Wall clock time and date at job start Tue Mar 31 2020 17:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 110.88536 * 2 1 4 4 C 1.34777 * 120.00094 * 62.42672 * 3 2 1 5 5 O 1.21591 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.47521 * 119.99807 * 179.72319 * 4 3 2 7 7 C 1.39911 * 120.69926 * 359.97438 * 6 4 3 8 8 C 1.38437 * 118.54617 * 179.78337 * 7 6 4 9 9 C 1.38396 * 119.62937 * 0.50737 * 8 7 6 10 10 N 1.32362 * 120.59997 * 359.73222 * 9 8 7 11 11 C 1.32033 * 122.19067 * 0.02562 * 10 9 8 12 12 O 1.35427 * 119.78902 * 179.97438 * 11 10 9 13 13 C 1.51553 * 109.52915 * 179.72686 * 9 8 7 14 14 C 1.54321 * 105.22589 * 17.25820 * 13 9 8 15 15 C 1.51288 * 130.45851 * 180.21948 * 8 7 6 16 16 C 1.55156 * 111.03389 * 236.09753 * 2 1 3 17 17 C 1.54328 * 102.93917 * 206.40698 * 16 2 1 18 18 N 1.47016 * 107.27133 * 22.19453 * 17 16 2 19 19 C 1.36936 * 125.64922 * 181.02334 * 18 17 16 20 20 H 1.08004 * 119.99914 * 173.94223 * 19 18 17 21 21 C 1.38810 * 120.00031 * 353.94100 * 19 18 17 22 22 N 1.31625 * 120.00170 * 6.83067 * 21 19 18 23 23 Si 1.86797 * 120.00118 * 186.83051 * 21 19 18 24 24 H 1.48507 * 109.47231 * 94.98536 * 23 21 19 25 25 H 1.48503 * 109.47342 * 214.98412 * 23 21 19 26 26 H 1.48495 * 109.47329 * 334.98703 * 23 21 19 27 27 C 1.47426 * 108.70438 * 1.05933 * 18 17 16 28 28 H 1.09003 * 109.47478 * 60.69938 * 1 2 3 29 29 H 1.08998 * 109.47034 * 180.70254 * 1 2 3 30 30 H 1.08994 * 109.46774 * 300.70039 * 1 2 3 31 31 H 0.97003 * 120.00002 * 242.42803 * 3 2 1 32 32 H 1.08007 * 120.72107 * 0.02844 * 7 6 4 33 33 H 0.96698 * 113.99289 * 270.01943 * 12 11 10 34 34 H 1.08999 * 110.29462 * 136.19594 * 13 9 8 35 35 H 1.09002 * 110.29037 * 258.22497 * 13 9 8 36 36 H 1.08997 * 110.81335 * 91.79061 * 14 13 9 37 37 H 1.09004 * 110.81455 * 215.32887 * 14 13 9 38 38 H 1.08996 * 110.31054 * 44.16441 * 15 8 7 39 39 H 1.09005 * 110.38939 * 282.03744 * 15 8 7 40 40 H 1.08999 * 110.72294 * 324.77160 * 16 2 1 41 41 H 1.09009 * 110.72053 * 88.04762 * 16 2 1 42 42 H 1.08998 * 109.88229 * 262.77577 * 17 16 2 43 43 H 1.09006 * 109.88111 * 141.60998 * 17 16 2 44 44 H 0.96999 * 120.00238 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.36898 * 217.03618 * 27 18 17 46 46 H 1.08998 * 110.46472 * 94.75793 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1160 1.7966 1.9682 6 6 2.3188 3.5673 1.0374 7 6 3.0991 4.0340 -0.0260 8 6 3.5706 5.3348 0.0205 9 6 3.2718 6.1323 1.1113 10 7 2.5354 5.6642 2.1066 11 6 2.0573 4.4335 2.1095 12 8 1.3094 4.0047 3.1539 13 6 3.9032 7.4979 0.9287 14 6 4.2426 7.5898 -0.5740 15 6 4.4189 6.1073 -0.9656 16 6 2.0869 -0.8078 -1.2020 17 6 3.4683 -1.2732 -0.6952 18 7 3.4275 -1.2420 0.7740 19 6 4.4643 -1.5649 1.6083 20 1 4.3665 -1.4167 2.6736 21 6 5.6409 -2.0829 1.0847 22 7 5.8128 -2.1385 -0.2191 23 14 6.9805 -2.7009 2.2305 24 1 6.8347 -4.1670 2.4173 25 1 8.3112 -2.4072 1.6402 26 1 6.8608 -2.0202 3.5448 27 6 2.0853 -0.8062 1.2006 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.5885 1.6833 -0.7447 32 1 3.3251 3.3947 -0.8667 33 1 1.8233 3.5974 3.8646 34 1 3.1972 8.2809 1.2053 35 1 4.8100 7.5783 1.5281 36 1 3.4212 8.0422 -1.1296 37 1 5.1683 8.1441 -0.7288 38 1 4.0640 5.9398 -1.9825 39 1 5.4652 5.8146 -0.8777 40 1 1.4481 -1.6634 -1.4208 41 1 2.1929 -0.1698 -2.0795 42 1 4.2432 -0.5984 -1.0590 43 1 3.6666 -2.2884 -1.0391 44 1 6.6348 -2.5007 -0.5849 45 1 2.1553 -0.1714 2.0838 46 1 1.4512 -1.6691 1.4038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046831895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:10 Heat of formation + Delta-G solvation = -10.266475 kcal Electronic energy + Delta-G solvation = -29164.562968 eV Core-core repulsion = 25248.120097 eV Total energy + Delta-G solvation = -3916.442870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16992 -39.63643 -38.06187 -36.99355 -35.33472 -33.99114 -33.17550 -31.63997 -30.06927 -28.99604 -28.60999 -27.96830 -25.67583 -24.09899 -23.70211 -22.93607 -21.27945 -20.71028 -20.11215 -19.02257 -18.54717 -17.50759 -17.03413 -16.61342 -16.06272 -15.66223 -15.40001 -14.69707 -14.55160 -14.37150 -14.20222 -13.71631 -13.45742 -13.26193 -13.06142 -13.01337 -12.78250 -12.72624 -12.20422 -12.06841 -11.91968 -11.79272 -11.65682 -11.59378 -11.53452 -11.18566 -10.93905 -10.88013 -10.42508 -10.38432 -10.08773 -10.03041 -9.90242 -9.71988 -9.65725 -9.14832 -8.74068 -8.61677 -8.51349 -6.79819 -5.73157 -3.03692 0.52564 0.98999 2.95444 3.19107 3.39479 3.45535 3.46702 3.50469 3.72166 4.10796 4.19805 4.50222 4.57751 4.58947 4.67297 4.89899 4.93049 5.12565 5.24663 5.37047 5.38944 5.39918 5.45225 5.45686 5.58215 5.60669 5.63546 5.71659 5.72386 5.83504 5.93233 6.01823 6.12244 6.15708 6.27899 6.35119 6.38644 6.53739 6.67953 6.83011 7.12333 7.50305 7.50938 7.58010 7.75762 7.79086 7.87535 8.25312 8.54439 9.22573 9.82926 10.49588 11.39378 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.003814 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.934339 B = 7340.534624 C = 8214.648480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 N -0.697 5.697 4 C 0.567 3.433 5 O -0.518 6.518 6 C -0.194 4.194 7 C -0.016 4.016 8 C -0.170 4.170 9 C 0.161 3.839 10 N -0.507 5.507 11 C 0.373 3.627 12 O -0.459 6.459 13 C -0.073 4.073 14 C -0.118 4.118 15 C -0.077 4.077 16 C -0.146 4.146 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.132 3.868 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.141 0.859 33 H 0.406 0.594 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.055 0.945 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 17.488 -4.574 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 N -0.347 5.347 4 C 0.352 3.648 5 O -0.395 6.395 6 C -0.201 4.201 7 C -0.042 4.042 8 C -0.172 4.172 9 C 0.022 3.978 10 N -0.226 5.226 11 C 0.193 3.807 12 O -0.266 6.266 13 C -0.111 4.111 14 C -0.156 4.156 15 C -0.114 4.114 16 C -0.185 4.185 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.005 3.995 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.159 0.841 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.983 17.767 -3.481 19.068 hybrid contribution 1.609 -1.078 -0.175 1.944 sum -4.374 16.689 -3.656 17.636 Atomic orbital electron populations 1.21992 0.94263 1.02205 1.02343 1.21513 0.92606 0.80425 0.98391 1.45700 1.54068 1.12781 1.22195 1.17604 0.80503 0.83815 0.82868 1.90762 1.38483 1.75789 1.34450 1.21135 1.04230 0.96401 0.98351 1.21192 0.92001 0.94202 0.96835 1.21356 1.01933 0.94844 0.99072 1.21805 0.91057 0.96757 0.88136 1.66344 1.11312 1.15428 1.29489 1.18853 0.87374 0.86254 0.88265 1.84697 1.33049 1.78708 1.30189 1.21095 1.00701 0.91836 0.97451 1.22322 1.02639 0.96164 0.94474 1.20957 0.99273 0.93474 0.97712 1.23233 1.00545 0.98923 0.95810 1.21156 0.89857 0.99945 0.83792 1.44437 1.07578 1.79161 1.01737 1.19064 0.91935 1.34591 0.89471 0.90621 1.24769 0.98128 1.01501 0.95983 1.69959 1.26370 1.51292 1.09432 0.86150 0.81276 0.78955 0.79750 1.21618 1.21851 1.20716 1.21883 0.87508 0.94919 0.95186 0.93164 0.91753 0.90922 0.77080 0.84104 0.73449 0.89421 0.88801 0.90499 0.89687 0.90060 0.89500 0.90733 0.91838 0.94119 0.93512 0.93884 0.92652 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.62 37.16 0.32 -1.99 16 2 C 0.16 2.77 0.82 -129.67 -0.11 2.67 16 3 N -0.70 -11.45 5.13 -46.65 -0.24 -11.69 16 4 C 0.57 9.86 7.16 -12.48 -0.09 9.77 16 5 O -0.52 -10.25 11.97 -16.44 -0.20 -10.44 16 6 C -0.19 -2.98 5.90 -104.72 -0.62 -3.60 16 7 C -0.02 -0.21 9.64 -38.88 -0.37 -0.58 16 8 C -0.17 -1.90 6.14 -104.20 -0.64 -2.54 16 9 C 0.16 1.95 7.32 -81.89 -0.60 1.35 16 10 N -0.51 -7.50 10.36 -8.88 -0.09 -7.59 16 11 C 0.37 5.86 7.77 -16.69 -0.13 5.73 16 12 O -0.46 -7.14 11.67 -39.70 -0.46 -7.61 16 13 C -0.07 -0.58 6.77 -26.77 -0.18 -0.77 16 14 C -0.12 -0.71 7.08 -25.34 -0.18 -0.89 16 15 C -0.08 -0.58 6.77 -26.89 -0.18 -0.76 16 16 C -0.15 -2.56 5.99 -24.89 -0.15 -2.70 16 17 C 0.18 4.13 5.37 -3.06 -0.02 4.11 16 18 N -0.60 -15.34 3.39 -170.07 -0.58 -15.91 16 19 C -0.22 -6.26 10.26 -15.06 -0.15 -6.41 16 20 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 21 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 22 N -0.92 -26.66 10.36 55.49 0.58 -26.08 16 23 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.13 2.88 6.11 -2.53 -0.02 2.87 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.07 1.23 6.45 -51.93 -0.34 0.90 16 31 H 0.39 5.65 6.60 -40.82 -0.27 5.38 16 32 H 0.14 1.48 6.52 -52.48 -0.34 1.14 16 33 H 0.41 4.88 9.06 45.56 0.41 5.30 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 41 H 0.06 0.94 8.05 -51.92 -0.42 0.53 16 42 H 0.04 1.03 7.55 -51.93 -0.39 0.64 16 43 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.30 6.31 -51.93 -0.33 0.98 16 46 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -34.45 366.20 -9.53 -43.98 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.82 Total: 6.67 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -3.21 Total: 5.92 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.33 Total: -61.27 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.66 Total: -18.05 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.45 -9.53 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046831895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds