Wall clock time and date at job start Tue Mar 31 2020 17:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46146 * 2 1 4 4 C 1.34779 * 120.00096 * 59.99607 * 3 2 1 5 5 O 1.21528 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.48035 * 119.99943 * 180.02562 * 4 3 2 7 7 C 1.39558 * 119.99587 * 180.02562 * 6 4 3 8 8 C 1.37826 * 119.99867 * 180.02562 * 7 6 4 9 9 C 1.39557 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.48035 * 119.99946 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00078 * 179.97438 * 10 9 8 12 12 O 1.21534 * 119.99658 * 0.02562 * 10 9 8 13 13 C 1.39555 * 120.00254 * 0.27257 * 9 8 7 14 14 C 1.37822 * 119.99987 * 359.47246 * 13 9 8 15 15 C 1.53048 * 109.46006 * 119.97233 * 2 1 3 16 16 C 1.53164 * 109.32347 * 181.38480 * 15 2 1 17 17 N 1.46920 * 108.77081 * 305.35338 * 16 15 2 18 18 C 1.36938 * 120.63435 * 233.63108 * 17 16 15 19 19 H 1.08000 * 120.00134 * 151.80622 * 18 17 16 20 20 C 1.38818 * 119.99688 * 331.81434 * 18 17 16 21 21 N 1.31614 * 120.00207 * 343.07891 * 20 18 17 22 22 Si 1.86797 * 119.99748 * 163.07910 * 20 18 17 23 23 H 1.48502 * 109.46952 * 89.99833 * 22 20 18 24 24 H 1.48498 * 109.47042 * 209.99919 * 22 20 18 25 25 H 1.48497 * 109.47234 * 330.00016 * 22 20 18 26 26 C 1.46930 * 118.73889 * 53.61643 * 17 16 15 27 27 C 1.53044 * 109.46189 * 240.02661 * 2 1 3 28 28 H 1.09002 * 109.46829 * 59.99799 * 1 2 3 29 29 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47336 * 300.00037 * 1 2 3 31 31 H 0.96999 * 120.00139 * 240.00080 * 3 2 1 32 32 H 1.08000 * 120.00617 * 359.97333 * 7 6 4 33 33 H 1.07996 * 120.00249 * 179.97438 * 8 7 6 34 34 H 0.96996 * 120.00450 * 0.02562 * 11 10 9 35 35 H 0.97009 * 119.99954 * 179.72606 * 11 10 9 36 36 H 1.07999 * 120.00149 * 179.70066 * 13 9 8 37 37 H 1.07993 * 120.00293 * 180.23177 * 14 13 9 38 38 H 1.08998 * 109.49450 * 301.31984 * 15 2 1 39 39 H 1.08995 * 109.49613 * 61.41863 * 15 2 1 40 40 H 1.09001 * 109.58276 * 185.56884 * 16 15 2 41 41 H 1.09004 * 109.70754 * 65.21266 * 16 15 2 42 42 H 0.96998 * 120.00194 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.58715 * 186.60614 * 26 17 16 44 44 H 1.08999 * 109.70482 * 66.24593 * 26 17 16 45 45 H 1.08999 * 109.49449 * 298.58176 * 27 2 1 46 46 H 1.09002 * 109.49632 * 58.64298 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2112 1.0108 5 8 0.9940 1.8134 1.9225 6 6 2.1850 3.6071 1.0105 7 6 1.8481 4.4662 2.0574 8 6 2.3064 5.7660 2.0569 9 6 3.1078 6.2228 1.0097 10 6 3.6006 7.6188 1.0094 11 7 4.3750 8.0598 -0.0016 12 8 3.3076 8.3668 1.9213 13 6 3.4405 5.3652 -0.0398 14 6 2.9866 4.0639 -0.0366 15 6 2.0399 -0.7209 1.2501 16 6 3.5711 -0.6889 1.2645 17 7 4.0676 -1.2493 0.0004 18 6 4.9753 -2.2746 0.0005 19 1 5.0026 -2.9718 -0.8239 20 6 5.8603 -2.4179 1.0603 21 7 6.0656 -1.4143 1.8866 22 14 6.7600 -4.0353 1.3136 23 1 8.0444 -4.0092 0.5687 24 1 7.0308 -4.2297 2.7607 25 1 5.9199 -5.1527 0.8128 26 6 3.5714 -0.6890 -1.2640 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5757 1.6987 -0.7275 32 1 1.2275 4.1128 2.8676 33 1 2.0454 6.4310 2.8668 34 1 4.6092 7.4627 -0.7293 35 1 4.6946 8.9757 -0.0038 36 1 4.0567 5.7202 -0.8526 37 1 3.2471 3.3992 -0.8469 38 1 1.6575 -0.2208 2.1398 39 1 1.6976 -1.7557 1.2383 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3398 1.3688 42 1 6.6837 -1.5146 2.6274 43 1 3.9416 -1.2850 -2.0981 44 1 3.9145 0.3402 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045637899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:50 Heat of formation + Delta-G solvation = -24.480891 kcal Electronic energy + Delta-G solvation = -28803.623590 eV Core-core repulsion = 24886.564336 eV Total energy + Delta-G solvation = -3917.059254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.66566 -39.93066 -38.34071 -37.09635 -34.47891 -34.17871 -32.54678 -31.39576 -31.08279 -30.29430 -29.91763 -27.45973 -25.22502 -24.09359 -22.83259 -22.33793 -21.88328 -20.95306 -20.21770 -18.81148 -18.56116 -17.71538 -17.08847 -16.72864 -15.45049 -15.31165 -15.09565 -14.93463 -14.73646 -14.63407 -14.38206 -13.95540 -13.78267 -13.72787 -13.44339 -13.27991 -13.14129 -12.68056 -12.53974 -12.31874 -11.87287 -11.64062 -11.42844 -11.34036 -11.16299 -10.96368 -10.72616 -10.44784 -10.39678 -10.27630 -10.06588 -10.00870 -9.81507 -9.59757 -9.26260 -9.22252 -9.17898 -8.63784 -8.47212 -6.68191 -5.79935 -3.23292 0.29986 1.12029 2.34839 3.13809 3.15205 3.34878 3.36100 3.43674 3.45528 3.81242 4.40496 4.47235 4.48185 4.65423 4.80540 5.06780 5.15701 5.23653 5.32421 5.38404 5.44123 5.49995 5.57137 5.69846 5.90297 5.92677 5.97862 6.02753 6.08687 6.13678 6.17077 6.33108 6.41137 6.42054 6.49418 6.54861 6.62388 6.69775 6.78105 6.88539 6.96108 7.03973 7.39576 7.68945 7.77646 7.81408 7.89971 8.43564 8.45158 9.19793 9.83191 10.39608 11.27919 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003199 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.510406 B = 8749.477023 C = 9798.430476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.702 5.702 4 C 0.556 3.444 5 O -0.530 6.530 6 C -0.096 4.096 7 C -0.069 4.069 8 C -0.067 4.067 9 C -0.125 4.125 10 C 0.565 3.435 11 N -0.850 5.850 12 O -0.539 6.539 13 C -0.093 4.093 14 C -0.093 4.093 15 C -0.152 4.152 16 C 0.178 3.822 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.138 4.138 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.396 0.604 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.402 0.598 35 H 0.405 0.595 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.254 0.746 43 H 0.056 0.944 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 14.125 -7.823 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.353 5.353 4 C 0.342 3.658 5 O -0.408 6.408 6 C -0.099 4.099 7 C -0.088 4.088 8 C -0.086 4.086 9 C -0.128 4.128 10 C 0.351 3.649 11 N -0.415 5.415 12 O -0.416 6.416 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.191 4.191 16 C 0.052 3.948 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.094 0.906 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.993 14.135 -6.379 17.447 hybrid contribution 1.240 -0.599 -0.663 1.528 sum -6.753 13.536 -7.042 16.686 Atomic orbital electron populations 1.22231 0.95282 1.01999 1.02367 1.20318 0.92660 0.79761 0.97374 1.46034 1.52547 1.12228 1.24493 1.18145 0.80492 0.84761 0.82376 1.90701 1.38050 1.76611 1.35468 1.20362 0.98890 0.94613 0.96051 1.21308 0.97816 0.92125 0.97579 1.21255 0.94532 0.95462 0.97315 1.20006 1.01801 0.93618 0.97375 1.18343 0.77701 0.87245 0.81656 1.43756 1.54407 1.17386 1.25915 1.90817 1.57763 1.57320 1.35730 1.21167 0.99023 0.93452 0.97486 1.21285 0.96204 0.95670 0.98000 1.22586 1.00825 0.99167 0.96566 1.20680 0.87208 0.96955 0.89963 1.44057 1.48337 1.39564 0.99357 1.19144 1.09758 1.02892 1.06721 0.91797 1.25042 0.97198 0.97351 0.99881 1.70030 1.37278 1.29023 1.18052 0.86335 0.79626 0.83850 0.77162 1.21439 1.21560 1.20497 1.20851 0.90429 0.96087 0.90719 1.22350 0.99698 1.00635 0.95074 0.93455 0.92124 0.90738 0.76794 0.83744 0.84034 0.76798 0.76379 0.85119 0.84812 0.90987 0.92092 0.89796 0.96573 0.93640 0.92596 0.97071 0.90558 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.40 37.16 0.31 -2.02 16 2 C 0.18 2.98 0.66 -131.77 -0.09 2.89 16 3 N -0.70 -10.46 4.05 -48.44 -0.20 -10.65 16 4 C 0.56 8.77 7.20 -12.24 -0.09 8.68 16 5 O -0.53 -9.78 12.55 5.34 0.07 -9.72 16 6 C -0.10 -1.26 5.88 -104.90 -0.62 -1.88 16 7 C -0.07 -0.87 9.58 -39.24 -0.38 -1.25 16 8 C -0.07 -0.77 9.58 -39.24 -0.38 -1.15 16 9 C -0.12 -1.32 5.88 -104.90 -0.62 -1.94 16 10 C 0.56 6.04 8.05 -12.25 -0.10 5.94 16 11 N -0.85 -5.37 8.82 30.57 0.27 -5.10 16 12 O -0.54 -7.80 17.17 5.34 0.09 -7.70 16 13 C -0.09 -0.82 9.53 -39.24 -0.37 -1.20 16 14 C -0.09 -0.98 9.53 -39.24 -0.37 -1.35 16 15 C -0.15 -3.01 4.67 -26.62 -0.12 -3.13 16 16 C 0.18 4.22 5.04 -3.73 -0.02 4.20 16 17 N -0.59 -14.13 2.99 -172.34 -0.52 -14.65 16 18 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 19 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 21 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 22 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C 0.15 2.77 6.24 -3.71 -0.02 2.74 16 27 C -0.14 -2.15 4.96 -26.61 -0.13 -2.28 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.20 6.16 -51.93 -0.32 0.88 16 31 H 0.40 5.13 5.29 -40.82 -0.22 4.91 16 32 H 0.14 1.79 7.64 -52.49 -0.40 1.39 16 33 H 0.14 1.55 7.64 -52.49 -0.40 1.15 16 34 H 0.40 1.46 6.85 -40.82 -0.28 1.18 16 35 H 0.41 2.01 8.93 -40.82 -0.36 1.65 16 36 H 0.13 0.68 6.39 -52.49 -0.34 0.35 16 37 H 0.13 1.18 6.39 -52.49 -0.34 0.84 16 38 H 0.07 1.49 6.20 -51.93 -0.32 1.17 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 2.30 6.06 -51.93 -0.31 1.98 16 41 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -33.99 364.44 -8.55 -42.54 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.13 Total: 7.37 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.22 Total: 1.30 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.18 Total: -55.71 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.16 Total: -17.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.99 -8.55 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045637899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.055 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds