Wall clock time and date at job start Tue Mar 31 2020 17:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 110.78085 * 2 1 4 4 C 1.34780 * 119.99584 * 298.21116 * 3 2 1 5 5 O 1.21543 * 120.00022 * 359.97438 * 4 3 2 6 6 C 1.47924 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.39474 * 119.71699 * 179.97438 * 6 4 3 8 8 C 1.38404 * 119.07176 * 180.02562 * 7 6 4 9 9 C 1.38696 * 118.71813 * 359.84368 * 8 7 6 10 10 C 1.39550 * 119.04762 * 0.21848 * 9 8 7 11 11 N 1.31299 * 120.84160 * 359.58306 * 10 9 8 12 12 O 1.35527 * 121.72671 * 180.29476 * 9 8 7 13 13 C 1.42883 * 117.73033 * 342.55480 * 12 9 8 14 14 C 1.53398 * 108.50604 * 49.36896 * 13 12 9 15 15 C 1.50486 * 119.63207 * 179.59624 * 8 7 6 16 16 C 1.55411 * 110.85132 * 123.29518 * 2 1 3 17 17 C 1.54907 * 101.66291 * 153.70342 * 16 2 1 18 18 N 1.47420 * 104.83467 * 323.07233 * 17 16 2 19 19 C 1.36935 * 125.65191 * 204.09132 * 18 17 16 20 20 H 1.07998 * 120.00239 * 169.98119 * 19 18 17 21 21 C 1.38810 * 119.99952 * 349.99110 * 19 18 17 22 22 N 1.31625 * 120.00077 * 350.41594 * 21 19 18 23 23 Si 1.86803 * 120.00274 * 170.41859 * 21 19 18 24 24 H 1.48495 * 109.47346 * 94.13589 * 23 21 19 25 25 H 1.48496 * 109.47417 * 214.13970 * 23 21 19 26 26 H 1.48498 * 109.46994 * 334.13857 * 23 21 19 27 27 C 1.47028 * 108.70124 * 24.13395 * 18 17 16 28 28 H 1.08996 * 109.47164 * 181.78611 * 1 2 3 29 29 H 1.08996 * 109.47567 * 301.79053 * 1 2 3 30 30 H 1.09004 * 109.46996 * 61.79004 * 1 2 3 31 31 H 0.96997 * 120.00496 * 118.20585 * 3 2 1 32 32 H 1.08003 * 120.46419 * 359.97438 * 7 6 4 33 33 H 1.07995 * 119.57926 * 179.86429 * 10 9 8 34 34 H 1.08999 * 109.63116 * 169.07074 * 13 12 9 35 35 H 1.09003 * 109.62872 * 289.66552 * 13 12 9 36 36 H 1.09002 * 109.68882 * 55.03927 * 14 13 12 37 37 H 1.08999 * 109.68839 * 175.61007 * 14 13 12 38 38 H 1.08999 * 109.45869 * 282.69454 * 15 8 7 39 39 H 1.08998 * 109.45639 * 42.64334 * 15 8 7 40 40 H 1.08993 * 110.89037 * 35.63327 * 16 2 1 41 41 H 1.09003 * 111.06706 * 271.84979 * 16 2 1 42 42 H 1.09000 * 110.36383 * 204.23662 * 17 16 2 43 43 H 1.09003 * 110.37097 * 81.91698 * 17 16 2 44 44 H 0.96996 * 119.99640 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.88146 * 118.35785 * 27 18 17 46 46 H 1.09002 * 109.87992 * 239.36953 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7729 2.1954 -1.0286 5 8 1.0924 1.8036 -1.9564 6 6 2.2982 3.5783 -1.0290 7 6 2.0085 4.4276 -2.0967 8 6 2.5073 5.7186 -2.0835 9 6 3.2774 6.1246 -1.0038 10 6 3.5273 5.2195 0.0286 11 7 3.0372 4.0020 -0.0102 12 8 3.7912 7.3762 -0.9254 13 6 3.8514 8.1467 -2.1271 14 6 2.4794 8.0902 -2.8109 15 6 2.2101 6.6428 -3.2334 16 6 2.0831 -0.7973 1.2139 17 6 3.4656 -1.2539 0.6849 18 7 3.2438 -1.5535 -0.7414 19 6 4.0006 -2.4006 -1.5061 20 1 3.6663 -2.6802 -2.4942 21 6 5.1974 -2.9002 -1.0111 22 7 5.6994 -2.4189 0.1065 23 14 6.0956 -4.2553 -1.9310 24 1 7.1090 -3.6531 -2.8340 25 1 6.7700 -5.1514 -0.9577 26 1 5.1217 -5.0389 -2.7327 27 6 2.0760 -0.7912 -1.2071 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3634 0.5414 0.8734 30 1 -0.3633 0.4858 -0.9056 31 1 2.5930 1.6823 0.7402 32 1 1.4042 4.0825 -2.9226 33 1 4.1278 5.5258 0.8724 34 1 4.0985 9.1808 -1.8871 35 1 4.6089 7.7307 -2.7913 36 1 1.7081 8.4189 -2.1143 37 1 2.4802 8.7351 -3.6897 38 1 2.8483 6.3869 -4.0792 39 1 1.1646 6.5377 -3.5228 40 1 1.4480 -1.6542 1.4381 41 1 2.1919 -0.1549 2.0878 42 1 3.7975 -2.1478 1.2131 43 1 4.1973 -0.4536 0.7952 44 1 6.5359 -2.7678 0.4521 45 1 2.3742 -0.1025 -1.9977 46 1 1.3120 -1.4740 -1.5791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046806721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:06 Heat of formation + Delta-G solvation = -12.574599 kcal Electronic energy + Delta-G solvation = -28623.403764 eV Core-core repulsion = 24706.860806 eV Total energy + Delta-G solvation = -3916.542958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38839 -39.88646 -38.50026 -37.04208 -35.01250 -33.92876 -32.28513 -31.62540 -30.88853 -29.74163 -28.60313 -26.51279 -25.65521 -25.14118 -23.69228 -23.37878 -22.04172 -20.40776 -20.02283 -18.93743 -18.08952 -17.98899 -17.18493 -16.60908 -15.89999 -15.65593 -15.23937 -14.90104 -14.81783 -14.59900 -14.37396 -14.10528 -13.91533 -13.70285 -13.60850 -13.20974 -12.83303 -12.76766 -12.56311 -12.15116 -11.94479 -11.90015 -11.64215 -11.51216 -11.37175 -11.14215 -10.92275 -10.75880 -10.37164 -10.32771 -10.06912 -10.02077 -9.86035 -9.70661 -9.62226 -9.30425 -8.70081 -8.50690 -8.46934 -6.69839 -5.67291 -2.98268 0.62337 0.97037 2.74646 2.92908 3.41231 3.44580 3.49885 3.52435 3.86061 4.08828 4.15230 4.20517 4.33787 4.40753 4.56403 4.70945 4.87000 4.94431 5.04559 5.05437 5.20827 5.24509 5.39752 5.44338 5.51712 5.55702 5.60887 5.61884 5.71211 5.80112 5.87823 6.06843 6.12149 6.21791 6.28152 6.40316 6.51006 6.57019 6.77188 6.89061 6.92031 7.21285 7.54480 7.60783 7.63579 7.84150 7.99909 8.33668 8.56706 9.27748 9.89591 10.57860 11.46148 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002939 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.271903 B = 9526.374587 C =10224.569339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 N -0.686 5.686 4 C 0.575 3.425 5 O -0.535 6.535 6 C 0.051 3.949 7 C -0.074 4.074 8 C -0.131 4.131 9 C 0.098 3.902 10 C 0.082 3.918 11 N -0.423 5.423 12 O -0.306 6.306 13 C 0.057 3.943 14 C -0.160 4.160 15 C -0.081 4.081 16 C -0.148 4.148 17 C 0.174 3.826 18 N -0.603 5.603 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.136 3.864 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.251 0.749 45 H 0.034 0.966 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 22.539 -1.211 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.072 3.928 3 N -0.336 5.336 4 C 0.360 3.640 5 O -0.412 6.412 6 C -0.086 4.086 7 C -0.095 4.095 8 C -0.140 4.140 9 C 0.049 3.951 10 C -0.081 4.081 11 N -0.135 5.135 12 O -0.218 6.218 13 C -0.018 4.018 14 C -0.198 4.198 15 C -0.118 4.118 16 C -0.187 4.187 17 C 0.049 3.951 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.010 3.990 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.244 0.756 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.874 21.606 -1.028 23.019 hybrid contribution 0.744 0.142 -1.042 1.288 sum -7.130 21.748 -2.070 22.980 Atomic orbital electron populations 1.22025 0.94173 1.02169 1.02335 1.21420 0.92973 0.80327 0.98077 1.45810 1.52627 1.12233 1.22907 1.17613 0.80231 0.83500 0.82689 1.90746 1.39365 1.75812 1.35317 1.21190 0.99382 0.95774 0.92272 1.21869 0.97451 0.91539 0.98628 1.20073 1.00072 0.96203 0.97607 1.20007 0.93659 0.85683 0.95704 1.22410 1.00151 0.87093 0.98412 1.67564 1.06606 1.14940 1.24377 1.85964 1.77846 1.23154 1.34816 1.23086 0.97234 0.96050 0.85398 1.22265 0.98061 0.97193 1.02247 1.20495 1.03528 0.92455 0.95283 1.23392 1.01029 0.98931 0.95305 1.21398 0.89576 0.99401 0.84733 1.44487 1.31171 1.50433 1.06836 1.19025 0.99725 1.18093 0.98330 0.90731 1.24799 0.96857 1.00706 0.98200 1.69955 1.20557 1.43864 1.22330 0.86137 0.79561 0.81708 0.78585 1.21756 1.21670 1.20637 1.21601 0.90463 0.93032 0.93926 0.91660 0.93071 0.91053 0.75605 0.83130 0.81266 0.87044 0.91337 0.90195 0.89250 0.89546 0.89140 0.90528 0.91615 0.91192 0.95549 0.93845 0.94778 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.42 37.16 0.31 -2.09 16 2 C 0.16 2.97 0.81 -129.85 -0.11 2.87 16 3 N -0.69 -12.26 5.14 -46.70 -0.24 -12.50 16 4 C 0.58 10.38 7.03 -12.29 -0.09 10.29 16 5 O -0.54 -10.66 13.28 5.33 0.07 -10.59 16 6 C 0.05 0.79 6.75 -83.02 -0.56 0.23 16 7 C -0.07 -0.97 9.30 -39.06 -0.36 -1.34 16 8 C -0.13 -1.43 5.75 -104.50 -0.60 -2.03 16 9 C 0.10 1.10 6.50 -38.92 -0.25 0.85 16 10 C 0.08 1.00 11.12 -17.29 -0.19 0.81 16 11 N -0.42 -6.20 9.52 -9.61 -0.09 -6.30 16 12 O -0.31 -2.94 10.29 -18.28 -0.19 -3.13 16 13 C 0.06 0.35 7.01 37.36 0.26 0.62 16 14 C -0.16 -0.87 6.20 -26.44 -0.16 -1.04 16 15 C -0.08 -0.59 5.90 -27.90 -0.16 -0.75 16 16 C -0.15 -2.77 6.10 -24.45 -0.15 -2.92 16 17 C 0.17 4.26 5.41 -2.53 -0.01 4.25 16 18 N -0.60 -16.13 3.39 -170.08 -0.58 -16.71 16 19 C -0.22 -6.50 10.24 -15.06 -0.15 -6.66 16 20 H 0.07 2.13 7.85 -52.49 -0.41 1.72 16 21 C -0.01 -0.27 5.40 -17.43 -0.09 -0.37 16 22 N -0.92 -27.53 10.68 55.49 0.59 -26.94 16 23 Si 0.91 22.72 29.56 -169.99 -5.03 17.70 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.14 3.16 6.12 -3.06 -0.02 3.14 16 28 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.23 6.46 -51.93 -0.34 0.89 16 31 H 0.41 6.87 7.79 -40.82 -0.32 6.56 16 32 H 0.15 1.87 7.64 -52.48 -0.40 1.47 16 33 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 41 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 42 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 43 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.03 0.87 6.47 -51.93 -0.34 0.53 16 46 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -34.08 367.86 -9.02 -43.11 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.76 Total: 3.97 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.35 Total: 5.85 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.32 Total: -62.44 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.12 Total: -13.72 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.08 -9.02 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046806721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.531 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds