Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21551 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.47859 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.39708 * 120.07476 * 359.72176 * 5 3 2 7 7 C 1.38054 * 120.14922 * 179.76159 * 6 5 3 8 8 C 1.38097 * 120.29278 * 0.52024 * 7 6 5 9 9 C 1.39663 * 120.14943 * 359.73379 * 8 7 6 10 10 C 1.47857 * 120.07870 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99940 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99875 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00188 * 179.97438 * 12 10 9 14 14 C 1.53002 * 110.88103 * 59.30158 * 13 12 10 15 15 C 1.55155 * 111.00693 * 183.18141 * 13 12 10 16 16 C 1.54425 * 102.89377 * 82.59390 * 15 13 12 17 17 N 1.47027 * 107.28095 * 22.18981 * 16 15 13 18 18 C 1.36931 * 125.64754 * 181.02724 * 17 16 15 19 19 H 1.08002 * 119.99729 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00356 * 0.03340 * 18 17 16 21 21 N 1.31625 * 119.99526 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00321 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46928 * 90.00253 * 22 20 18 24 24 H 1.48494 * 109.47442 * 210.00114 * 22 20 18 25 25 H 1.48501 * 109.47397 * 330.00584 * 22 20 18 26 26 C 1.47422 * 108.70161 * 1.05765 * 17 16 15 27 27 C 1.39291 * 120.07939 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 29 29 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 31 31 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.08008 * 119.92118 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.85194 * 180.25685 * 7 6 5 34 34 H 1.08005 * 119.92622 * 179.71754 * 8 7 6 35 35 H 0.97003 * 119.99792 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47047 * 60.70328 * 14 13 12 37 37 H 1.09006 * 109.46973 * 180.70197 * 14 13 12 38 38 H 1.09000 * 109.47528 * 300.69794 * 14 13 12 39 39 H 1.08997 * 110.72222 * 200.93877 * 15 13 12 40 40 H 1.09002 * 110.71619 * 324.20868 * 15 13 12 41 41 H 1.08999 * 109.87804 * 262.76641 * 16 15 13 42 42 H 1.08996 * 109.87446 * 141.60702 * 16 15 13 43 43 H 0.96996 * 119.99579 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.36885 * 217.03424 * 26 17 16 45 45 H 1.08999 * 110.46152 * 94.75700 * 26 17 16 46 46 H 1.08001 * 120.14296 * 359.95639 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3176 -0.0417 0.0070 7 6 5.6981 -0.0434 0.0026 8 6 6.3962 1.1481 0.0026 9 6 5.7088 2.3638 0.0015 10 6 6.4579 3.6387 0.0021 11 8 5.8581 4.6959 0.0017 12 7 7.8056 3.6284 0.0032 13 6 8.5478 4.8914 0.0033 14 6 8.1939 5.7319 1.2319 15 6 10.0765 4.6382 -0.0757 16 6 10.3139 4.4320 -1.5876 17 7 9.1961 5.0719 -2.2966 18 6 9.0214 5.0959 -3.6545 19 1 8.1632 5.5950 -4.0797 20 6 9.9471 4.4787 -4.4845 21 7 10.9927 3.8699 -3.9661 22 14 9.7092 4.5120 -6.3369 23 1 10.3764 5.7132 -6.9001 24 1 10.3039 3.2896 -6.9345 25 1 8.2581 4.5598 -6.6488 26 6 8.2949 5.6841 -1.3034 27 6 4.3155 2.3727 0.0000 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8401 0.0004 32 1 3.7775 -0.9770 0.0111 33 1 6.2345 -0.9808 0.0034 34 1 7.4762 1.1398 0.0037 35 1 8.2841 2.7846 0.0032 36 1 8.4568 5.1826 2.1359 37 1 8.7484 6.6699 1.2024 38 1 7.1243 5.9421 1.2325 39 1 10.6301 5.5042 0.2870 40 1 10.3485 3.7432 0.4838 41 1 10.3372 3.3667 -1.8172 42 1 11.2545 4.8974 -1.8819 43 1 11.6394 3.4382 -4.5460 44 1 7.2565 5.5775 -1.6168 45 1 8.5418 6.7364 -1.1624 46 1 3.7791 3.3100 -0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046846139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -38.188678 kcal Electronic energy + Delta-G solvation = -28412.344565 eV Core-core repulsion = 24494.690898 eV Total energy + Delta-G solvation = -3917.653668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70371 -40.97833 -39.47222 -38.47189 -35.82232 -35.73268 -33.96560 -32.63862 -32.14503 -31.34753 -30.30821 -27.94059 -27.53255 -25.69915 -25.08502 -24.16500 -22.48017 -22.06483 -21.42163 -20.46983 -19.75260 -18.84660 -17.73527 -17.32008 -17.18610 -16.88183 -16.65737 -16.38368 -16.09844 -15.89577 -15.59207 -15.36117 -15.07994 -14.80470 -14.63947 -14.24261 -14.11093 -13.88957 -13.59940 -13.52739 -13.31040 -13.21296 -13.08828 -12.86860 -12.83682 -12.76302 -12.46071 -12.12368 -12.05123 -11.99131 -11.71345 -11.57780 -11.24514 -10.75472 -10.70896 -10.38651 -10.18752 -10.02338 -9.93602 -8.87012 -7.86793 -5.20176 -0.40665 -0.02509 1.42820 1.44003 1.52480 1.52999 1.98577 2.06592 2.25429 2.47312 2.84845 3.30945 3.49393 3.58909 3.65000 3.74311 3.81224 4.01552 4.03469 4.08954 4.18317 4.32370 4.41631 4.60432 4.60597 4.64580 4.68511 4.77122 4.85216 4.86750 4.91783 4.94317 5.01358 5.07329 5.13570 5.20017 5.24129 5.31791 5.36274 5.41493 5.61758 5.67819 5.72802 5.77308 6.19589 6.44100 6.58342 7.11487 7.11608 7.23693 7.76198 8.40692 9.22873 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.003192 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.426697 B = 8770.580223 C = 9789.279178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.553 3.447 4 O -0.586 6.586 5 C -0.158 4.158 6 C -0.045 4.045 7 C -0.119 4.119 8 C -0.056 4.056 9 C -0.154 4.154 10 C 0.553 3.447 11 O -0.574 6.574 12 N -0.689 5.689 13 C 0.167 3.833 14 C -0.142 4.142 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.056 4.056 21 N -0.942 5.942 22 Si 0.972 3.028 23 H -0.286 1.286 24 H -0.286 1.286 25 H -0.279 1.279 26 C 0.127 3.873 27 C -0.027 4.027 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.421 0.579 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.151 0.849 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.022 0.978 42 H 0.010 0.990 43 H 0.249 0.751 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 -16.746 14.260 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.341 3.659 4 O -0.467 6.467 5 C -0.162 4.162 6 C -0.063 4.063 7 C -0.136 4.136 8 C -0.075 4.075 9 C -0.157 4.157 10 C 0.341 3.659 11 O -0.455 6.455 12 N -0.340 5.340 13 C 0.080 3.920 14 C -0.200 4.200 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.346 5.346 18 C -0.373 4.373 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.591 5.591 22 Si 0.801 3.199 23 H -0.213 1.213 24 H -0.212 1.212 25 H -0.205 1.205 26 C 0.001 3.999 27 C -0.047 4.047 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.066 0.934 31 H 0.259 0.741 32 H 0.195 0.805 33 H 0.199 0.801 34 H 0.168 0.832 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.040 0.960 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.168 -15.356 14.078 24.126 hybrid contribution 0.316 0.115 -1.513 1.550 sum -11.852 -15.241 12.564 23.035 Atomic orbital electron populations 1.21755 0.78052 1.04787 1.01540 1.45573 1.08649 1.07995 1.74250 1.18505 0.87541 0.84175 0.75676 1.90783 1.70802 1.33305 1.51783 1.19850 0.92612 0.94679 1.09024 1.21921 0.95019 0.96913 0.92453 1.21562 0.93879 0.99011 0.99192 1.21895 1.01498 0.91235 0.92829 1.19881 0.93671 0.93731 1.08456 1.18574 0.82530 0.89104 0.75670 1.90712 1.69567 1.33623 1.51593 1.45647 1.05237 1.09605 1.73523 1.21377 0.91934 0.84211 0.94521 1.21941 1.02438 0.99832 0.95837 1.23137 0.92539 1.03937 0.96912 1.20994 0.89336 0.95715 0.87960 1.44669 1.25041 1.63629 1.01274 1.19280 1.06349 1.29514 0.82121 0.91843 1.25475 0.97084 1.00428 1.01931 1.70129 1.13788 1.41150 1.34060 0.85179 0.77343 0.77018 0.80377 1.21315 1.21154 1.20481 1.21983 0.93307 0.94963 0.89651 1.21181 0.92919 0.98384 0.92255 0.92998 0.86134 0.93360 0.74083 0.80482 0.80124 0.83166 0.75367 0.90243 0.90582 0.92729 0.88914 0.87932 0.95961 0.97195 0.94183 0.95838 0.95772 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.70 127.77 1.37 2.30 16 2 N -0.71 -9.74 5.66 -487.45 -2.76 -12.50 16 3 C 0.55 13.61 7.77 86.79 0.67 14.28 16 4 O -0.59 -20.61 16.34 -3.88 -0.06 -20.67 16 5 C -0.16 -3.65 5.87 -20.12 -0.12 -3.77 16 6 C -0.04 -0.58 9.54 22.58 0.22 -0.36 16 7 C -0.12 -1.52 10.02 22.19 0.22 -1.30 16 8 C -0.06 -1.11 9.54 22.58 0.22 -0.90 16 9 C -0.15 -4.53 5.87 -20.12 -0.12 -4.65 16 10 C 0.55 19.95 7.15 86.79 0.62 20.57 16 11 O -0.57 -25.19 13.15 -3.88 -0.05 -25.24 16 12 N -0.69 -22.42 5.13 -419.46 -2.15 -24.57 16 13 C 0.17 5.85 0.82 5.00 0.00 5.85 16 14 C -0.14 -4.26 8.57 71.98 0.62 -3.64 16 15 C -0.13 -4.20 5.99 31.82 0.19 -4.01 16 16 C 0.18 8.71 5.37 86.76 0.47 9.17 16 17 N -0.62 -32.87 3.39 -691.80 -2.35 -35.22 16 18 C -0.24 -14.35 10.28 84.04 0.86 -13.49 16 19 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 21 N -0.94 -55.53 10.31 21.65 0.22 -55.30 16 22 Si 0.97 46.91 29.55 68.60 2.03 48.93 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 26 C 0.13 5.88 6.13 86.86 0.53 6.41 16 27 C -0.03 -0.84 9.14 22.79 0.21 -0.63 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.42 2.11 6.85 -92.71 -0.64 1.48 16 32 H 0.18 0.47 6.39 -2.91 -0.02 0.45 16 33 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 34 H 0.15 2.42 6.39 -2.91 -0.02 2.40 16 35 H 0.41 10.95 6.52 -92.71 -0.60 10.35 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.08 8.13 -2.38 -0.02 2.06 16 38 H 0.05 1.90 6.22 -2.39 -0.01 1.88 16 39 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 40 H 0.10 2.66 8.07 -2.39 -0.02 2.64 16 41 H 0.02 1.14 7.38 -2.39 -0.02 1.12 16 42 H 0.01 0.53 7.51 -2.39 -0.02 0.51 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.02 1.21 6.58 -2.39 -0.02 1.19 16 45 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 46 H 0.11 4.19 7.23 -2.91 -0.02 4.16 16 Total: -1.00 -87.05 373.20 1.09 -85.96 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -0.22 Total: 15.50 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.43 Total: 23.10 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -7.04 Total: -127.59 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.11 Total: -45.91 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -87.05 1.09 -85.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046846139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.776 kcal (2) G-P(sol) polarization free energy of solvation -87.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds