Wall clock time and date at job start Tue Mar 31 2020 17:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46146 * 2 1 4 4 C 1.34779 * 120.00096 * 59.99607 * 3 2 1 5 5 O 1.21528 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.48035 * 119.99943 * 180.02562 * 4 3 2 7 7 C 1.39558 * 119.99587 * 180.02562 * 6 4 3 8 8 C 1.37826 * 119.99867 * 180.02562 * 7 6 4 9 9 C 1.39557 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.48035 * 119.99946 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00078 * 179.97438 * 10 9 8 12 12 O 1.21534 * 119.99658 * 0.02562 * 10 9 8 13 13 C 1.39555 * 120.00254 * 0.27257 * 9 8 7 14 14 C 1.37822 * 119.99987 * 359.47246 * 13 9 8 15 15 C 1.53048 * 109.46006 * 119.97233 * 2 1 3 16 16 C 1.53164 * 109.32347 * 181.38480 * 15 2 1 17 17 N 1.46920 * 108.77081 * 305.35338 * 16 15 2 18 18 C 1.36938 * 120.63435 * 233.63108 * 17 16 15 19 19 H 1.08000 * 120.00134 * 151.80622 * 18 17 16 20 20 C 1.38818 * 119.99688 * 331.81434 * 18 17 16 21 21 N 1.31614 * 120.00207 * 343.07891 * 20 18 17 22 22 Si 1.86797 * 119.99748 * 163.07910 * 20 18 17 23 23 H 1.48502 * 109.46952 * 89.99833 * 22 20 18 24 24 H 1.48498 * 109.47042 * 209.99919 * 22 20 18 25 25 H 1.48497 * 109.47234 * 330.00016 * 22 20 18 26 26 C 1.46930 * 118.73889 * 53.61643 * 17 16 15 27 27 C 1.53044 * 109.46189 * 240.02661 * 2 1 3 28 28 H 1.09002 * 109.46829 * 59.99799 * 1 2 3 29 29 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47336 * 300.00037 * 1 2 3 31 31 H 0.96999 * 120.00139 * 240.00080 * 3 2 1 32 32 H 1.08000 * 120.00617 * 359.97333 * 7 6 4 33 33 H 1.07996 * 120.00249 * 179.97438 * 8 7 6 34 34 H 0.96996 * 120.00450 * 0.02562 * 11 10 9 35 35 H 0.97009 * 119.99954 * 179.72606 * 11 10 9 36 36 H 1.07999 * 120.00149 * 179.70066 * 13 9 8 37 37 H 1.07993 * 120.00293 * 180.23177 * 14 13 9 38 38 H 1.08998 * 109.49450 * 301.31984 * 15 2 1 39 39 H 1.08995 * 109.49613 * 61.41863 * 15 2 1 40 40 H 1.09001 * 109.58276 * 185.56884 * 16 15 2 41 41 H 1.09004 * 109.70754 * 65.21266 * 16 15 2 42 42 H 0.96998 * 120.00194 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.58715 * 186.60614 * 26 17 16 44 44 H 1.08999 * 109.70482 * 66.24593 * 26 17 16 45 45 H 1.08999 * 109.49449 * 298.58176 * 27 2 1 46 46 H 1.09002 * 109.49632 * 58.64298 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2112 1.0108 5 8 0.9940 1.8134 1.9225 6 6 2.1850 3.6071 1.0105 7 6 1.8481 4.4662 2.0574 8 6 2.3064 5.7660 2.0569 9 6 3.1078 6.2228 1.0097 10 6 3.6006 7.6188 1.0094 11 7 4.3750 8.0598 -0.0016 12 8 3.3076 8.3668 1.9213 13 6 3.4405 5.3652 -0.0398 14 6 2.9866 4.0639 -0.0366 15 6 2.0399 -0.7209 1.2501 16 6 3.5711 -0.6889 1.2645 17 7 4.0676 -1.2493 0.0004 18 6 4.9753 -2.2746 0.0005 19 1 5.0026 -2.9718 -0.8239 20 6 5.8603 -2.4179 1.0603 21 7 6.0656 -1.4143 1.8866 22 14 6.7600 -4.0353 1.3136 23 1 8.0444 -4.0092 0.5687 24 1 7.0308 -4.2297 2.7607 25 1 5.9199 -5.1527 0.8128 26 6 3.5714 -0.6890 -1.2640 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5757 1.6987 -0.7275 32 1 1.2275 4.1128 2.8676 33 1 2.0454 6.4310 2.8668 34 1 4.6092 7.4627 -0.7293 35 1 4.6946 8.9757 -0.0038 36 1 4.0567 5.7202 -0.8526 37 1 3.2471 3.3992 -0.8469 38 1 1.6575 -0.2208 2.1398 39 1 1.6976 -1.7557 1.2383 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3398 1.3688 42 1 6.6837 -1.5146 2.6274 43 1 3.9416 -1.2850 -2.0981 44 1 3.9145 0.3402 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045637899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:49 Heat of formation + Delta-G solvation = -48.846298 kcal Electronic energy + Delta-G solvation = -28804.680153 eV Core-core repulsion = 24886.564336 eV Total energy + Delta-G solvation = -3918.115817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76860 -40.94854 -39.43836 -38.39788 -36.13312 -34.94745 -33.90700 -32.95708 -31.94388 -31.62741 -31.39114 -29.06335 -26.23295 -25.83865 -23.93922 -23.71205 -23.02964 -22.33363 -21.30343 -20.15852 -19.54058 -18.81182 -18.52353 -17.79429 -16.83430 -16.57508 -16.20072 -16.14578 -15.91234 -15.80831 -15.55387 -15.41796 -15.17434 -14.85087 -14.78099 -14.61680 -14.49134 -14.02882 -13.55072 -13.52595 -13.24120 -13.18552 -12.94301 -12.80052 -12.54304 -12.53493 -12.24584 -12.18551 -11.95499 -11.74058 -11.40382 -11.29459 -11.27702 -10.77172 -10.57265 -10.51303 -10.18513 -10.10858 -9.90209 -8.63806 -7.85233 -5.30190 -0.62112 0.27683 1.40449 1.45567 1.48674 1.57009 2.10169 2.21362 2.44660 2.52222 2.85606 3.30220 3.53980 3.68047 3.74004 3.83276 3.86286 4.00507 4.09336 4.15287 4.22313 4.30673 4.51178 4.57992 4.69820 4.73019 4.81326 4.88378 4.90339 4.96886 5.07147 5.08043 5.16003 5.18239 5.20729 5.27796 5.37665 5.40487 5.52508 5.63157 5.66446 5.69272 5.79135 5.83994 6.36162 6.40576 6.63168 7.16790 7.23013 7.26877 7.89808 8.40703 9.20249 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003199 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.510406 B = 8749.477023 C = 9798.430476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.187 3.813 3 N -0.696 5.696 4 C 0.551 3.449 5 O -0.566 6.566 6 C -0.116 4.116 7 C -0.081 4.081 8 C -0.076 4.076 9 C -0.127 4.127 10 C 0.563 3.437 11 N -0.825 5.825 12 O -0.584 6.584 13 C -0.076 4.076 14 C -0.090 4.090 15 C -0.140 4.140 16 C 0.194 3.806 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.070 0.930 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.961 3.039 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.140 3.860 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.408 0.592 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.419 0.581 35 H 0.415 0.585 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.038 0.962 41 H -0.006 1.006 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 14.701 -11.357 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.101 3.899 3 N -0.347 5.347 4 C 0.339 3.661 5 O -0.447 6.447 6 C -0.120 4.120 7 C -0.100 4.100 8 C -0.095 4.095 9 C -0.130 4.130 10 C 0.349 3.651 11 N -0.390 5.390 12 O -0.466 6.466 13 C -0.095 4.095 14 C -0.108 4.108 15 C -0.180 4.180 16 C 0.068 3.932 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.088 0.912 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.195 1.195 26 C 0.014 3.986 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.252 0.748 35 H 0.248 0.752 36 H 0.194 0.806 37 H 0.174 0.826 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.901 14.716 -10.015 19.475 hybrid contribution 1.240 -0.720 0.382 1.484 sum -6.660 13.995 -9.633 18.249 Atomic orbital electron populations 1.22121 0.93498 1.02682 1.02648 1.20230 0.93921 0.80102 0.95636 1.45928 1.52549 1.11535 1.24725 1.18576 0.79852 0.85795 0.81846 1.90682 1.39711 1.77516 1.36748 1.20278 1.00756 0.93302 0.97635 1.21247 0.98409 0.92685 0.97630 1.21273 0.95170 0.94991 0.98055 1.20169 1.01284 0.94100 0.97475 1.18376 0.77967 0.86868 0.81926 1.43562 1.52337 1.18180 1.24880 1.90804 1.59746 1.58293 1.37717 1.21577 0.97999 0.92225 0.97654 1.21556 0.95063 0.96702 0.97501 1.22387 0.97819 0.99362 0.98467 1.20298 0.89472 0.94519 0.88955 1.44268 1.48179 1.39609 1.01004 1.19512 1.09288 1.03633 1.06462 0.91237 1.25762 0.98683 1.00076 1.00160 1.70190 1.38368 1.30839 1.18633 0.85369 0.78686 0.80634 0.76322 1.20919 1.22559 1.19530 1.21095 0.92612 0.96542 0.88318 1.22229 0.96867 1.01014 0.96236 0.90892 0.91258 0.92714 0.75434 0.84880 0.84303 0.74848 0.75226 0.80590 0.82579 0.92539 0.92640 0.94333 0.98807 0.94467 0.92081 0.95594 0.90820 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.40 71.98 0.60 -3.47 16 2 C 0.19 5.73 0.66 3.63 0.00 5.73 16 3 N -0.70 -19.60 4.05 -425.44 -1.72 -21.32 16 4 C 0.55 17.37 7.20 86.84 0.63 17.99 16 5 O -0.57 -21.64 12.55 -3.80 -0.05 -21.69 16 6 C -0.12 -3.02 5.88 -20.04 -0.12 -3.14 16 7 C -0.08 -2.10 9.58 22.49 0.22 -1.88 16 8 C -0.08 -1.78 9.58 22.49 0.22 -1.56 16 9 C -0.13 -2.49 5.88 -20.04 -0.12 -2.60 16 10 C 0.56 11.07 8.05 86.84 0.70 11.76 16 11 N -0.82 -7.80 8.82 -175.48 -1.55 -9.35 16 12 O -0.58 -16.71 17.17 -3.82 -0.07 -16.78 16 13 C -0.08 -1.10 9.53 22.49 0.21 -0.88 16 14 C -0.09 -1.66 9.53 22.49 0.21 -1.44 16 15 C -0.14 -5.66 4.67 30.67 0.14 -5.52 16 16 C 0.19 9.46 5.04 86.35 0.44 9.90 16 17 N -0.61 -28.87 2.99 -699.15 -2.09 -30.97 16 18 C -0.26 -13.77 9.58 84.03 0.81 -12.97 16 19 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 20 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 21 N -0.93 -55.56 11.20 21.65 0.24 -55.31 16 22 Si 0.96 44.70 29.59 68.60 2.03 46.72 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.14 4.93 6.24 86.36 0.54 5.47 16 27 C -0.12 -3.44 4.96 30.67 0.15 -3.29 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.73 6.16 -2.39 -0.01 1.71 16 31 H 0.41 9.33 5.29 -92.71 -0.49 8.84 16 32 H 0.13 3.63 7.64 -2.91 -0.02 3.61 16 33 H 0.14 3.24 7.64 -2.91 -0.02 3.21 16 34 H 0.42 1.17 6.85 -92.71 -0.64 0.54 16 35 H 0.42 2.91 8.93 -92.70 -0.83 2.08 16 36 H 0.18 0.85 6.39 -2.91 -0.02 0.84 16 37 H 0.16 2.13 6.39 -2.91 -0.02 2.11 16 38 H 0.06 2.44 6.20 -2.39 -0.01 2.43 16 39 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 40 H 0.04 2.22 6.06 -2.39 -0.01 2.20 16 41 H -0.01 -0.32 7.74 -2.38 -0.02 -0.34 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 44 H 0.03 0.86 6.94 -2.39 -0.02 0.84 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.99 364.44 0.94 -77.05 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.90 Total: 19.99 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.05 Total: 11.65 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -5.12 Total: -116.95 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.11 Total: -38.47 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.99 0.94 -77.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045637899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.203 kcal (2) G-P(sol) polarization free energy of solvation -77.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds