Wall clock time and date at job start Tue Mar 31 2020 16:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38357 * 119.41018 * 2 1 4 4 C 1.38333 * 119.45632 * 179.97438 * 3 2 1 5 5 C 1.39987 * 118.35273 * 0.02562 * 4 3 2 6 6 C 1.47523 * 120.59794 * 179.97438 * 5 4 3 7 7 O 1.21587 * 120.00078 * 221.20208 * 6 5 4 8 8 N 1.34775 * 120.00077 * 41.20145 * 6 5 4 9 9 C 1.44785 * 120.18240 * 185.24055 * 8 6 5 10 10 C 1.51508 * 112.22928 * 264.55682 * 9 8 6 11 11 C 1.51318 * 113.24966 * 285.36208 * 10 9 8 12 12 H 1.09001 * 111.32026 * 186.10028 * 11 10 9 13 13 C 1.54708 * 106.48575 * 307.66960 * 11 10 9 14 14 C 1.54234 * 104.38168 * 89.11946 * 13 11 10 15 15 C 1.50877 * 105.26916 * 11.55562 * 14 13 11 16 16 H 1.08996 * 106.51879 * 121.73661 * 15 14 13 17 17 C 1.49825 * 120.17925 * 4.97220 * 8 6 5 18 18 N 1.48055 * 109.90723 * 7.87923 * 15 14 13 19 19 C 1.36937 * 127.84019 * 155.19994 * 18 15 14 20 20 H 1.08006 * 120.00154 * 179.97438 * 19 18 15 21 21 C 1.38817 * 119.99800 * 359.95155 * 19 18 15 22 22 N 1.31617 * 120.00141 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99722 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47174 * 89.99908 * 23 21 19 25 25 H 1.48500 * 109.47057 * 209.99447 * 23 21 19 26 26 H 1.48498 * 109.47683 * 329.99755 * 23 21 19 27 27 C 1.40281 * 118.80486 * 359.97438 * 5 4 3 28 28 O 1.35428 * 119.80061 * 180.02562 * 27 5 4 29 29 N 1.31886 * 119.40388 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47090 * 89.99759 * 1 2 3 31 31 H 1.08999 * 109.47314 * 209.99827 * 1 2 3 32 32 H 1.09000 * 109.47210 * 330.00156 * 1 2 3 33 33 H 1.07999 * 120.27043 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.82017 * 179.72953 * 4 3 2 35 35 H 1.08999 * 108.92806 * 25.26349 * 9 8 6 36 36 H 1.09004 * 108.93104 * 143.93472 * 9 8 6 37 37 H 1.09002 * 108.73135 * 46.33679 * 10 9 8 38 38 H 1.08996 * 108.73049 * 164.52035 * 10 9 8 39 39 H 1.09004 * 110.45481 * 207.84136 * 13 11 10 40 40 H 1.09005 * 110.45519 * 330.39017 * 13 11 10 41 41 H 1.08997 * 110.29081 * 130.50672 * 14 13 11 42 42 H 1.09003 * 110.28274 * 252.61514 * 14 13 11 43 43 H 1.09007 * 109.54183 * 270.55210 * 17 8 6 44 44 H 1.08997 * 109.54653 * 30.82531 * 17 8 6 45 45 H 0.96998 * 120.00353 * 180.02562 * 22 21 19 46 46 H 0.96702 * 113.99765 * 270.00128 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0005 5 6 4.2355 -0.0250 0.0005 6 6 5.7096 -0.0816 0.0005 7 8 6.2867 -0.8966 -0.6931 8 7 6.4167 0.7700 0.7693 9 6 7.8621 0.7953 0.6881 10 6 8.5111 -0.0661 1.7521 11 6 8.4628 0.5519 3.1325 12 1 9.0294 -0.0397 3.8516 13 6 9.0430 1.9794 2.9949 14 6 7.8222 2.8580 2.6538 15 6 6.6199 1.9804 2.9001 16 1 6.0086 2.4934 3.6426 17 6 5.7111 1.7000 1.7085 18 7 7.0426 0.7144 3.5409 19 6 6.2948 -0.1184 4.3299 20 1 6.7347 -1.0179 4.7346 21 6 4.9715 0.1939 4.6098 22 7 4.4357 1.2905 4.1174 23 14 3.9513 -0.9425 5.6855 24 1 4.0887 -0.5343 7.1067 25 1 2.5247 -0.8575 5.2819 26 1 4.4293 -2.3391 5.5233 27 6 3.4757 -1.2042 0.0005 28 8 4.0990 -2.4066 0.0010 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1343 -0.0038 35 1 8.1674 0.4342 -0.2940 36 1 8.2052 1.8229 0.8089 37 1 8.0014 -1.0292 1.7818 38 1 9.5539 -0.2310 1.4809 39 1 9.4923 2.3002 3.9348 40 1 9.7762 2.0166 2.1891 41 1 7.7917 3.7319 3.3045 42 1 7.8579 3.1652 1.6086 43 1 5.4807 2.6327 1.1934 44 1 4.7880 1.2362 2.0560 45 1 3.5112 1.5089 4.3133 46 1 4.2803 -2.7559 -0.8823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045854001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:10 Heat of formation + Delta-G solvation = 12.208534 kcal Electronic energy + Delta-G solvation = -30950.717034 eV Core-core repulsion = 27035.248753 eV Total energy + Delta-G solvation = -3915.468281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64540 -39.56801 -37.85432 -36.87608 -34.11672 -33.43782 -32.55610 -31.45937 -31.37551 -29.51327 -28.16567 -26.83014 -25.88911 -23.94510 -23.24629 -22.82918 -21.74001 -19.94037 -19.38800 -18.66518 -18.21361 -17.35412 -16.71890 -15.95255 -15.57690 -15.36808 -15.15026 -14.83374 -14.46821 -14.18607 -13.87852 -13.78688 -13.50243 -13.06595 -12.87436 -12.53205 -12.48264 -12.15711 -12.05796 -11.90063 -11.78710 -11.49901 -11.34732 -11.25971 -11.18478 -10.89037 -10.82614 -10.78350 -10.22572 -10.06813 -9.76199 -9.75177 -9.54981 -9.45583 -9.35876 -9.01130 -8.69103 -8.50244 -7.82085 -6.92515 -5.77512 -3.13418 0.98664 1.40022 3.20375 3.37976 3.45155 3.46925 3.61925 3.80062 4.08657 4.43990 4.71307 4.84401 5.01126 5.17508 5.25332 5.33054 5.43349 5.50744 5.52414 5.57072 5.58719 5.67458 5.73204 5.74157 5.88708 5.99489 6.01956 6.16053 6.18268 6.19901 6.24165 6.26359 6.37620 6.48927 6.61435 6.65850 6.70159 6.76095 6.85072 7.08398 7.28596 7.39542 7.55509 7.70290 7.79662 8.06316 8.14537 8.20526 8.78719 9.11694 9.71256 10.43687 11.29587 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.006370 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.236745 B = 4394.746857 C = 5551.457460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.162 3.838 3 C -0.188 4.188 4 C -0.019 4.019 5 C -0.184 4.184 6 C 0.569 3.431 7 O -0.559 6.559 8 N -0.582 5.582 9 C 0.118 3.882 10 C -0.147 4.147 11 C 0.149 3.851 12 H 0.062 0.938 13 C -0.131 4.131 14 C -0.124 4.124 15 C 0.141 3.859 16 H 0.104 0.896 17 C 0.110 3.890 18 N -0.579 5.579 19 C -0.199 4.199 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.925 5.925 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.366 3.634 28 O -0.468 6.468 29 N -0.511 5.511 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.033 0.967 44 H 0.127 0.873 45 H 0.252 0.748 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 4.952 -9.053 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 C -0.208 4.208 4 C -0.045 4.045 5 C -0.191 4.191 6 C 0.356 3.644 7 O -0.440 6.440 8 N -0.312 5.312 9 C -0.005 4.005 10 C -0.187 4.187 11 C 0.042 3.958 12 H 0.080 0.920 13 C -0.169 4.169 14 C -0.162 4.162 15 C 0.034 3.966 16 H 0.122 0.878 17 C -0.011 4.011 18 N -0.301 5.301 19 C -0.327 4.327 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.186 3.814 28 O -0.274 6.274 29 N -0.231 5.231 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.144 0.856 45 H 0.062 0.938 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.462 3.725 -8.633 9.515 hybrid contribution -0.037 0.021 0.205 0.210 sum -1.499 3.746 -8.428 9.344 Atomic orbital electron populations 1.20759 0.88632 1.03803 1.02949 1.21109 0.96730 0.87377 0.92425 1.21797 0.94512 0.99261 1.05229 1.21799 0.94320 0.97312 0.91092 1.21004 0.95430 0.94256 1.08372 1.17776 0.85877 0.80693 0.80033 1.90672 1.71410 1.37346 1.44526 1.48365 1.06279 1.37497 1.39102 1.20832 0.80399 1.00729 0.98546 1.21948 0.98740 1.00729 0.97333 1.21179 0.87843 0.93705 0.93083 0.91996 1.22674 0.97053 0.96923 1.00298 1.21960 0.96195 0.98220 0.99830 1.20586 0.93161 0.88187 0.94638 0.87799 1.23765 0.99381 0.90105 0.87894 1.44977 1.06023 1.23309 1.55785 1.19039 0.92293 1.01179 1.20142 0.90352 1.24604 0.96588 0.98115 1.01247 1.69662 1.13656 1.25270 1.48944 0.86112 0.79736 0.80104 0.79968 1.21679 1.21664 1.20818 1.18977 0.86076 0.84816 0.91551 1.84714 1.76660 1.32438 1.33634 1.67007 1.09389 1.30448 1.16222 0.90311 0.90372 0.90329 0.84175 0.83802 0.91699 0.90433 0.92117 0.92868 0.92394 0.92093 0.92162 0.92332 0.94900 0.85579 0.93793 0.73967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.16 36.00 0.37 -0.79 16 2 C 0.16 2.49 6.78 -82.53 -0.56 1.93 16 3 C -0.19 -2.70 9.71 -39.50 -0.38 -3.09 16 4 C -0.02 -0.32 7.92 -38.89 -0.31 -0.63 16 5 C -0.18 -3.61 5.02 -104.69 -0.53 -4.13 16 6 C 0.57 12.06 7.11 -12.48 -0.09 11.97 16 7 O -0.56 -12.66 15.75 -9.59 -0.15 -12.81 16 8 N -0.58 -11.73 2.86 -174.72 -0.50 -12.23 16 9 C 0.12 2.16 5.11 -5.71 -0.03 2.13 16 10 C -0.15 -2.77 5.01 -28.33 -0.14 -2.92 16 11 C 0.15 2.94 4.08 -66.68 -0.27 2.67 16 12 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.13 -2.12 6.01 -25.19 -0.15 -2.27 16 14 C -0.12 -2.10 5.78 -27.15 -0.16 -2.26 16 15 C 0.14 2.99 1.96 -68.42 -0.13 2.86 16 16 H 0.10 2.55 6.09 -51.93 -0.32 2.23 16 17 C 0.11 2.25 4.20 -2.46 -0.01 2.24 16 18 N -0.58 -13.65 2.69 -156.78 -0.42 -14.07 16 19 C -0.20 -5.31 10.40 -15.06 -0.16 -5.46 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 22 N -0.93 -24.38 8.14 55.49 0.45 -23.93 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.37 7.28 7.74 -16.61 -0.13 7.15 16 28 O -0.47 -9.20 12.39 -32.86 -0.41 -9.60 16 29 N -0.51 -9.44 10.28 -9.21 -0.09 -9.54 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.11 6.08 -52.49 -0.32 1.79 16 35 H 0.06 1.18 7.30 -51.93 -0.38 0.80 16 36 H 0.08 1.26 3.92 -51.93 -0.20 1.06 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.85 7.38 -51.93 -0.38 0.46 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 43 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 44 H 0.13 2.98 4.26 -51.93 -0.22 2.76 16 45 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 46 H 0.40 5.94 9.06 45.56 0.41 6.35 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -32.12 351.91 -9.06 -41.17 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.44 Total: 9.38 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.78 Total: 9.00 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.57 Total: -59.76 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.56 Total: -22.41 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.12 -9.06 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045854001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.381 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds