Wall clock time and date at job start Tue Mar 31 2020 17:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 110.64119 * 2 1 4 4 C 1.34774 * 120.00056 * 298.30994 * 3 2 1 5 5 O 1.21585 * 119.99847 * 0.02562 * 4 3 2 6 6 C 1.47531 * 119.99819 * 179.97438 * 4 3 2 7 7 C 1.39908 * 120.69304 * 359.95977 * 6 4 3 8 8 C 1.38450 * 118.54218 * 179.97438 * 7 6 4 9 9 C 1.38397 * 119.62595 * 0.08008 * 8 7 6 10 10 N 1.32360 * 120.60320 * 359.95163 * 9 8 7 11 11 C 1.32038 * 122.18756 * 0.02562 * 10 9 8 12 12 O 1.35429 * 119.78243 * 179.97438 * 11 10 9 13 13 C 1.51547 * 109.52623 * 179.97438 * 9 8 7 14 14 C 1.54572 * 105.24634 * 17.26435 * 13 9 8 15 15 C 1.51279 * 130.45990 * 180.02562 * 8 7 6 16 16 C 1.55160 * 110.87043 * 123.24697 * 2 1 3 17 17 C 1.54913 * 101.58126 * 153.93534 * 16 2 1 18 18 N 1.47420 * 104.83447 * 322.99335 * 17 16 2 19 19 C 1.36938 * 125.65255 * 204.09441 * 18 17 16 20 20 H 1.07993 * 120.00167 * 169.98124 * 19 18 17 21 21 C 1.38817 * 119.99213 * 349.98038 * 19 18 17 22 22 N 1.31613 * 120.00398 * 350.42430 * 21 19 18 23 23 Si 1.86803 * 119.99577 * 170.42342 * 21 19 18 24 24 H 1.48498 * 109.47242 * 94.14050 * 23 21 19 25 25 H 1.48496 * 109.46811 * 214.14199 * 23 21 19 26 26 H 1.48507 * 109.46951 * 334.13918 * 23 21 19 27 27 C 1.47023 * 108.70279 * 24.12585 * 18 17 16 28 28 H 1.09002 * 109.47206 * 59.30029 * 1 2 3 29 29 H 1.09004 * 109.47303 * 179.29365 * 1 2 3 30 30 H 1.08995 * 109.47891 * 299.29916 * 1 2 3 31 31 H 0.97003 * 120.00179 * 118.30640 * 3 2 1 32 32 H 1.07996 * 120.72798 * 0.02562 * 7 6 4 33 33 H 0.96706 * 113.99962 * 90.00773 * 12 11 10 34 34 H 1.08998 * 110.29379 * 136.19319 * 13 9 8 35 35 H 1.09008 * 110.29052 * 258.21885 * 13 9 8 36 36 H 1.09002 * 110.90384 * 215.34510 * 14 13 9 37 37 H 1.09004 * 110.84632 * 91.72535 * 14 13 9 38 38 H 1.09007 * 110.30993 * 281.73885 * 15 8 7 39 39 H 1.08996 * 110.31546 * 43.81252 * 15 8 7 40 40 H 1.08996 * 111.00408 * 272.01455 * 16 2 1 41 41 H 1.09000 * 111.00436 * 35.86750 * 16 2 1 42 42 H 1.08998 * 110.36547 * 204.15295 * 17 16 2 43 43 H 1.08997 * 110.45674 * 81.87704 * 17 16 2 44 44 H 0.96998 * 119.99982 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.88305 * 239.52425 * 27 18 17 46 46 H 1.08997 * 110.01405 * 118.43335 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0840 1.8039 -1.9544 6 6 2.2856 3.5774 -1.0272 7 6 3.0701 4.0450 0.0326 8 6 3.5348 5.3484 -0.0131 9 6 3.2148 6.1513 -1.0940 10 7 2.4701 5.6840 -2.0834 11 6 2.0022 4.4493 -2.0890 12 8 1.2441 4.0219 -3.1267 13 6 3.8365 7.5209 -0.9092 14 6 4.9245 7.3309 0.1722 15 6 4.3893 6.1209 0.9675 16 6 2.0827 -0.7948 1.2125 17 6 3.4673 -1.2456 0.6838 18 7 3.2471 -1.5461 -0.7426 19 6 4.0077 -2.3901 -1.5071 20 1 3.6748 -2.6711 -2.4952 21 6 5.2066 -2.8843 -1.0118 22 7 5.7063 -2.4008 0.1058 23 14 6.1109 -4.2355 -1.9315 24 1 7.1219 -3.6289 -2.8343 25 1 6.7891 -5.1285 -0.9579 26 1 5.1405 -5.0235 -2.7333 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3634 0.5247 -0.8837 29 1 -0.3634 -1.0276 -0.0127 30 1 -0.3635 0.5029 0.8961 31 1 2.5901 1.6844 0.7396 32 1 3.3086 3.4030 0.8677 33 1 1.7518 3.6238 -3.8470 34 1 4.2864 7.8609 -1.8420 35 1 3.0853 8.2345 -0.5704 36 1 4.9969 8.2118 0.8101 37 1 5.8878 7.1007 -0.2831 38 1 3.7866 6.4581 1.8108 39 1 5.2163 5.5030 1.3175 40 1 2.1885 -0.1515 2.0860 41 1 1.4514 -1.6547 1.4366 42 1 3.8030 -2.1379 1.2121 43 1 4.1968 -0.4433 0.7941 44 1 6.5442 -2.7459 0.4516 45 1 1.3141 -1.4754 -1.5781 46 1 2.3686 -0.0993 -2.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046831896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:14 Heat of formation + Delta-G solvation = -36.233543 kcal Electronic energy + Delta-G solvation = -28976.621524 eV Core-core repulsion = 25059.052637 eV Total energy + Delta-G solvation = -3917.568887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22890 -41.00703 -39.22337 -38.47271 -36.22769 -35.71951 -34.43672 -33.28862 -31.62540 -30.43490 -29.81683 -28.70345 -27.57240 -25.54345 -24.86622 -24.11891 -22.38233 -22.09609 -21.50617 -20.46382 -19.64230 -19.04785 -18.30525 -18.11563 -17.14219 -16.95506 -16.69406 -16.20489 -15.99300 -15.67025 -15.56098 -15.22294 -14.87573 -14.32604 -14.21981 -14.07006 -14.01827 -13.75236 -13.56882 -13.45260 -13.29940 -13.12483 -12.91541 -12.87489 -12.73664 -12.67122 -12.17051 -12.07382 -12.03592 -11.95168 -11.78113 -11.74461 -11.63119 -10.97301 -10.94679 -10.69562 -10.36873 -10.07855 -9.63217 -8.86213 -7.90875 -5.23911 -0.54038 -0.00717 1.44065 1.44652 1.54883 1.76396 1.99856 2.34267 2.47422 2.64097 3.23223 3.28574 3.36716 3.51184 3.68678 3.70834 3.81178 3.96673 3.99537 4.10761 4.15261 4.22564 4.33245 4.58895 4.61225 4.66413 4.75817 4.81034 4.83349 4.83667 4.88995 4.91017 4.94658 5.01587 5.07788 5.10254 5.22412 5.32725 5.36289 5.40231 5.41898 5.58226 5.62690 5.72749 6.19118 6.43309 6.54198 6.75511 7.07851 7.20713 7.74192 8.40506 9.20735 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.003365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.627128 B = 8318.081347 C = 9028.838713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.171 3.829 3 N -0.697 5.697 4 C 0.563 3.437 5 O -0.549 6.549 6 C -0.217 4.217 7 C -0.018 4.018 8 C -0.166 4.166 9 C 0.150 3.850 10 N -0.529 5.529 11 C 0.352 3.648 12 O -0.476 6.476 13 C -0.073 4.073 14 C -0.110 4.110 15 C -0.076 4.076 16 C -0.127 4.127 17 C 0.179 3.821 18 N -0.622 5.622 19 C -0.249 4.249 20 H 0.067 0.933 21 C -0.055 4.055 22 N -0.941 5.941 23 Si 0.974 3.026 24 H -0.288 1.288 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.136 3.864 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.407 0.593 32 H 0.164 0.836 33 H 0.413 0.587 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.005 0.995 44 H 0.250 0.750 45 H 0.024 0.976 46 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 20.475 6.998 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.085 3.915 3 N -0.349 5.349 4 C 0.350 3.650 5 O -0.428 6.428 6 C -0.224 4.224 7 C -0.043 4.043 8 C -0.168 4.168 9 C 0.012 3.988 10 N -0.248 5.248 11 C 0.173 3.827 12 O -0.285 6.285 13 C -0.111 4.111 14 C -0.147 4.147 15 C -0.113 4.113 16 C -0.166 4.166 17 C 0.054 3.946 18 N -0.348 5.348 19 C -0.378 4.378 20 H 0.085 0.915 21 C -0.249 4.249 22 N -0.590 5.590 23 Si 0.802 3.198 24 H -0.215 1.215 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.010 3.990 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.181 0.819 33 H 0.274 0.726 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -4.614 20.731 5.932 22.051 hybrid contribution 1.278 -1.728 -0.492 2.205 sum -3.336 19.002 5.440 20.045 Atomic orbital electron populations 1.21957 0.92092 1.02978 1.02868 1.21184 0.94320 0.80333 0.95667 1.45758 1.53909 1.11934 1.23327 1.17986 0.79996 0.84693 0.82340 1.90754 1.39336 1.76865 1.35823 1.20985 1.06121 0.95170 1.00081 1.21455 0.91169 0.95371 0.96335 1.21864 1.01528 0.94052 0.99377 1.22708 0.89840 0.98622 0.87615 1.66404 1.12632 1.15151 1.30648 1.19046 0.88067 0.87010 0.88614 1.84656 1.33784 1.79455 1.30568 1.21354 0.98534 0.89503 1.01700 1.22424 0.97293 0.98830 0.96197 1.21131 0.98148 0.95723 0.96274 1.23224 0.97235 1.00015 0.96102 1.21245 0.92393 0.97364 0.83621 1.44767 1.31296 1.50845 1.07909 1.19314 1.00391 1.19410 0.98692 0.91481 1.25543 0.97527 1.02658 0.99181 1.70104 1.20634 1.44813 1.23399 0.85151 0.78250 0.78950 0.77471 1.21514 1.21247 1.19850 1.21663 0.89220 0.92648 0.95452 0.92698 0.90877 0.90295 0.75529 0.81898 0.72558 0.88962 0.87201 0.86754 0.90216 0.87557 0.88930 0.87689 0.89250 0.94317 0.97750 0.94096 0.95801 0.97480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.45 71.98 0.61 -3.60 16 2 C 0.17 5.93 0.81 4.79 0.00 5.94 16 3 N -0.70 -21.83 5.10 -420.69 -2.14 -23.98 16 4 C 0.56 19.48 6.99 86.69 0.61 20.09 16 5 O -0.55 -22.43 12.12 16.78 0.20 -22.23 16 6 C -0.22 -6.50 5.90 -19.93 -0.12 -6.62 16 7 C -0.02 -0.40 9.64 22.73 0.22 -0.18 16 8 C -0.17 -3.19 6.14 -19.59 -0.12 -3.31 16 9 C 0.15 3.30 7.32 42.79 0.31 3.61 16 10 N -0.53 -15.31 10.36 -295.12 -3.06 -18.37 16 11 C 0.35 11.15 7.77 85.16 0.66 11.81 16 12 O -0.48 -15.46 11.67 -66.48 -0.78 -16.23 16 13 C -0.07 -0.91 6.78 30.65 0.21 -0.71 16 14 C -0.11 -0.83 7.10 31.60 0.22 -0.61 16 15 C -0.08 -0.78 6.76 30.50 0.21 -0.57 16 16 C -0.13 -4.21 6.09 31.99 0.19 -4.01 16 17 C 0.18 8.34 5.40 86.86 0.47 8.81 16 18 N -0.62 -32.81 3.39 -692.00 -2.35 -35.16 16 19 C -0.25 -14.50 10.24 84.03 0.86 -13.64 16 20 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 21 C -0.06 -3.16 5.40 84.86 0.46 -2.70 16 22 N -0.94 -55.42 10.68 21.65 0.23 -55.18 16 23 Si 0.97 46.20 29.56 68.60 2.03 48.22 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 27 C 0.14 6.23 6.13 86.73 0.53 6.76 16 28 H 0.05 1.87 6.37 -2.39 -0.02 1.86 16 29 H 0.07 2.06 8.12 -2.38 -0.02 2.04 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.41 10.38 6.58 -92.71 -0.61 9.77 16 32 H 0.16 2.80 6.52 -2.91 -0.02 2.78 16 33 H 0.41 10.75 9.06 -74.05 -0.67 10.08 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 2.65 8.04 -2.39 -0.02 2.63 16 41 H 0.09 2.81 8.05 -2.39 -0.02 2.79 16 42 H 0.04 2.03 6.94 -2.39 -0.02 2.02 16 43 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 46 H 0.01 0.37 6.47 -2.39 -0.02 0.35 16 Total: -1.00 -79.04 366.29 -0.79 -79.83 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.25 Total: 22.03 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 5.33 Total: 21.06 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -7.32 Total: -132.69 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.57 Total: -38.46 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.04 -0.79 -79.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046831896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.595 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds