Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21551 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.47859 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.39708 * 120.07476 * 359.72176 * 5 3 2 7 7 C 1.38054 * 120.14922 * 179.76159 * 6 5 3 8 8 C 1.38097 * 120.29278 * 0.52024 * 7 6 5 9 9 C 1.39663 * 120.14943 * 359.73379 * 8 7 6 10 10 C 1.47857 * 120.07870 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99940 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99875 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00188 * 179.97438 * 12 10 9 14 14 C 1.53002 * 110.88103 * 59.30158 * 13 12 10 15 15 C 1.55155 * 111.00693 * 183.18141 * 13 12 10 16 16 C 1.54425 * 102.89377 * 82.59390 * 15 13 12 17 17 N 1.47027 * 107.28095 * 22.18981 * 16 15 13 18 18 C 1.36931 * 125.64754 * 181.02724 * 17 16 15 19 19 H 1.08002 * 119.99729 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00356 * 0.03340 * 18 17 16 21 21 N 1.31625 * 119.99526 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00321 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46928 * 90.00253 * 22 20 18 24 24 H 1.48494 * 109.47442 * 210.00114 * 22 20 18 25 25 H 1.48501 * 109.47397 * 330.00584 * 22 20 18 26 26 C 1.47422 * 108.70161 * 1.05765 * 17 16 15 27 27 C 1.39291 * 120.07939 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 29 29 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 31 31 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.08008 * 119.92118 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.85194 * 180.25685 * 7 6 5 34 34 H 1.08005 * 119.92622 * 179.71754 * 8 7 6 35 35 H 0.97003 * 119.99792 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47047 * 60.70328 * 14 13 12 37 37 H 1.09006 * 109.46973 * 180.70197 * 14 13 12 38 38 H 1.09000 * 109.47528 * 300.69794 * 14 13 12 39 39 H 1.08997 * 110.72222 * 200.93877 * 15 13 12 40 40 H 1.09002 * 110.71619 * 324.20868 * 15 13 12 41 41 H 1.08999 * 109.87804 * 262.76641 * 16 15 13 42 42 H 1.08996 * 109.87446 * 141.60702 * 16 15 13 43 43 H 0.96996 * 119.99579 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.36885 * 217.03424 * 26 17 16 45 45 H 1.08999 * 110.46152 * 94.75700 * 26 17 16 46 46 H 1.08001 * 120.14296 * 359.95639 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3176 -0.0417 0.0070 7 6 5.6981 -0.0434 0.0026 8 6 6.3962 1.1481 0.0026 9 6 5.7088 2.3638 0.0015 10 6 6.4579 3.6387 0.0021 11 8 5.8581 4.6959 0.0017 12 7 7.8056 3.6284 0.0032 13 6 8.5478 4.8914 0.0033 14 6 8.1939 5.7319 1.2319 15 6 10.0765 4.6382 -0.0757 16 6 10.3139 4.4320 -1.5876 17 7 9.1961 5.0719 -2.2966 18 6 9.0214 5.0959 -3.6545 19 1 8.1632 5.5950 -4.0797 20 6 9.9471 4.4787 -4.4845 21 7 10.9927 3.8699 -3.9661 22 14 9.7092 4.5120 -6.3369 23 1 10.3764 5.7132 -6.9001 24 1 10.3039 3.2896 -6.9345 25 1 8.2581 4.5598 -6.6488 26 6 8.2949 5.6841 -1.3034 27 6 4.3155 2.3727 0.0000 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8401 0.0004 32 1 3.7775 -0.9770 0.0111 33 1 6.2345 -0.9808 0.0034 34 1 7.4762 1.1398 0.0037 35 1 8.2841 2.7846 0.0032 36 1 8.4568 5.1826 2.1359 37 1 8.7484 6.6699 1.2024 38 1 7.1243 5.9421 1.2325 39 1 10.6301 5.5042 0.2870 40 1 10.3485 3.7432 0.4838 41 1 10.3372 3.3667 -1.8172 42 1 11.2545 4.8974 -1.8819 43 1 11.6394 3.4382 -4.5460 44 1 7.2565 5.5775 -1.6168 45 1 8.5418 6.7364 -1.1624 46 1 3.7791 3.3100 -0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046846139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -11.297628 kcal Electronic energy + Delta-G solvation = -28411.178482 eV Core-core repulsion = 24494.690898 eV Total energy + Delta-G solvation = -3916.487584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61052 -39.79703 -38.31777 -37.03908 -34.97506 -33.99866 -32.47111 -31.28972 -31.17388 -29.81904 -28.65736 -27.23335 -25.65855 -24.42739 -23.70592 -23.09578 -21.39679 -20.52221 -20.12767 -19.06891 -18.66338 -17.02326 -16.61806 -16.24988 -16.21806 -15.56324 -15.49890 -14.82460 -14.68697 -14.57913 -14.42014 -13.93105 -13.77539 -13.71919 -13.38415 -13.19751 -12.81492 -12.67213 -12.53081 -12.17944 -11.99977 -11.88165 -11.77963 -11.64530 -11.49966 -10.87949 -10.87228 -10.39982 -10.36405 -10.25067 -10.06914 -10.00109 -9.64428 -9.53013 -9.34530 -9.19867 -9.19389 -8.65066 -8.51999 -6.78405 -5.69403 -3.00896 0.47662 0.93727 2.46797 2.83981 3.16624 3.41368 3.42942 3.47299 3.49433 3.85999 4.34986 4.48202 4.52932 4.61916 4.83057 4.88409 4.98504 5.12198 5.17239 5.20168 5.37488 5.42245 5.48072 5.49547 5.62924 5.69318 5.73413 5.97655 5.99782 6.03372 6.06650 6.11871 6.15244 6.18224 6.36894 6.40142 6.52040 6.57397 6.69734 6.84431 7.12351 7.12906 7.55564 7.56768 7.81125 7.87206 7.91997 8.27645 8.53302 9.25529 9.85368 10.51316 11.42743 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.003192 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.426697 B = 8770.580223 C = 9789.279178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.529 6.529 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.132 4.132 8 C -0.057 4.057 9 C -0.130 4.130 10 C 0.559 3.441 11 O -0.531 6.531 12 N -0.694 5.694 13 C 0.157 3.843 14 C -0.151 4.151 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.131 3.869 27 C -0.001 4.001 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.401 0.599 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.397 0.603 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.053 0.947 45 H 0.027 0.973 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -12.858 13.176 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.347 3.653 4 O -0.406 6.406 5 C -0.152 4.152 6 C -0.088 4.088 7 C -0.150 4.150 8 C -0.076 4.076 9 C -0.133 4.133 10 C 0.345 3.655 11 O -0.409 6.409 12 N -0.345 5.345 13 C 0.070 3.930 14 C -0.210 4.210 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.004 3.996 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.614 -11.398 12.969 21.382 hybrid contribution 0.521 -1.033 -1.149 1.630 sum -12.092 -12.430 11.821 20.987 Atomic orbital electron populations 1.21561 0.79124 1.02288 1.02635 1.45689 1.07926 1.08547 1.76539 1.18272 0.87175 0.83758 0.76048 1.90810 1.69821 1.31082 1.48873 1.19794 0.92705 0.94304 1.08395 1.21398 0.94727 0.96679 0.95955 1.21036 0.93794 0.98431 1.01758 1.21621 1.00534 0.91697 0.93747 1.20089 0.94010 0.93834 1.05373 1.18016 0.82313 0.88345 0.76778 1.90740 1.68749 1.31743 1.49683 1.45718 1.05399 1.09509 1.73843 1.21515 0.91524 0.83819 0.96110 1.22016 1.03609 0.99308 0.96035 1.23256 0.92975 1.01253 1.01075 1.21173 0.91480 0.97837 0.84244 1.44439 1.23702 1.63304 1.01452 1.19073 1.06415 1.29134 0.80181 0.90588 1.24752 0.97276 1.00589 0.97971 1.69948 1.13495 1.40944 1.33005 0.86133 0.77452 0.77021 0.85309 1.21653 1.21756 1.20746 1.21888 0.95580 0.94305 0.87787 1.21381 0.92522 0.98445 0.89762 0.92035 0.90540 0.91977 0.76423 0.85457 0.84619 0.84833 0.76821 0.93143 0.91789 0.90648 0.90757 0.91773 0.93684 0.93799 0.93919 0.92852 0.95576 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.73 -5.88 5.66 -68.04 -0.39 -6.26 16 3 C 0.56 6.90 7.77 -12.32 -0.10 6.81 16 4 O -0.53 -8.70 16.34 5.32 0.09 -8.62 16 5 C -0.15 -1.76 5.87 -105.02 -0.62 -2.38 16 6 C -0.07 -0.58 9.54 -39.10 -0.37 -0.96 16 7 C -0.13 -1.15 10.02 -39.70 -0.40 -1.55 16 8 C -0.06 -0.64 9.54 -39.10 -0.37 -1.01 16 9 C -0.13 -1.87 5.87 -105.02 -0.62 -2.48 16 10 C 0.56 9.66 7.15 -12.32 -0.09 9.57 16 11 O -0.53 -10.78 13.15 5.32 0.07 -10.71 16 12 N -0.69 -11.36 5.13 -46.55 -0.24 -11.59 16 13 C 0.16 2.78 0.82 -129.67 -0.11 2.67 16 14 C -0.15 -2.34 8.57 37.16 0.32 -2.02 16 15 C -0.15 -2.57 5.99 -24.84 -0.15 -2.71 16 16 C 0.18 4.14 5.37 -3.01 -0.02 4.13 16 17 N -0.60 -15.48 3.39 -170.01 -0.58 -16.05 16 18 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.93 -26.87 10.31 55.49 0.57 -26.30 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.13 2.92 6.13 -2.53 -0.02 2.90 16 27 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 1.90 6.85 -40.82 -0.28 1.62 16 32 H 0.13 0.59 6.39 -52.48 -0.34 0.26 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.13 1.28 6.39 -52.48 -0.34 0.94 16 35 H 0.40 5.60 6.52 -40.82 -0.27 5.33 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 38 H 0.07 1.29 6.22 -51.93 -0.32 0.97 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16 45 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 46 H 0.15 2.46 7.23 -52.49 -0.38 2.08 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -36.04 373.20 -8.73 -44.77 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.37 Total: 4.66 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.49 Total: 7.01 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.63 Total: -60.21 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.04 -8.73 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046846139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.473 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds