Wall clock time and date at job start Tue Mar 31 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.45863 * 2 1 4 4 C 1.34776 * 120.00422 * 59.99666 * 3 2 1 5 5 O 1.21553 * 119.99534 * 359.97438 * 4 3 2 6 6 C 1.47853 * 120.00546 * 180.02562 * 4 3 2 7 7 C 1.39708 * 120.06836 * 359.97438 * 6 4 3 8 8 C 1.38061 * 120.14332 * 179.72802 * 7 6 4 9 9 C 1.38098 * 120.29542 * 0.02562 * 8 7 6 10 10 C 1.39666 * 120.14740 * 0.02562 * 9 8 7 11 11 C 1.47855 * 120.07472 * 179.97438 * 10 9 8 12 12 N 1.34781 * 120.00358 * 359.97438 * 11 10 9 13 13 O 1.21558 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.39295 * 120.07993 * 179.72401 * 6 4 3 15 15 C 1.53045 * 109.45719 * 119.96895 * 2 1 3 16 16 C 1.53162 * 109.32650 * 181.39266 * 15 2 1 17 17 N 1.46932 * 108.76508 * 305.35199 * 16 15 2 18 18 C 1.36937 * 120.63091 * 233.63549 * 17 16 15 19 19 H 1.07997 * 119.99873 * 151.81548 * 18 17 16 20 20 C 1.38811 * 119.99807 * 331.80856 * 18 17 16 21 21 N 1.31617 * 120.00174 * 343.08196 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 163.08605 * 20 18 17 23 23 H 1.48505 * 109.46772 * 89.99810 * 22 20 18 24 24 H 1.48497 * 109.47144 * 209.99672 * 22 20 18 25 25 H 1.48494 * 109.46924 * 329.99944 * 22 20 18 26 26 C 1.46922 * 118.73613 * 53.61401 * 17 16 15 27 27 C 1.53033 * 109.46453 * 240.02515 * 2 1 3 28 28 H 1.09005 * 109.46717 * 60.00440 * 1 2 3 29 29 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47420 * 300.00466 * 1 2 3 31 31 H 0.96997 * 119.99644 * 239.99603 * 3 2 1 32 32 H 1.07997 * 119.92929 * 359.75442 * 7 6 4 33 33 H 1.07995 * 119.85087 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.92545 * 179.97438 * 9 8 7 35 35 H 0.96998 * 119.99636 * 0.02562 * 12 11 10 36 36 H 0.96997 * 119.99898 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.14003 * 0.29240 * 14 6 4 38 38 H 1.09007 * 109.49624 * 301.32529 * 15 2 1 39 39 H 1.09000 * 109.49507 * 61.42057 * 15 2 1 40 40 H 1.08994 * 109.59148 * 185.57490 * 16 15 2 41 41 H 1.08994 * 109.71099 * 65.20603 * 16 15 2 42 42 H 0.96998 * 119.99963 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.58710 * 186.60705 * 26 17 16 44 44 H 1.08994 * 109.70752 * 66.24839 * 26 17 16 45 45 H 1.09006 * 109.49517 * 298.57782 * 27 2 1 46 46 H 1.08998 * 109.50124 * 58.64214 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2112 1.0107 5 8 0.9931 1.8137 1.9221 6 6 2.1843 3.6055 1.0105 7 6 2.9876 4.0641 -0.0366 8 6 3.4433 5.3673 -0.0412 9 6 3.1094 6.2257 0.9878 10 6 2.3080 5.7798 2.0411 11 6 1.9520 6.7001 3.1423 12 7 2.4014 7.9708 3.1306 13 8 1.2541 6.3108 4.0582 14 6 1.8438 4.4662 2.0514 15 6 2.0398 -0.7208 1.2501 16 6 3.5710 -0.6887 1.2648 17 7 4.0677 -1.2492 0.0006 18 6 4.9753 -2.2746 0.0009 19 1 5.0027 -2.9717 -0.8236 20 6 5.8602 -2.4178 1.0607 21 7 6.0654 -1.4141 1.8870 22 14 6.7600 -4.0352 1.3142 23 1 8.0445 -4.0090 0.5693 24 1 7.0308 -4.2295 2.7612 25 1 5.9200 -5.1526 0.8133 26 6 3.5715 -0.6890 -1.2637 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5757 1.6986 -0.7275 32 1 3.2523 3.3979 -0.8443 33 1 4.0636 5.7170 -0.8531 34 1 3.4695 7.2439 0.9783 35 1 2.9580 8.2816 2.3995 36 1 2.1681 8.5743 3.8532 37 1 1.2237 4.1164 2.8636 38 1 1.6573 -0.2207 2.1399 39 1 1.6975 -1.7556 1.2383 40 1 3.9411 -1.2847 2.0989 41 1 3.9162 0.3398 1.3690 42 1 6.6841 -1.5141 2.6273 43 1 3.9418 -1.2851 -2.0979 44 1 3.9146 0.3401 -1.3694 45 1 1.6977 -1.7558 -1.2380 46 1 1.6571 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045480807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:45 Heat of formation + Delta-G solvation = -50.091495 kcal Electronic energy + Delta-G solvation = -28927.234943 eV Core-core repulsion = 25009.065130 eV Total energy + Delta-G solvation = -3918.169813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78379 -40.93384 -39.41330 -38.44294 -36.14469 -34.99551 -33.85624 -32.91463 -32.10151 -31.63033 -31.31507 -29.08127 -25.97081 -25.38397 -24.96917 -23.92898 -22.69058 -22.28701 -21.29280 -20.16185 -19.63772 -18.76558 -18.06912 -17.63084 -17.05367 -16.84625 -16.44405 -16.15298 -15.87181 -15.76233 -15.57396 -15.37127 -15.19471 -14.87868 -14.77757 -14.71211 -14.60348 -14.04402 -13.54335 -13.28772 -13.19980 -13.03072 -12.89036 -12.81252 -12.56797 -12.54855 -12.43651 -12.25378 -11.97396 -11.75527 -11.39225 -11.31358 -11.28340 -10.79535 -10.58308 -10.52437 -10.18981 -10.08724 -9.90630 -8.65278 -7.85997 -5.31320 -0.39022 -0.00881 1.44793 1.47990 1.55330 1.56526 2.05621 2.15944 2.48982 2.51673 2.86893 3.29357 3.56199 3.72481 3.73691 3.82301 3.87813 4.04587 4.08467 4.10705 4.13886 4.36262 4.49191 4.57699 4.67670 4.71695 4.79491 4.87698 4.88225 4.95052 5.04804 5.12874 5.15337 5.18363 5.24743 5.25702 5.35648 5.38078 5.50318 5.62389 5.66625 5.71196 5.77212 5.83939 6.37474 6.39471 6.62601 7.15337 7.24334 7.27444 7.88226 8.39802 9.19670 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.003224 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.870686 B = 8683.966827 C = 9418.028623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.186 3.814 3 N -0.696 5.696 4 C 0.552 3.448 5 O -0.573 6.573 6 C -0.156 4.156 7 C -0.056 4.056 8 C -0.121 4.121 9 C -0.045 4.045 10 C -0.162 4.162 11 C 0.561 3.439 12 N -0.822 5.822 13 O -0.593 6.593 14 C -0.029 4.029 15 C -0.141 4.141 16 C 0.194 3.806 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.140 3.860 27 C -0.124 4.124 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.407 0.593 32 H 0.151 0.849 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.420 0.580 36 H 0.414 0.586 37 H 0.110 0.890 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.038 0.962 41 H -0.008 1.008 42 H 0.246 0.754 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 19.734 -10.241 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.101 3.899 3 N -0.348 5.348 4 C 0.340 3.660 5 O -0.454 6.454 6 C -0.159 4.159 7 C -0.075 4.075 8 C -0.138 4.138 9 C -0.063 4.063 10 C -0.165 4.165 11 C 0.347 3.653 12 N -0.387 5.387 13 O -0.474 6.474 14 C -0.049 4.049 15 C -0.181 4.181 16 C 0.068 3.932 17 N -0.330 5.330 18 C -0.389 4.389 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.195 1.195 26 C 0.015 3.985 27 C -0.163 4.163 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.168 0.832 33 H 0.198 0.802 34 H 0.197 0.803 35 H 0.253 0.747 36 H 0.247 0.753 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.010 0.990 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.931 19.036 -9.029 22.180 hybrid contribution 0.982 -0.676 0.794 1.433 sum -5.949 18.360 -8.235 20.983 Atomic orbital electron populations 1.22122 0.93635 1.02671 1.02530 1.20230 0.93864 0.80138 0.95685 1.45890 1.52682 1.11507 1.24673 1.18557 0.79724 0.85920 0.81761 1.90694 1.39994 1.77665 1.37027 1.19928 1.04015 0.93427 0.98536 1.21893 0.92159 0.97589 0.95856 1.21573 1.00120 0.92056 1.00058 1.21949 0.92094 1.01728 0.90534 1.19863 1.04586 0.93937 0.98122 1.18404 0.78657 0.83361 0.84860 1.43473 1.54506 1.10992 1.29767 1.90830 1.40406 1.77598 1.38594 1.21215 0.95055 0.92499 0.96134 1.22388 0.97930 0.99340 0.98421 1.20278 0.89379 0.94455 0.89047 1.44264 1.48193 1.39628 1.00929 1.19522 1.09258 1.03618 1.06508 0.91121 1.25795 0.98720 1.00172 1.00132 1.70200 1.38344 1.30911 1.18662 0.85343 0.78687 0.80509 0.76319 1.20790 1.22579 1.19498 1.21096 0.92558 0.96543 0.88341 1.22226 0.96928 1.01008 0.96109 0.90831 0.91155 0.93043 0.75454 0.83168 0.80167 0.80291 0.74687 0.75306 0.87158 0.92903 0.92559 0.94322 0.98952 0.94469 0.91905 0.95660 0.90735 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.40 71.98 0.60 -3.84 16 2 C 0.19 6.13 0.66 3.63 0.00 6.13 16 3 N -0.70 -21.34 4.05 -425.63 -1.73 -23.06 16 4 C 0.55 19.32 7.19 86.79 0.62 19.94 16 5 O -0.57 -24.55 12.55 -3.88 -0.05 -24.60 16 6 C -0.16 -4.48 5.87 -20.12 -0.12 -4.60 16 7 C -0.06 -1.09 9.54 22.58 0.22 -0.87 16 8 C -0.12 -1.48 10.02 22.19 0.22 -1.26 16 9 C -0.04 -0.55 9.54 22.58 0.22 -0.33 16 10 C -0.16 -3.61 5.87 -20.12 -0.12 -3.73 16 11 C 0.56 13.01 8.05 86.79 0.70 13.70 16 12 N -0.82 -8.84 8.82 -175.59 -1.55 -10.39 16 13 O -0.59 -20.42 17.18 -3.90 -0.07 -20.48 16 14 C -0.03 -0.88 9.14 22.79 0.21 -0.67 16 15 C -0.14 -6.01 4.66 30.66 0.14 -5.87 16 16 C 0.19 9.88 5.04 86.35 0.44 10.32 16 17 N -0.61 -29.68 2.99 -699.17 -2.09 -31.77 16 18 C -0.26 -14.04 9.58 84.03 0.81 -13.24 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 21 N -0.93 -56.67 11.20 21.65 0.24 -56.42 16 22 Si 0.96 45.41 29.59 68.60 2.03 47.44 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.14 5.12 6.24 86.36 0.54 5.66 16 27 C -0.12 -3.61 4.96 30.67 0.15 -3.46 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.78 6.16 -2.39 -0.01 1.76 16 31 H 0.41 10.18 5.29 -92.71 -0.49 9.69 16 32 H 0.15 2.28 6.39 -2.91 -0.02 2.26 16 33 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.18 0.32 6.39 -2.91 -0.02 0.30 16 35 H 0.42 1.02 6.85 -92.71 -0.64 0.38 16 36 H 0.41 3.54 8.93 -92.71 -0.83 2.71 16 37 H 0.11 4.14 7.23 -2.91 -0.02 4.12 16 38 H 0.05 2.45 6.20 -2.38 -0.01 2.44 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 2.29 6.06 -2.39 -0.01 2.28 16 41 H -0.01 -0.41 7.74 -2.39 -0.02 -0.43 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.06 2.22 7.93 -2.38 -0.02 2.20 16 44 H 0.03 0.87 6.94 -2.39 -0.02 0.86 16 45 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -85.10 364.46 0.93 -84.17 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.90 Total: 19.80 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.05 Total: 15.33 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.12 Total: -121.65 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.12 Total: -45.08 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -85.10 0.93 -84.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045480807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.080 kcal (2) G-P(sol) polarization free energy of solvation -85.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds