71.23 0.72 -0.86 16 2 C 0.16 3.68 6.78 42.58 0.29 3.97 16 3 C -0.18 -3.58 9.71 22.32 0.22 -3.36 16 4 C -0.02 -0.58 7.93 22.71 0.18 -0.40 16 5 C -0.22 -6.60 4.57 -19.91 -0.09 -6.69 16 6 C 0.57 18.49 6.83 86.69 0.59 19.08 16 7 O -0.56 -20.08 16.08 -0.66 -0.01 -20.09 16 8 N -0.60 -17.89 3.01 -822.58 -2.48 -20.36 16 9 C 0.11 2.75 6.36 86.66 0.55 3.30 16 10 C -0.11 -2.72 5.72 30.55 0.17 -2.54 16 11 C -0.10 -3.05 2.61 -10.08 -0.03 -3.07 16 12 H 0.09 2.66 8.13 -2.39 -0.02 2.64 16 13 C -0.12 -4.38 6.54 31.62 0.21 -4.18 16 14 C 0.18 8.79 5.46 86.85 0.47 9.26 16 15 N -0.61 -30.16 3.35 -669.29 -2.24 -32.40 16 16 C -0.23 -12.41 9.88 84.03 0.83 -11.58 16 17 H 0.08 4.26 7.41 -2.91 -0.02 4.23 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 19 N -0.95 -56.20 10.43 21.65 0.23 -55.98 16 20 Si 0.97 44.24 29.55 68.60 2.03 46.27 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 C 0.15 5.81 2.76 45.59 0.13 5.94 16 25 H 0.00 -0.07 7.93 -2.39 -0.02 -0.09 16 26 C 0.12 4.15 4.75 85.73 0.41 4.56 16 27 C 0.34 10.86 7.76 85.13 0.66 11.52 16 28 O -0.49 -15.31 12.75 -83.93 -1.07 -16.38 16 29 N -0.53 -15.71 10.28 -296.06 -3.04 -18.75 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.16 3.16 7.78 -2.91 -0.02 3.13 16 35 H 0.09 2.32 6.92 -2.39 -0.02 2.30 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 38 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.00 -0.21 7.77 -2.39 -0.02 -0.22 16 42 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.07 2.59 5.24 -2.39 -0.01 2.57 16 46 H 0.42 9.40 9.06 -74.06 -0.67 8.73 16 Total: -1.00 -74.61 366.91 -0.47 -75.08 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.33 Total: 20.73 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 5.78 Total: 21.88 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -7.53 Total: -127.49 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.08 Total: -36.46 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -74.61 -0.47 -75.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042246702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds