Wall clock time and date at job start Tue Mar 31 2020 17:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 110.64119 * 2 1 4 4 C 1.34774 * 120.00056 * 298.30994 * 3 2 1 5 5 O 1.21585 * 119.99847 * 0.02562 * 4 3 2 6 6 C 1.47531 * 119.99819 * 179.97438 * 4 3 2 7 7 C 1.39908 * 120.69304 * 359.95977 * 6 4 3 8 8 C 1.38450 * 118.54218 * 179.97438 * 7 6 4 9 9 C 1.38397 * 119.62595 * 0.08008 * 8 7 6 10 10 N 1.32360 * 120.60320 * 359.95163 * 9 8 7 11 11 C 1.32038 * 122.18756 * 0.02562 * 10 9 8 12 12 O 1.35429 * 119.78243 * 179.97438 * 11 10 9 13 13 C 1.51547 * 109.52623 * 179.97438 * 9 8 7 14 14 C 1.54572 * 105.24634 * 17.26435 * 13 9 8 15 15 C 1.51279 * 130.45990 * 180.02562 * 8 7 6 16 16 C 1.55160 * 110.87043 * 123.24697 * 2 1 3 17 17 C 1.54913 * 101.58126 * 153.93534 * 16 2 1 18 18 N 1.47420 * 104.83447 * 322.99335 * 17 16 2 19 19 C 1.36938 * 125.65255 * 204.09441 * 18 17 16 20 20 H 1.07993 * 120.00167 * 169.98124 * 19 18 17 21 21 C 1.38817 * 119.99213 * 349.98038 * 19 18 17 22 22 N 1.31613 * 120.00398 * 350.42430 * 21 19 18 23 23 Si 1.86803 * 119.99577 * 170.42342 * 21 19 18 24 24 H 1.48498 * 109.47242 * 94.14050 * 23 21 19 25 25 H 1.48496 * 109.46811 * 214.14199 * 23 21 19 26 26 H 1.48507 * 109.46951 * 334.13918 * 23 21 19 27 27 C 1.47023 * 108.70279 * 24.12585 * 18 17 16 28 28 H 1.09002 * 109.47206 * 59.30029 * 1 2 3 29 29 H 1.09004 * 109.47303 * 179.29365 * 1 2 3 30 30 H 1.08995 * 109.47891 * 299.29916 * 1 2 3 31 31 H 0.97003 * 120.00179 * 118.30640 * 3 2 1 32 32 H 1.07996 * 120.72798 * 0.02562 * 7 6 4 33 33 H 0.96706 * 113.99962 * 90.00773 * 12 11 10 34 34 H 1.08998 * 110.29379 * 136.19319 * 13 9 8 35 35 H 1.09008 * 110.29052 * 258.21885 * 13 9 8 36 36 H 1.09002 * 110.90384 * 215.34510 * 14 13 9 37 37 H 1.09004 * 110.84632 * 91.72535 * 14 13 9 38 38 H 1.09007 * 110.30993 * 281.73885 * 15 8 7 39 39 H 1.08996 * 110.31546 * 43.81252 * 15 8 7 40 40 H 1.08996 * 111.00408 * 272.01455 * 16 2 1 41 41 H 1.09000 * 111.00436 * 35.86750 * 16 2 1 42 42 H 1.08998 * 110.36547 * 204.15295 * 17 16 2 43 43 H 1.08997 * 110.45674 * 81.87704 * 17 16 2 44 44 H 0.96998 * 119.99982 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.88305 * 239.52425 * 27 18 17 46 46 H 1.08997 * 110.01405 * 118.43335 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0840 1.8039 -1.9544 6 6 2.2856 3.5774 -1.0272 7 6 3.0701 4.0450 0.0326 8 6 3.5348 5.3484 -0.0131 9 6 3.2148 6.1513 -1.0940 10 7 2.4701 5.6840 -2.0834 11 6 2.0022 4.4493 -2.0890 12 8 1.2441 4.0219 -3.1267 13 6 3.8365 7.5209 -0.9092 14 6 4.9245 7.3309 0.1722 15 6 4.3893 6.1209 0.9675 16 6 2.0827 -0.7948 1.2125 17 6 3.4673 -1.2456 0.6838 18 7 3.2471 -1.5461 -0.7426 19 6 4.0077 -2.3901 -1.5071 20 1 3.6748 -2.6711 -2.4952 21 6 5.2066 -2.8843 -1.0118 22 7 5.7063 -2.4008 0.1058 23 14 6.1109 -4.2355 -1.9315 24 1 7.1219 -3.6289 -2.8343 25 1 6.7891 -5.1285 -0.9579 26 1 5.1405 -5.0235 -2.7333 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3634 0.5247 -0.8837 29 1 -0.3634 -1.0276 -0.0127 30 1 -0.3635 0.5029 0.8961 31 1 2.5901 1.6844 0.7396 32 1 3.3086 3.4030 0.8677 33 1 1.7518 3.6238 -3.8470 34 1 4.2864 7.8609 -1.8420 35 1 3.0853 8.2345 -0.5704 36 1 4.9969 8.2118 0.8101 37 1 5.8878 7.1007 -0.2831 38 1 3.7866 6.4581 1.8108 39 1 5.2163 5.5030 1.3175 40 1 2.1885 -0.1515 2.0860 41 1 1.4514 -1.6547 1.4366 42 1 3.8030 -2.1379 1.2121 43 1 4.1968 -0.4433 0.7941 44 1 6.5442 -2.7459 0.4516 45 1 1.3141 -1.4754 -1.5781 46 1 2.3686 -0.0993 -2.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046831896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:15 Heat of formation + Delta-G solvation = -10.428862 kcal Electronic energy + Delta-G solvation = -28975.502549 eV Core-core repulsion = 25059.052637 eV Total energy + Delta-G solvation = -3916.449912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21665 -39.70009 -38.09572 -37.03086 -35.36473 -34.04640 -33.21308 -31.65591 -30.07132 -28.99149 -28.64852 -28.00354 -25.70533 -24.12591 -23.70793 -22.94060 -21.31137 -20.70331 -20.29519 -19.00964 -18.56360 -17.51643 -17.09757 -16.66397 -16.26642 -15.44438 -15.39561 -14.71000 -14.65097 -14.38956 -14.26558 -13.76598 -13.49964 -13.29690 -13.15136 -13.02411 -12.76866 -12.59417 -12.27493 -12.21803 -11.99555 -11.71158 -11.62613 -11.60271 -11.55575 -11.23555 -10.98589 -10.81808 -10.44827 -10.40308 -10.11334 -10.04437 -9.95725 -9.76712 -9.67065 -9.19716 -8.79113 -8.60469 -8.57678 -6.78178 -5.75297 -3.06137 0.47856 0.94292 2.89566 3.14694 3.39462 3.44130 3.45510 3.47894 3.69324 4.06713 4.14671 4.49662 4.53520 4.55077 4.65078 4.85345 4.90277 5.10577 5.20843 5.34320 5.35836 5.37116 5.42703 5.46898 5.54033 5.55333 5.60226 5.68041 5.71849 5.80045 5.89804 6.01838 6.14288 6.18481 6.23446 6.31017 6.40853 6.50318 6.69048 6.83944 7.12732 7.44042 7.46866 7.52217 7.71529 7.76228 7.81676 8.25665 8.48677 9.20190 9.81961 10.49544 11.38292 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.003365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.627128 B = 8318.081347 C = 9028.838713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 N -0.703 5.703 4 C 0.565 3.435 5 O -0.515 6.515 6 C -0.196 4.196 7 C -0.017 4.017 8 C -0.170 4.170 9 C 0.162 3.838 10 N -0.507 5.507 11 C 0.374 3.626 12 O -0.459 6.459 13 C -0.073 4.073 14 C -0.119 4.119 15 C -0.077 4.077 16 C -0.148 4.148 17 C 0.174 3.826 18 N -0.603 5.603 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.137 3.863 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.394 0.606 32 H 0.142 0.858 33 H 0.406 0.594 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 18.838 4.798 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.076 3.924 3 N -0.355 5.355 4 C 0.351 3.649 5 O -0.391 6.391 6 C -0.203 4.203 7 C -0.043 4.043 8 C -0.172 4.172 9 C 0.023 3.977 10 N -0.225 5.225 11 C 0.193 3.807 12 O -0.266 6.266 13 C -0.111 4.111 14 C -0.156 4.156 15 C -0.114 4.114 16 C -0.187 4.187 17 C 0.049 3.951 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.010 3.990 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.229 0.771 32 H 0.159 0.841 33 H 0.266 0.734 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.090 19.076 3.713 20.089 hybrid contribution 1.370 -1.310 0.229 1.909 sum -3.720 17.766 3.942 18.575 Atomic orbital electron populations 1.22039 0.94133 1.02309 1.02350 1.21341 0.93023 0.80047 0.98006 1.45874 1.53832 1.12798 1.22958 1.17634 0.80609 0.83850 0.82855 1.90780 1.37735 1.75999 1.34617 1.21137 1.04190 0.96320 0.98636 1.21195 0.92108 0.94306 0.96683 1.21366 1.02264 0.94700 0.98894 1.21822 0.91059 0.96577 0.88209 1.66361 1.11522 1.15507 1.29150 1.18867 0.87171 0.86268 0.88393 1.84707 1.32756 1.79181 1.29959 1.21140 0.97754 0.91602 1.00600 1.22371 0.98218 0.98269 0.96776 1.20964 0.98260 0.95677 0.96535 1.23352 1.01099 0.99045 0.95199 1.21389 0.89437 0.99411 0.84873 1.44484 1.30861 1.50815 1.06762 1.19041 0.99496 1.18366 0.98357 0.90682 1.24784 0.96826 1.00666 0.98163 1.69937 1.20551 1.43997 1.22367 0.86139 0.79590 0.81665 0.78608 1.21707 1.21635 1.20580 1.21602 0.90385 0.93085 0.93908 0.90869 0.91667 0.93152 0.77074 0.84075 0.73429 0.89349 0.88871 0.89685 0.90330 0.89664 0.89902 0.91794 0.90410 0.91165 0.95758 0.93830 0.95117 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.45 37.16 0.31 -2.04 16 2 C 0.16 2.86 0.81 -129.99 -0.11 2.76 16 3 N -0.70 -11.26 5.10 -46.94 -0.24 -11.50 16 4 C 0.57 9.60 6.99 -12.47 -0.09 9.51 16 5 O -0.51 -10.07 12.12 -16.43 -0.20 -10.27 16 6 C -0.20 -2.90 5.90 -104.72 -0.62 -3.52 16 7 C -0.02 -0.20 9.64 -38.88 -0.37 -0.58 16 8 C -0.17 -1.81 6.14 -104.20 -0.64 -2.45 16 9 C 0.16 1.88 7.32 -81.89 -0.60 1.28 16 10 N -0.51 -7.27 10.36 -8.88 -0.09 -7.36 16 11 C 0.37 5.70 7.77 -16.70 -0.13 5.57 16 12 O -0.46 -6.97 11.67 -39.70 -0.46 -7.43 16 13 C -0.07 -0.55 6.78 -26.64 -0.18 -0.74 16 14 C -0.12 -0.68 7.10 -25.18 -0.18 -0.86 16 15 C -0.08 -0.54 6.76 -26.88 -0.18 -0.72 16 16 C -0.15 -2.59 6.09 -24.58 -0.15 -2.74 16 17 C 0.17 4.04 5.40 -2.53 -0.01 4.02 16 18 N -0.60 -15.51 3.39 -170.08 -0.58 -16.09 16 19 C -0.22 -6.35 10.24 -15.06 -0.15 -6.50 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 21 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 22 N -0.92 -26.68 10.68 55.49 0.59 -26.09 16 23 Si 0.91 22.20 29.56 -169.99 -5.03 17.17 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.14 3.04 6.13 -3.06 -0.02 3.02 16 28 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 29 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 5.36 6.58 -40.82 -0.27 5.09 16 32 H 0.14 1.37 6.52 -52.49 -0.34 1.03 16 33 H 0.41 4.72 9.06 45.56 0.41 5.13 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 41 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 42 H 0.07 1.82 6.94 -51.93 -0.36 1.46 16 43 H 0.02 0.60 8.07 -51.93 -0.42 0.18 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.69 7.80 -51.93 -0.41 0.29 16 46 H 0.03 0.84 6.47 -51.93 -0.34 0.51 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -34.77 366.29 -9.51 -44.28 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.81 Total: 6.09 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -3.21 Total: 5.67 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.32 Total: -61.04 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.66 Total: -17.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.77 -9.51 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046831896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.851 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds