Wall clock time and date at job start Tue Mar 31 2020 17:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.45863 * 2 1 4 4 C 1.34776 * 120.00422 * 59.99666 * 3 2 1 5 5 O 1.21553 * 119.99534 * 359.97438 * 4 3 2 6 6 C 1.47853 * 120.00546 * 180.02562 * 4 3 2 7 7 C 1.39708 * 120.06836 * 359.97438 * 6 4 3 8 8 C 1.38061 * 120.14332 * 179.72802 * 7 6 4 9 9 C 1.38098 * 120.29542 * 0.02562 * 8 7 6 10 10 C 1.39666 * 120.14740 * 0.02562 * 9 8 7 11 11 C 1.47855 * 120.07472 * 179.97438 * 10 9 8 12 12 N 1.34781 * 120.00358 * 359.97438 * 11 10 9 13 13 O 1.21558 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.39295 * 120.07993 * 179.72401 * 6 4 3 15 15 C 1.53045 * 109.45719 * 119.96895 * 2 1 3 16 16 C 1.53162 * 109.32650 * 181.39266 * 15 2 1 17 17 N 1.46932 * 108.76508 * 305.35199 * 16 15 2 18 18 C 1.36937 * 120.63091 * 233.63549 * 17 16 15 19 19 H 1.07997 * 119.99873 * 151.81548 * 18 17 16 20 20 C 1.38811 * 119.99807 * 331.80856 * 18 17 16 21 21 N 1.31617 * 120.00174 * 343.08196 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 163.08605 * 20 18 17 23 23 H 1.48505 * 109.46772 * 89.99810 * 22 20 18 24 24 H 1.48497 * 109.47144 * 209.99672 * 22 20 18 25 25 H 1.48494 * 109.46924 * 329.99944 * 22 20 18 26 26 C 1.46922 * 118.73613 * 53.61401 * 17 16 15 27 27 C 1.53033 * 109.46453 * 240.02515 * 2 1 3 28 28 H 1.09005 * 109.46717 * 60.00440 * 1 2 3 29 29 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47420 * 300.00466 * 1 2 3 31 31 H 0.96997 * 119.99644 * 239.99603 * 3 2 1 32 32 H 1.07997 * 119.92929 * 359.75442 * 7 6 4 33 33 H 1.07995 * 119.85087 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.92545 * 179.97438 * 9 8 7 35 35 H 0.96998 * 119.99636 * 0.02562 * 12 11 10 36 36 H 0.96997 * 119.99898 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.14003 * 0.29240 * 14 6 4 38 38 H 1.09007 * 109.49624 * 301.32529 * 15 2 1 39 39 H 1.09000 * 109.49507 * 61.42057 * 15 2 1 40 40 H 1.08994 * 109.59148 * 185.57490 * 16 15 2 41 41 H 1.08994 * 109.71099 * 65.20603 * 16 15 2 42 42 H 0.96998 * 119.99963 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.58710 * 186.60705 * 26 17 16 44 44 H 1.08994 * 109.70752 * 66.24839 * 26 17 16 45 45 H 1.09006 * 109.49517 * 298.57782 * 27 2 1 46 46 H 1.08998 * 109.50124 * 58.64214 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2112 1.0107 5 8 0.9931 1.8137 1.9221 6 6 2.1843 3.6055 1.0105 7 6 2.9876 4.0641 -0.0366 8 6 3.4433 5.3673 -0.0412 9 6 3.1094 6.2257 0.9878 10 6 2.3080 5.7798 2.0411 11 6 1.9520 6.7001 3.1423 12 7 2.4014 7.9708 3.1306 13 8 1.2541 6.3108 4.0582 14 6 1.8438 4.4662 2.0514 15 6 2.0398 -0.7208 1.2501 16 6 3.5710 -0.6887 1.2648 17 7 4.0677 -1.2492 0.0006 18 6 4.9753 -2.2746 0.0009 19 1 5.0027 -2.9717 -0.8236 20 6 5.8602 -2.4178 1.0607 21 7 6.0654 -1.4141 1.8870 22 14 6.7600 -4.0352 1.3142 23 1 8.0445 -4.0090 0.5693 24 1 7.0308 -4.2295 2.7612 25 1 5.9200 -5.1526 0.8133 26 6 3.5715 -0.6890 -1.2637 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5757 1.6986 -0.7275 32 1 3.2523 3.3979 -0.8443 33 1 4.0636 5.7170 -0.8531 34 1 3.4695 7.2439 0.9783 35 1 2.9580 8.2816 2.3995 36 1 2.1681 8.5743 3.8532 37 1 1.2237 4.1164 2.8636 38 1 1.6573 -0.2207 2.1399 39 1 1.6975 -1.7556 1.2383 40 1 3.9411 -1.2847 2.0989 41 1 3.9162 0.3398 1.3690 42 1 6.6841 -1.5141 2.6273 43 1 3.9418 -1.2851 -2.0979 44 1 3.9146 0.3401 -1.3694 45 1 1.6977 -1.7558 -1.2380 46 1 1.6571 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045480807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:46 Heat of formation + Delta-G solvation = -23.751644 kcal Electronic energy + Delta-G solvation = -28926.092761 eV Core-core repulsion = 25009.065130 eV Total energy + Delta-G solvation = -3917.027631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64185 -39.84216 -38.30004 -37.08758 -34.43071 -34.14390 -32.44333 -31.34388 -31.22774 -30.20438 -29.87924 -27.42221 -24.52263 -24.24184 -23.78075 -22.27297 -21.47456 -21.01040 -20.11808 -18.70984 -18.65518 -17.34911 -16.77635 -16.61222 -16.22326 -15.16146 -15.05015 -14.87774 -14.70554 -14.63921 -14.30589 -13.95470 -13.90162 -13.60527 -13.40475 -13.24572 -13.12202 -12.67563 -12.31926 -12.17455 -11.81474 -11.63187 -11.50816 -11.38627 -11.12468 -10.93381 -10.70297 -10.40264 -10.33595 -10.23940 -10.01600 -9.97588 -9.77216 -9.56059 -9.25953 -9.21375 -9.13782 -8.58799 -8.44545 -6.65257 -5.77250 -3.20565 0.46117 0.92526 2.46044 3.13012 3.16301 3.37664 3.45099 3.45711 3.47444 3.84594 4.43413 4.48930 4.50523 4.60683 4.87620 4.95530 5.17734 5.23958 5.35010 5.39605 5.44965 5.53638 5.60884 5.68053 5.94464 5.97712 5.99777 6.06188 6.10460 6.13155 6.19356 6.37299 6.43605 6.46240 6.54292 6.55575 6.65406 6.73654 6.82874 6.92570 7.00516 7.09091 7.43356 7.72552 7.80675 7.86629 7.96907 8.46350 8.52049 9.22454 9.85965 10.42521 11.30582 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.003224 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.870686 B = 8683.966827 C = 9418.028623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.703 5.703 4 C 0.559 3.441 5 O -0.530 6.530 6 C -0.131 4.131 7 C -0.057 4.057 8 C -0.133 4.133 9 C -0.068 4.068 10 C -0.151 4.151 11 C 0.565 3.435 12 N -0.853 5.853 13 O -0.534 6.534 14 C -0.001 4.001 15 C -0.152 4.152 16 C 0.178 3.822 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.146 3.854 27 C -0.138 4.138 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.395 0.605 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.400 0.600 36 H 0.405 0.595 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 17.725 -6.498 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.355 5.355 4 C 0.345 3.655 5 O -0.408 6.408 6 C -0.134 4.134 7 C -0.076 4.076 8 C -0.151 4.151 9 C -0.087 4.087 10 C -0.155 4.155 11 C 0.351 3.649 12 N -0.417 5.417 13 O -0.411 6.411 14 C -0.021 4.021 15 C -0.192 4.192 16 C 0.052 3.948 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.231 0.769 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.230 0.770 36 H 0.236 0.764 37 H 0.168 0.832 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.094 0.906 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.738 16.974 -5.199 19.365 hybrid contribution 1.191 -0.167 -0.328 1.247 sum -6.546 16.807 -5.528 18.865 Atomic orbital electron populations 1.22234 0.95304 1.01971 1.02391 1.20305 0.92656 0.79774 0.97328 1.46008 1.52726 1.12216 1.24511 1.18019 0.80447 0.84634 0.82361 1.90721 1.38003 1.76585 1.35470 1.20107 1.01591 0.94969 0.96743 1.21613 0.93284 0.95898 0.96759 1.21040 1.01202 0.93519 0.99303 1.21410 0.94942 0.99556 0.92760 1.19788 1.03686 0.95165 0.96826 1.18234 0.79094 0.82042 0.85488 1.43728 1.55960 1.12865 1.29151 1.90855 1.37504 1.76267 1.36430 1.21396 0.93756 0.90507 0.96414 1.22587 1.00797 0.99158 0.96626 1.20680 0.87236 0.96957 0.89930 1.44061 1.48330 1.39563 0.99370 1.19142 1.09742 1.02881 1.06694 0.91809 1.25044 0.97224 0.97346 0.99897 1.70034 1.37254 1.29016 1.18076 0.86335 0.79611 0.83876 0.77152 1.21460 1.21566 1.20503 1.20849 0.90445 0.96077 0.90700 1.22347 0.99682 1.00621 0.95089 0.93469 0.92148 0.90707 0.76878 0.84919 0.84615 0.85358 0.77039 0.76396 0.83217 0.90953 0.92109 0.89802 0.96560 0.93656 0.92616 0.97077 0.90576 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.10 0.66 -131.78 -0.09 3.01 16 3 N -0.70 -10.96 4.05 -48.50 -0.20 -11.15 16 4 C 0.56 9.35 7.19 -12.33 -0.09 9.27 16 5 O -0.53 -10.46 12.55 5.32 0.07 -10.39 16 6 C -0.13 -1.84 5.87 -105.02 -0.62 -2.45 16 7 C -0.06 -0.61 9.54 -39.10 -0.37 -0.99 16 8 C -0.13 -1.12 10.02 -39.70 -0.40 -1.52 16 9 C -0.07 -0.55 9.54 -39.10 -0.37 -0.93 16 10 C -0.15 -1.74 5.87 -105.02 -0.62 -2.35 16 11 C 0.57 6.60 8.05 -12.32 -0.10 6.50 16 12 N -0.85 -5.61 8.82 30.53 0.27 -5.34 16 13 O -0.53 -8.62 17.18 5.32 0.09 -8.53 16 14 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 15 C -0.15 -3.11 4.66 -26.62 -0.12 -3.24 16 16 C 0.18 4.32 5.04 -3.72 -0.02 4.30 16 17 N -0.59 -14.39 2.99 -172.34 -0.52 -14.91 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 19 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -26.26 11.20 55.49 0.62 -25.64 16 22 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 2.83 6.24 -3.71 -0.02 2.81 16 27 C -0.14 -2.21 4.96 -26.61 -0.13 -2.34 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.27 6.16 -51.93 -0.32 0.95 16 31 H 0.40 5.33 5.29 -40.82 -0.22 5.12 16 32 H 0.13 1.22 6.39 -52.49 -0.34 0.89 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.54 6.39 -52.49 -0.34 0.20 16 35 H 0.40 1.35 6.85 -40.82 -0.28 1.07 16 36 H 0.40 2.15 8.93 -40.82 -0.36 1.78 16 37 H 0.15 2.42 7.23 -52.48 -0.38 2.04 16 38 H 0.07 1.56 6.20 -51.93 -0.32 1.24 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 2.34 6.06 -51.93 -0.31 2.03 16 41 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -35.14 364.46 -8.55 -43.69 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.13 Total: 7.56 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.22 Total: 2.53 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.18 Total: -57.04 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.14 -8.55 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045480807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.936 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds