Wall clock time and date at job start Tue Mar 31 2020 16:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38357 * 119.41018 * 2 1 4 4 C 1.38333 * 119.45632 * 179.97438 * 3 2 1 5 5 C 1.39987 * 118.35273 * 0.02562 * 4 3 2 6 6 C 1.47523 * 120.59794 * 179.97438 * 5 4 3 7 7 O 1.21587 * 120.00078 * 221.20208 * 6 5 4 8 8 N 1.34775 * 120.00077 * 41.20145 * 6 5 4 9 9 C 1.44785 * 120.18240 * 185.24055 * 8 6 5 10 10 C 1.51508 * 112.22928 * 264.55682 * 9 8 6 11 11 C 1.51318 * 113.24966 * 285.36208 * 10 9 8 12 12 H 1.09001 * 111.32026 * 186.10028 * 11 10 9 13 13 C 1.54708 * 106.48575 * 307.66960 * 11 10 9 14 14 C 1.54234 * 104.38168 * 89.11946 * 13 11 10 15 15 C 1.50877 * 105.26916 * 11.55562 * 14 13 11 16 16 H 1.08996 * 106.51879 * 121.73661 * 15 14 13 17 17 C 1.49825 * 120.17925 * 4.97220 * 8 6 5 18 18 N 1.48055 * 109.90723 * 7.87923 * 15 14 13 19 19 C 1.36937 * 127.84019 * 155.19994 * 18 15 14 20 20 H 1.08006 * 120.00154 * 179.97438 * 19 18 15 21 21 C 1.38817 * 119.99800 * 359.95155 * 19 18 15 22 22 N 1.31617 * 120.00141 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99722 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47174 * 89.99908 * 23 21 19 25 25 H 1.48500 * 109.47057 * 209.99447 * 23 21 19 26 26 H 1.48498 * 109.47683 * 329.99755 * 23 21 19 27 27 C 1.40281 * 118.80486 * 359.97438 * 5 4 3 28 28 O 1.35428 * 119.80061 * 180.02562 * 27 5 4 29 29 N 1.31886 * 119.40388 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47090 * 89.99759 * 1 2 3 31 31 H 1.08999 * 109.47314 * 209.99827 * 1 2 3 32 32 H 1.09000 * 109.47210 * 330.00156 * 1 2 3 33 33 H 1.07999 * 120.27043 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.82017 * 179.72953 * 4 3 2 35 35 H 1.08999 * 108.92806 * 25.26349 * 9 8 6 36 36 H 1.09004 * 108.93104 * 143.93472 * 9 8 6 37 37 H 1.09002 * 108.73135 * 46.33679 * 10 9 8 38 38 H 1.08996 * 108.73049 * 164.52035 * 10 9 8 39 39 H 1.09004 * 110.45481 * 207.84136 * 13 11 10 40 40 H 1.09005 * 110.45519 * 330.39017 * 13 11 10 41 41 H 1.08997 * 110.29081 * 130.50672 * 14 13 11 42 42 H 1.09003 * 110.28274 * 252.61514 * 14 13 11 43 43 H 1.09007 * 109.54183 * 270.55210 * 17 8 6 44 44 H 1.08997 * 109.54653 * 30.82531 * 17 8 6 45 45 H 0.96998 * 120.00353 * 180.02562 * 22 21 19 46 46 H 0.96702 * 113.99765 * 270.00128 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0005 5 6 4.2355 -0.0250 0.0005 6 6 5.7096 -0.0816 0.0005 7 8 6.2867 -0.8966 -0.6931 8 7 6.4167 0.7700 0.7693 9 6 7.8621 0.7953 0.6881 10 6 8.5111 -0.0661 1.7521 11 6 8.4628 0.5519 3.1325 12 1 9.0294 -0.0397 3.8516 13 6 9.0430 1.9794 2.9949 14 6 7.8222 2.8580 2.6538 15 6 6.6199 1.9804 2.9001 16 1 6.0086 2.4934 3.6426 17 6 5.7111 1.7000 1.7085 18 7 7.0426 0.7144 3.5409 19 6 6.2948 -0.1184 4.3299 20 1 6.7347 -1.0179 4.7346 21 6 4.9715 0.1939 4.6098 22 7 4.4357 1.2905 4.1174 23 14 3.9513 -0.9425 5.6855 24 1 4.0887 -0.5343 7.1067 25 1 2.5247 -0.8575 5.2819 26 1 4.4293 -2.3391 5.5233 27 6 3.4757 -1.2042 0.0005 28 8 4.0990 -2.4066 0.0010 29 7 2.1545 -1.1490 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1343 -0.0038 35 1 8.1674 0.4342 -0.2940 36 1 8.2052 1.8229 0.8089 37 1 8.0014 -1.0292 1.7818 38 1 9.5539 -0.2310 1.4809 39 1 9.4923 2.3002 3.9348 40 1 9.7762 2.0166 2.1891 41 1 7.7917 3.7319 3.3045 42 1 7.8579 3.1652 1.6086 43 1 5.4807 2.6327 1.1934 44 1 4.7880 1.2362 2.0560 45 1 3.5112 1.5089 4.3133 46 1 4.2803 -2.7559 -0.8823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045854001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:09 Heat of formation + Delta-G solvation = -10.629969 kcal Electronic energy + Delta-G solvation = -30951.707385 eV Core-core repulsion = 27035.248753 eV Total energy + Delta-G solvation = -3916.458633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05917 -41.02951 -39.40836 -38.29385 -35.71177 -35.15707 -33.98137 -33.00702 -32.60307 -31.28527 -29.46106 -28.25226 -27.45227 -25.75199 -24.64279 -24.14146 -23.10924 -21.41788 -21.08930 -20.16458 -19.62720 -19.02891 -18.12832 -17.56440 -16.98525 -16.85507 -16.77034 -16.53233 -16.02780 -15.63187 -15.47283 -15.12064 -14.80551 -14.51639 -14.36035 -14.10577 -13.68355 -13.60170 -13.47636 -13.17305 -13.07639 -13.01789 -12.95156 -12.79842 -12.70267 -12.67047 -12.55878 -12.34202 -12.04937 -11.64340 -11.48878 -11.29873 -11.19138 -10.87846 -10.77105 -10.59925 -10.38947 -9.80739 -9.39832 -8.78725 -7.78198 -5.12021 -0.33296 0.12154 1.37320 1.41354 1.45617 1.67060 2.19388 2.45975 2.49943 2.71172 3.30371 3.40906 3.59989 3.67566 3.76543 3.94872 4.02302 4.12972 4.19542 4.27678 4.35737 4.40518 4.42751 4.55360 4.64524 4.70453 4.74785 4.79242 4.85599 4.91169 4.96793 5.03330 5.10456 5.11920 5.16491 5.24241 5.28360 5.34845 5.50084 5.53314 5.58820 5.76152 5.87272 5.94319 6.33259 6.47145 6.51650 6.82977 7.15627 7.22170 7.78731 8.52534 9.24632 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.006370 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.236745 B = 4394.746857 C = 5551.457460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.153 3.847 3 C -0.177 4.177 4 C -0.021 4.021 5 C -0.213 4.213 6 C 0.560 3.440 7 O -0.586 6.586 8 N -0.582 5.582 9 C 0.114 3.886 10 C -0.137 4.137 11 C 0.137 3.863 12 H 0.053 0.947 13 C -0.117 4.117 14 C -0.118 4.118 15 C 0.144 3.856 16 H 0.069 0.931 17 C 0.115 3.885 18 N -0.600 5.600 19 C -0.213 4.213 20 H 0.061 0.939 21 C -0.047 4.047 22 N -0.922 5.922 23 Si 0.948 3.052 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.294 1.294 27 C 0.339 3.661 28 O -0.490 6.490 29 N -0.533 5.533 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.011 0.989 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.246 0.754 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 7.804 -9.986 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 C -0.196 4.196 4 C -0.046 4.046 5 C -0.219 4.219 6 C 0.349 3.651 7 O -0.469 6.469 8 N -0.312 5.312 9 C -0.008 4.008 10 C -0.177 4.177 11 C 0.031 3.969 12 H 0.071 0.929 13 C -0.156 4.156 14 C -0.156 4.156 15 C 0.037 3.963 16 H 0.086 0.914 17 C -0.006 4.006 18 N -0.323 5.323 19 C -0.342 4.342 20 H 0.079 0.921 21 C -0.240 4.240 22 N -0.572 5.572 23 Si 0.779 3.221 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.221 1.221 27 C 0.160 3.840 28 O -0.300 6.300 29 N -0.254 5.254 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.203 0.797 34 H 0.179 0.821 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.030 0.970 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.056 0.944 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -1.421 6.600 -9.569 11.710 hybrid contribution -0.094 -0.902 0.502 1.037 sum -1.515 5.697 -9.066 10.814 Atomic orbital electron populations 1.20914 0.85357 1.04685 1.04857 1.21994 0.98875 0.86985 0.90620 1.22294 0.93807 1.00707 1.02842 1.22076 0.95465 0.96682 0.90422 1.21029 0.94667 0.95529 1.10704 1.18143 0.86806 0.80373 0.79823 1.90630 1.72180 1.38309 1.45747 1.48421 1.07075 1.37196 1.38499 1.21011 0.79415 1.02209 0.98172 1.21869 1.00192 0.98278 0.97405 1.21421 0.86123 0.96389 0.92993 0.92863 1.22599 0.97231 0.93572 1.02159 1.21927 0.94143 0.97654 1.01867 1.20670 0.94611 0.87276 0.93716 0.91359 1.23494 0.98027 0.90926 0.88182 1.45133 1.07565 1.23801 1.55763 1.19062 0.92998 1.01359 1.20787 0.92083 1.25019 0.97249 0.99255 1.02495 1.69817 1.13143 1.25262 1.48991 0.85533 0.78385 0.78599 0.79566 1.20889 1.22345 1.22076 1.19216 0.86906 0.84822 0.93077 1.84651 1.77052 1.33096 1.35159 1.67066 1.08775 1.32292 1.17261 0.87710 0.91277 0.87608 0.79719 0.82065 0.91597 0.87385 0.97043 0.89548 0.91666 0.88528 0.90961 0.89582 0.91702 0.88703 0.94365 0.72529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 10.16 71.24 0.72 -1.23 16 2 C 0.15 4.48 6.78 42.58 0.29 4.77 16 3 C -0.18 -4.64 9.71 22.32 0.22 -4.42 16 4 C -0.02 -0.66 7.92 22.72 0.18 -0.48 16 5 C -0.21 -8.45 5.02 -19.91 -0.10 -8.55 16 6 C 0.56 24.14 7.11 86.69 0.62 24.76 16 7 O -0.59 -27.37 15.75 10.24 0.16 -27.21 16 8 N -0.58 -23.07 2.86 -824.97 -2.36 -25.43 16 9 C 0.11 3.96 5.11 86.21 0.44 4.40 16 10 C -0.14 -5.05 5.01 29.56 0.15 -4.90 16 11 C 0.14 5.27 4.08 44.61 0.18 5.45 16 12 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 13 C -0.12 -3.37 6.01 31.59 0.19 -3.18 16 14 C -0.12 -3.56 5.78 30.32 0.18 -3.39 16 15 C 0.14 5.90 1.96 43.83 0.09 5.98 16 16 H 0.07 3.31 6.09 -2.39 -0.01 3.29 16 17 C 0.12 4.57 4.20 85.55 0.36 4.93 16 18 N -0.60 -28.42 2.69 -649.94 -1.75 -30.17 16 19 C -0.21 -11.71 10.40 84.03 0.87 -10.84 16 20 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 21 C -0.05 -2.55 5.48 84.86 0.47 -2.08 16 22 N -0.92 -49.04 8.14 21.65 0.18 -48.87 16 23 Si 0.95 46.97 29.55 68.60 2.03 49.00 16 24 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 26 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 27 C 0.34 13.97 7.74 85.13 0.66 14.63 16 28 O -0.49 -20.55 12.39 -73.01 -0.90 -21.45 16 29 N -0.53 -19.91 10.28 -296.06 -3.04 -22.95 16 30 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.16 4.34 6.08 -2.91 -0.02 4.32 16 35 H 0.07 2.28 7.30 -2.39 -0.02 2.26 16 36 H 0.11 3.05 3.92 -2.39 -0.01 3.04 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.10 2.14 7.38 -2.38 -0.02 2.12 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 2.15 6.14 -2.39 -0.01 2.13 16 43 H 0.07 2.12 6.94 -2.38 -0.02 2.10 16 44 H 0.10 4.47 4.26 -2.39 -0.01 4.46 16 45 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 46 H 0.41 13.41 9.06 -74.06 -0.67 12.74 16 Total: -1.00 -74.15 351.91 0.17 -73.98 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.36 Total: 27.26 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 5.50 Total: 25.85 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -6.98 Total: -127.42 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.74 Total: -48.66 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.15 0.17 -73.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045854001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.350 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds