Wall clock time and date at job start Tue Mar 31 2020 17:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 110.78085 * 2 1 4 4 C 1.34780 * 119.99584 * 298.21116 * 3 2 1 5 5 O 1.21543 * 120.00022 * 359.97438 * 4 3 2 6 6 C 1.47924 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.39474 * 119.71699 * 179.97438 * 6 4 3 8 8 C 1.38404 * 119.07176 * 180.02562 * 7 6 4 9 9 C 1.38696 * 118.71813 * 359.84368 * 8 7 6 10 10 C 1.39550 * 119.04762 * 0.21848 * 9 8 7 11 11 N 1.31299 * 120.84160 * 359.58306 * 10 9 8 12 12 O 1.35527 * 121.72671 * 180.29476 * 9 8 7 13 13 C 1.42883 * 117.73033 * 342.55480 * 12 9 8 14 14 C 1.53398 * 108.50604 * 49.36896 * 13 12 9 15 15 C 1.50486 * 119.63207 * 179.59624 * 8 7 6 16 16 C 1.55411 * 110.85132 * 123.29518 * 2 1 3 17 17 C 1.54907 * 101.66291 * 153.70342 * 16 2 1 18 18 N 1.47420 * 104.83467 * 323.07233 * 17 16 2 19 19 C 1.36935 * 125.65191 * 204.09132 * 18 17 16 20 20 H 1.07998 * 120.00239 * 169.98119 * 19 18 17 21 21 C 1.38810 * 119.99952 * 349.99110 * 19 18 17 22 22 N 1.31625 * 120.00077 * 350.41594 * 21 19 18 23 23 Si 1.86803 * 120.00274 * 170.41859 * 21 19 18 24 24 H 1.48495 * 109.47346 * 94.13589 * 23 21 19 25 25 H 1.48496 * 109.47417 * 214.13970 * 23 21 19 26 26 H 1.48498 * 109.46994 * 334.13857 * 23 21 19 27 27 C 1.47028 * 108.70124 * 24.13395 * 18 17 16 28 28 H 1.08996 * 109.47164 * 181.78611 * 1 2 3 29 29 H 1.08996 * 109.47567 * 301.79053 * 1 2 3 30 30 H 1.09004 * 109.46996 * 61.79004 * 1 2 3 31 31 H 0.96997 * 120.00496 * 118.20585 * 3 2 1 32 32 H 1.08003 * 120.46419 * 359.97438 * 7 6 4 33 33 H 1.07995 * 119.57926 * 179.86429 * 10 9 8 34 34 H 1.08999 * 109.63116 * 169.07074 * 13 12 9 35 35 H 1.09003 * 109.62872 * 289.66552 * 13 12 9 36 36 H 1.09002 * 109.68882 * 55.03927 * 14 13 12 37 37 H 1.08999 * 109.68839 * 175.61007 * 14 13 12 38 38 H 1.08999 * 109.45869 * 282.69454 * 15 8 7 39 39 H 1.08998 * 109.45639 * 42.64334 * 15 8 7 40 40 H 1.08993 * 110.89037 * 35.63327 * 16 2 1 41 41 H 1.09003 * 111.06706 * 271.84979 * 16 2 1 42 42 H 1.09000 * 110.36383 * 204.23662 * 17 16 2 43 43 H 1.09003 * 110.37097 * 81.91698 * 17 16 2 44 44 H 0.96996 * 119.99640 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.88146 * 118.35785 * 27 18 17 46 46 H 1.09002 * 109.87992 * 239.36953 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7729 2.1954 -1.0286 5 8 1.0924 1.8036 -1.9564 6 6 2.2982 3.5783 -1.0290 7 6 2.0085 4.4276 -2.0967 8 6 2.5073 5.7186 -2.0835 9 6 3.2774 6.1246 -1.0038 10 6 3.5273 5.2195 0.0286 11 7 3.0372 4.0020 -0.0102 12 8 3.7912 7.3762 -0.9254 13 6 3.8514 8.1467 -2.1271 14 6 2.4794 8.0902 -2.8109 15 6 2.2101 6.6428 -3.2334 16 6 2.0831 -0.7973 1.2139 17 6 3.4656 -1.2539 0.6849 18 7 3.2438 -1.5535 -0.7414 19 6 4.0006 -2.4006 -1.5061 20 1 3.6663 -2.6802 -2.4942 21 6 5.1974 -2.9002 -1.0111 22 7 5.6994 -2.4189 0.1065 23 14 6.0956 -4.2553 -1.9310 24 1 7.1090 -3.6531 -2.8340 25 1 6.7700 -5.1514 -0.9577 26 1 5.1217 -5.0389 -2.7327 27 6 2.0760 -0.7912 -1.2071 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3634 0.5414 0.8734 30 1 -0.3633 0.4858 -0.9056 31 1 2.5930 1.6823 0.7402 32 1 1.4042 4.0825 -2.9226 33 1 4.1278 5.5258 0.8724 34 1 4.0985 9.1808 -1.8871 35 1 4.6089 7.7307 -2.7913 36 1 1.7081 8.4189 -2.1143 37 1 2.4802 8.7351 -3.6897 38 1 2.8483 6.3869 -4.0792 39 1 1.1646 6.5377 -3.5228 40 1 1.4480 -1.6542 1.4381 41 1 2.1919 -0.1549 2.0878 42 1 3.7975 -2.1478 1.2131 43 1 4.1973 -0.4536 0.7952 44 1 6.5359 -2.7678 0.4521 45 1 2.3742 -0.1025 -1.9977 46 1 1.3120 -1.4740 -1.5791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046806721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:05 Heat of formation + Delta-G solvation = -35.975766 kcal Electronic energy + Delta-G solvation = -28624.418515 eV Core-core repulsion = 24706.860806 eV Total energy + Delta-G solvation = -3917.557709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29071 -41.20938 -39.58803 -38.57942 -35.85241 -35.59383 -33.77833 -32.71713 -32.15994 -31.25642 -30.34775 -27.57332 -27.15851 -26.17626 -25.31255 -24.39694 -23.12875 -22.27543 -21.08856 -20.39771 -19.21247 -18.87339 -18.77360 -17.96129 -17.05994 -16.76735 -16.70280 -16.38260 -16.07026 -15.67762 -15.62592 -15.34709 -15.07177 -14.94423 -14.61728 -14.39754 -14.25329 -14.04852 -13.82890 -13.61610 -13.35310 -13.28829 -13.08045 -12.91024 -12.72711 -12.49348 -12.17482 -12.03475 -11.95271 -11.90331 -11.75725 -11.73505 -11.63017 -11.10090 -10.69917 -10.61900 -10.59654 -10.07238 -9.51125 -8.86413 -7.89575 -5.23766 -0.41290 0.04698 1.43653 1.45295 1.55556 1.65459 2.02288 2.18546 2.48083 2.74768 3.12623 3.29017 3.40367 3.45516 3.61015 3.63980 3.69368 3.87056 3.94208 3.99944 4.05558 4.15625 4.25399 4.48633 4.52779 4.61104 4.63251 4.66377 4.68918 4.80212 4.84502 4.88276 4.91381 4.93763 5.01131 5.02566 5.08548 5.14565 5.24096 5.32770 5.41510 5.57666 5.63648 5.72217 6.12859 6.19089 6.45311 6.74941 7.07316 7.19173 7.74251 8.41360 9.22200 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.002939 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.271903 B = 9526.374587 C =10224.569339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.166 3.834 3 N -0.687 5.687 4 C 0.571 3.429 5 O -0.562 6.562 6 C 0.020 3.980 7 C -0.077 4.077 8 C -0.130 4.130 9 C 0.107 3.893 10 C 0.073 3.927 11 N -0.441 5.441 12 O -0.311 6.311 13 C 0.046 3.954 14 C -0.153 4.153 15 C -0.084 4.084 16 C -0.128 4.128 17 C 0.180 3.820 18 N -0.622 5.622 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.979 3.021 24 H -0.288 1.288 25 H -0.287 1.287 26 H -0.270 1.270 27 C 0.136 3.864 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.412 0.588 32 H 0.151 0.849 33 H 0.191 0.809 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.040 0.960 43 H -0.003 1.003 44 H 0.249 0.751 45 H 0.006 0.994 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 24.590 -1.376 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 N -0.337 5.337 4 C 0.357 3.643 5 O -0.441 6.441 6 C -0.116 4.116 7 C -0.098 4.098 8 C -0.138 4.138 9 C 0.058 3.942 10 C -0.091 4.091 11 N -0.153 5.153 12 O -0.223 6.223 13 C -0.028 4.028 14 C -0.191 4.191 15 C -0.120 4.120 16 C -0.167 4.167 17 C 0.055 3.945 18 N -0.348 5.348 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.254 4.254 22 N -0.592 5.592 23 Si 0.806 3.194 24 H -0.215 1.215 25 H -0.213 1.213 26 H -0.195 1.195 27 C 0.010 3.990 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.249 0.751 32 H 0.169 0.831 33 H 0.208 0.792 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.015 0.985 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.408 23.681 -1.194 25.157 hybrid contribution 0.984 -0.326 -1.051 1.476 sum -7.424 23.355 -2.245 24.609 Atomic orbital electron populations 1.21946 0.91563 1.03233 1.02930 1.21328 0.94681 0.80351 0.95654 1.45795 1.52847 1.11795 1.23275 1.18036 0.79661 0.84520 0.82054 1.90711 1.40635 1.76699 1.36104 1.20916 1.01660 0.94996 0.94052 1.21948 0.97606 0.92321 0.97957 1.20431 0.98966 0.95771 0.98616 1.20040 0.92773 0.86260 0.95105 1.22799 1.00098 0.86646 0.99525 1.67470 1.07080 1.16312 1.24478 1.85972 1.77179 1.22240 1.36893 1.23490 0.97963 0.96898 0.84467 1.22273 0.97330 0.96150 1.03306 1.20658 1.04432 0.92913 0.94045 1.23264 0.97321 0.99973 0.96123 1.21204 0.92355 0.97091 0.83830 1.44790 1.31713 1.50510 1.07822 1.19348 1.00586 1.19027 0.98745 0.91152 1.25643 0.97621 1.02891 0.99268 1.70148 1.20678 1.44828 1.23590 0.85078 0.78196 0.78731 0.77375 1.21517 1.21311 1.19528 1.21683 0.89383 0.92641 0.95313 0.90470 0.90477 0.92295 0.75111 0.83105 0.79187 0.84216 0.90831 0.90412 0.86319 0.88534 0.88099 0.88885 0.88319 0.94197 0.98468 0.94156 0.97608 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.42 71.98 0.61 -3.68 16 2 C 0.17 6.23 0.81 4.88 0.00 6.24 16 3 N -0.69 -24.93 5.14 -419.93 -2.16 -27.09 16 4 C 0.57 21.26 7.03 86.81 0.61 21.87 16 5 O -0.56 -23.23 13.28 -3.85 -0.05 -23.28 16 6 C 0.02 0.63 6.75 41.86 0.28 0.91 16 7 C -0.08 -2.05 9.30 22.61 0.21 -1.84 16 8 C -0.13 -2.67 5.75 -19.78 -0.11 -2.78 16 9 C 0.11 2.27 6.50 22.70 0.15 2.41 16 10 C 0.07 1.73 11.12 85.09 0.95 2.67 16 11 N -0.44 -13.09 9.52 -184.32 -1.76 -14.85 16 12 O -0.31 -5.25 10.29 -88.31 -0.91 -6.16 16 13 C 0.05 0.42 7.01 72.12 0.51 0.92 16 14 C -0.15 -1.15 6.20 30.78 0.19 -0.96 16 15 C -0.08 -1.02 5.90 29.84 0.18 -0.85 16 16 C -0.13 -4.70 6.10 32.08 0.20 -4.51 16 17 C 0.18 9.08 5.41 86.86 0.47 9.55 16 18 N -0.62 -34.41 3.39 -692.00 -2.35 -36.76 16 19 C -0.25 -14.90 10.24 84.03 0.86 -14.04 16 20 H 0.07 4.15 7.85 -2.91 -0.02 4.13 16 21 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 22 N -0.94 -58.13 10.68 21.65 0.23 -57.90 16 23 Si 0.98 47.50 29.56 68.60 2.03 49.52 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.14 6.49 6.12 86.73 0.53 7.02 16 28 H 0.08 2.20 8.13 -2.39 -0.02 2.18 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.06 2.00 6.46 -2.38 -0.02 1.98 16 31 H 0.41 14.07 7.79 -92.71 -0.72 13.35 16 32 H 0.15 3.86 7.64 -2.91 -0.02 3.84 16 33 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 3.15 8.04 -2.39 -0.02 3.13 16 41 H 0.10 2.99 8.04 -2.39 -0.02 2.97 16 42 H 0.04 2.22 6.94 -2.39 -0.02 2.21 16 43 H 0.00 -0.15 8.07 -2.39 -0.02 -0.17 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.01 0.31 6.47 -2.39 -0.02 0.30 16 46 H 0.03 1.42 7.82 -2.39 -0.02 1.41 16 Total: -1.00 -77.24 367.86 1.40 -75.84 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.28 Total: 20.86 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.08 Total: 19.81 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -6.03 Total: -136.59 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.96 Total: -29.44 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -77.24 1.40 -75.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046806721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.864 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds