Wall clock time and date at job start Tue Mar 31 2020 17:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 110.88536 * 2 1 4 4 C 1.34777 * 120.00094 * 62.42672 * 3 2 1 5 5 O 1.21591 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.47521 * 119.99807 * 179.72319 * 4 3 2 7 7 C 1.39911 * 120.69926 * 359.97438 * 6 4 3 8 8 C 1.38437 * 118.54617 * 179.78337 * 7 6 4 9 9 C 1.38396 * 119.62937 * 0.50737 * 8 7 6 10 10 N 1.32362 * 120.59997 * 359.73222 * 9 8 7 11 11 C 1.32033 * 122.19067 * 0.02562 * 10 9 8 12 12 O 1.35427 * 119.78902 * 179.97438 * 11 10 9 13 13 C 1.51553 * 109.52915 * 179.72686 * 9 8 7 14 14 C 1.54321 * 105.22589 * 17.25820 * 13 9 8 15 15 C 1.51288 * 130.45851 * 180.21948 * 8 7 6 16 16 C 1.55156 * 111.03389 * 236.09753 * 2 1 3 17 17 C 1.54328 * 102.93917 * 206.40698 * 16 2 1 18 18 N 1.47016 * 107.27133 * 22.19453 * 17 16 2 19 19 C 1.36936 * 125.64922 * 181.02334 * 18 17 16 20 20 H 1.08004 * 119.99914 * 173.94223 * 19 18 17 21 21 C 1.38810 * 120.00031 * 353.94100 * 19 18 17 22 22 N 1.31625 * 120.00170 * 6.83067 * 21 19 18 23 23 Si 1.86797 * 120.00118 * 186.83051 * 21 19 18 24 24 H 1.48507 * 109.47231 * 94.98536 * 23 21 19 25 25 H 1.48503 * 109.47342 * 214.98412 * 23 21 19 26 26 H 1.48495 * 109.47329 * 334.98703 * 23 21 19 27 27 C 1.47426 * 108.70438 * 1.05933 * 18 17 16 28 28 H 1.09003 * 109.47478 * 60.69938 * 1 2 3 29 29 H 1.08998 * 109.47034 * 180.70254 * 1 2 3 30 30 H 1.08994 * 109.46774 * 300.70039 * 1 2 3 31 31 H 0.97003 * 120.00002 * 242.42803 * 3 2 1 32 32 H 1.08007 * 120.72107 * 0.02844 * 7 6 4 33 33 H 0.96698 * 113.99289 * 270.01943 * 12 11 10 34 34 H 1.08999 * 110.29462 * 136.19594 * 13 9 8 35 35 H 1.09002 * 110.29037 * 258.22497 * 13 9 8 36 36 H 1.08997 * 110.81335 * 91.79061 * 14 13 9 37 37 H 1.09004 * 110.81455 * 215.32887 * 14 13 9 38 38 H 1.08996 * 110.31054 * 44.16441 * 15 8 7 39 39 H 1.09005 * 110.38939 * 282.03744 * 15 8 7 40 40 H 1.08999 * 110.72294 * 324.77160 * 16 2 1 41 41 H 1.09009 * 110.72053 * 88.04762 * 16 2 1 42 42 H 1.08998 * 109.88229 * 262.77577 * 17 16 2 43 43 H 1.09006 * 109.88111 * 141.60998 * 17 16 2 44 44 H 0.96999 * 120.00238 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.36898 * 217.03618 * 27 18 17 46 46 H 1.08998 * 110.46472 * 94.75793 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1160 1.7966 1.9682 6 6 2.3188 3.5673 1.0374 7 6 3.0991 4.0340 -0.0260 8 6 3.5706 5.3348 0.0205 9 6 3.2718 6.1323 1.1113 10 7 2.5354 5.6642 2.1066 11 6 2.0573 4.4335 2.1095 12 8 1.3094 4.0047 3.1539 13 6 3.9032 7.4979 0.9287 14 6 4.2426 7.5898 -0.5740 15 6 4.4189 6.1073 -0.9656 16 6 2.0869 -0.8078 -1.2020 17 6 3.4683 -1.2732 -0.6952 18 7 3.4275 -1.2420 0.7740 19 6 4.4643 -1.5649 1.6083 20 1 4.3665 -1.4167 2.6736 21 6 5.6409 -2.0829 1.0847 22 7 5.8128 -2.1385 -0.2191 23 14 6.9805 -2.7009 2.2305 24 1 6.8347 -4.1670 2.4173 25 1 8.3112 -2.4072 1.6402 26 1 6.8608 -2.0202 3.5448 27 6 2.0853 -0.8062 1.2006 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 2.5885 1.6833 -0.7447 32 1 3.3251 3.3947 -0.8667 33 1 1.8233 3.5974 3.8646 34 1 3.1972 8.2809 1.2053 35 1 4.8100 7.5783 1.5281 36 1 3.4212 8.0422 -1.1296 37 1 5.1683 8.1441 -0.7288 38 1 4.0640 5.9398 -1.9825 39 1 5.4652 5.8146 -0.8777 40 1 1.4481 -1.6634 -1.4208 41 1 2.1929 -0.1698 -2.0795 42 1 4.2432 -0.5984 -1.0590 43 1 3.6666 -2.2884 -1.0391 44 1 6.6348 -2.5007 -0.5849 45 1 2.1553 -0.1714 2.0838 46 1 1.4512 -1.6691 1.4038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046831895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:09 Heat of formation + Delta-G solvation = -35.683639 kcal Electronic energy + Delta-G solvation = -29165.665139 eV Core-core repulsion = 25248.120097 eV Total energy + Delta-G solvation = -3917.545041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21238 -40.96381 -39.21158 -38.45163 -36.22985 -35.67696 -34.42926 -33.26473 -31.64539 -30.42027 -29.80487 -28.70596 -27.52715 -25.55685 -24.87124 -24.13412 -22.36126 -22.00555 -21.46149 -20.46817 -19.66225 -19.07563 -18.24820 -18.09026 -16.99575 -16.92358 -16.60477 -16.51177 -15.98990 -15.70641 -15.49915 -15.11858 -15.00820 -14.19959 -14.16379 -13.97655 -13.88973 -13.80495 -13.56070 -13.51784 -13.40325 -13.07883 -12.93163 -12.85771 -12.75270 -12.67845 -12.15645 -12.08080 -12.05068 -11.98229 -11.74895 -11.71296 -11.56118 -10.94445 -10.93882 -10.70283 -10.35444 -10.03865 -9.62914 -8.86053 -7.88456 -5.20597 -0.53205 -0.00546 1.42174 1.44007 1.52320 1.78112 2.03905 2.37151 2.46729 2.62840 3.24805 3.30277 3.36707 3.50839 3.66621 3.74320 3.81835 3.97513 4.04359 4.12128 4.17997 4.21573 4.33724 4.59830 4.63309 4.68678 4.76506 4.80495 4.82832 4.85956 4.88895 4.92671 4.95134 5.03710 5.07182 5.09853 5.22372 5.35162 5.36118 5.40442 5.41979 5.62324 5.68818 5.75805 6.19074 6.44186 6.56413 6.75747 7.10718 7.23201 7.76370 8.41317 9.21891 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.003814 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.934339 B = 7340.534624 C = 8214.648480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.692 5.692 4 C 0.564 3.436 5 O -0.550 6.550 6 C -0.216 4.216 7 C -0.019 4.019 8 C -0.167 4.167 9 C 0.150 3.850 10 N -0.528 5.528 11 C 0.353 3.647 12 O -0.475 6.475 13 C -0.074 4.074 14 C -0.108 4.108 15 C -0.076 4.076 16 C -0.128 4.128 17 C 0.185 3.815 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.066 0.934 21 C -0.054 4.054 22 N -0.942 5.942 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.276 1.276 27 C 0.129 3.871 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.405 0.595 32 H 0.161 0.839 33 H 0.413 0.587 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.248 0.752 45 H 0.031 0.969 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 19.287 -6.515 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 N -0.344 5.344 4 C 0.351 3.649 5 O -0.429 6.429 6 C -0.223 4.223 7 C -0.044 4.044 8 C -0.169 4.169 9 C 0.012 3.988 10 N -0.248 5.248 11 C 0.173 3.827 12 O -0.284 6.284 13 C -0.111 4.111 14 C -0.145 4.145 15 C -0.114 4.114 16 C -0.166 4.166 17 C 0.060 3.940 18 N -0.346 5.346 19 C -0.373 4.373 20 H 0.084 0.916 21 C -0.248 4.248 22 N -0.590 5.590 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.201 1.201 27 C 0.003 3.997 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.274 0.726 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.504 19.582 -5.437 21.055 hybrid contribution 1.501 -1.574 0.465 2.224 sum -4.003 18.008 -4.971 19.105 Atomic orbital electron populations 1.21915 0.92007 1.03161 1.02764 1.21387 0.94053 0.80483 0.96062 1.45636 1.54122 1.12143 1.22480 1.17943 0.79945 0.84621 0.82418 1.90737 1.39983 1.76621 1.35570 1.21010 1.06124 0.95413 0.99749 1.21437 0.91208 0.95269 0.96500 1.21854 1.01198 0.94171 0.99630 1.22701 0.89838 0.98774 0.87522 1.66392 1.12380 1.15058 1.30955 1.19028 0.88255 0.86975 0.88464 1.84646 1.34031 1.78978 1.30758 1.21317 1.00918 0.89476 0.99424 1.22372 1.04329 0.95303 0.92524 1.21125 0.98933 0.93820 0.97486 1.23114 0.96888 1.00033 0.96555 1.20959 0.92810 0.97556 0.82664 1.44672 1.08217 1.79119 1.02638 1.19291 0.93225 1.35042 0.89700 0.91603 1.25485 1.00079 1.01776 0.97465 1.70140 1.26640 1.51624 1.10633 0.85196 0.78583 0.78205 0.78170 1.21363 1.21538 1.20147 1.21974 0.86300 0.95042 0.96421 0.90483 0.90488 0.92771 0.75775 0.82181 0.72571 0.88694 0.87597 0.89566 0.87057 0.88305 0.88526 0.88875 0.88236 0.96622 0.96959 0.94236 0.95048 0.95745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.62 71.98 0.62 -3.45 16 2 C 0.17 5.74 0.82 4.99 0.00 5.74 16 3 N -0.69 -22.32 5.13 -419.77 -2.15 -24.48 16 4 C 0.56 19.99 7.16 86.69 0.62 20.61 16 5 O -0.55 -22.64 11.97 16.77 0.20 -22.44 16 6 C -0.22 -6.73 5.90 -19.93 -0.12 -6.85 16 7 C -0.02 -0.45 9.64 22.72 0.22 -0.23 16 8 C -0.17 -3.41 6.14 -19.59 -0.12 -3.53 16 9 C 0.15 3.43 7.32 42.79 0.31 3.75 16 10 N -0.53 -15.75 10.36 -295.11 -3.06 -18.81 16 11 C 0.35 11.46 7.77 85.16 0.66 12.12 16 12 O -0.48 -15.74 11.67 -66.46 -0.78 -16.52 16 13 C -0.07 -0.98 6.77 30.57 0.21 -0.77 16 14 C -0.11 -0.85 7.08 31.50 0.22 -0.63 16 15 C -0.08 -0.88 6.77 30.49 0.21 -0.68 16 16 C -0.13 -4.20 5.99 31.78 0.19 -4.01 16 17 C 0.18 8.67 5.37 86.73 0.47 9.14 16 18 N -0.62 -32.31 3.39 -691.99 -2.35 -34.66 16 19 C -0.24 -14.10 10.26 84.03 0.86 -13.24 16 20 H 0.07 3.83 7.84 -2.91 -0.02 3.80 16 21 C -0.05 -3.10 5.48 84.86 0.47 -2.64 16 22 N -0.94 -55.34 10.36 21.65 0.22 -55.12 16 23 Si 0.97 46.34 29.56 68.60 2.03 48.37 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 C 0.13 5.75 6.11 86.85 0.53 6.28 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 30 H 0.05 1.81 6.45 -2.39 -0.02 1.79 16 31 H 0.41 11.03 6.60 -92.71 -0.61 10.42 16 32 H 0.16 3.07 6.52 -2.91 -0.02 3.06 16 33 H 0.41 11.03 9.06 -74.06 -0.67 10.36 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 41 H 0.10 2.60 8.05 -2.38 -0.02 2.59 16 42 H 0.02 0.80 7.55 -2.39 -0.02 0.78 16 43 H 0.01 0.65 7.37 -2.38 -0.02 0.63 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.03 1.54 6.31 -2.39 -0.02 1.53 16 46 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 Total: -1.00 -78.05 366.20 -0.78 -78.84 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.25 Total: 23.21 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.35 Total: 21.61 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -7.33 Total: -133.06 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.57 Total: -38.96 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -78.05 -0.78 -78.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046831895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.152 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds