Wall clock time and date at job start Tue Mar 31 2020 17:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99739 * 2 1 4 4 O 1.21550 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.47857 * 119.99529 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.07773 * 359.97438 * 5 3 2 7 7 C 1.38055 * 120.14396 * 180.02562 * 6 5 3 8 8 C 1.38101 * 120.29789 * 359.72715 * 7 6 5 9 9 C 1.39669 * 120.14409 * 0.55317 * 8 7 6 10 10 C 1.47862 * 120.07186 * 179.71679 * 9 8 7 11 11 O 1.21550 * 119.99726 * 179.72316 * 10 9 8 12 12 N 1.34774 * 120.00195 * 359.72862 * 10 9 8 13 13 C 1.46494 * 120.00081 * 179.97438 * 12 10 9 14 14 C 1.53000 * 110.91809 * 303.90144 * 13 12 10 15 15 C 1.55157 * 111.00680 * 179.97438 * 13 12 10 16 16 C 1.54321 * 103.10033 * 277.51720 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46954 * 89.99962 * 22 20 18 24 24 H 1.48501 * 109.47166 * 209.99792 * 22 20 18 25 25 H 1.48495 * 109.47323 * 330.00243 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.39303 * 120.06806 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.47498 * 59.99842 * 1 2 3 29 29 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47404 * 299.99702 * 1 2 3 31 31 H 0.96991 * 119.99989 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.92509 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.84887 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.92895 * 180.29071 * 8 7 6 35 35 H 0.97003 * 119.99778 * 359.97438 * 12 10 9 36 36 H 1.08998 * 109.47366 * 296.10172 * 14 13 12 37 37 H 1.09006 * 109.46883 * 56.09371 * 14 13 12 38 38 H 1.08999 * 109.47315 * 176.09315 * 14 13 12 39 39 H 1.09002 * 110.72219 * 159.06416 * 15 13 12 40 40 H 1.09003 * 110.71618 * 35.97029 * 15 13 12 41 41 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 42 42 H 1.09004 * 109.87910 * 218.29695 * 16 15 13 43 43 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 45 45 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 46 46 H 1.08000 * 120.14929 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3175 -0.0417 0.0017 7 6 5.6981 -0.0433 0.0027 8 6 6.3962 1.1482 -0.0029 9 6 5.7087 2.3639 0.0019 10 6 6.4579 3.6388 0.0021 11 8 5.8582 4.6960 0.0012 12 7 7.8056 3.6284 0.0032 13 6 8.5477 4.8915 0.0029 14 6 8.1382 5.7654 -1.1843 15 6 10.0783 4.6372 0.0050 16 6 10.3893 4.3873 1.4957 17 7 9.3090 5.0070 2.2769 18 6 9.2013 4.9919 3.6420 19 1 8.3660 5.4788 4.1231 20 6 10.1658 4.3508 4.4073 21 7 11.1835 3.7569 3.8208 22 14 10.0185 4.3296 6.2693 23 1 9.2453 3.1340 6.6911 24 1 11.3745 4.2803 6.8726 25 1 9.3186 5.5576 6.7245 26 6 8.3611 5.6480 1.3473 27 6 4.3154 2.3728 0.0011 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.7775 -0.9770 0.0017 33 1 6.2345 -0.9807 0.0031 34 1 7.4762 1.1399 -0.0068 35 1 8.2841 2.7847 0.0042 36 1 8.4102 5.2659 -2.1141 37 1 7.0606 5.9280 -1.1611 38 1 8.6517 6.7249 -1.1234 39 1 10.6153 5.5130 -0.3595 40 1 10.3242 3.7594 -0.5927 41 1 10.4220 3.3159 1.6931 42 1 11.3443 4.8437 1.7567 43 1 11.8577 3.3093 4.3555 44 1 7.3392 5.5328 1.7083 45 1 8.6034 6.7039 1.2268 46 1 3.7790 3.3101 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046846140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:22 Heat of formation + Delta-G solvation = -11.135462 kcal Electronic energy + Delta-G solvation = -28383.045307 eV Core-core repulsion = 24466.564754 eV Total energy + Delta-G solvation = -3916.480552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61490 -39.79731 -38.31404 -37.05054 -34.98011 -33.99708 -32.47777 -31.29377 -31.18478 -29.81730 -28.65574 -27.23674 -25.65726 -24.42823 -23.71549 -23.10269 -21.40162 -20.51675 -20.12514 -19.07920 -18.67524 -17.02540 -16.62842 -16.26290 -16.22273 -15.55909 -15.50367 -14.82333 -14.69671 -14.58044 -14.43019 -13.93588 -13.78425 -13.72324 -13.38910 -13.20166 -12.82441 -12.67611 -12.53693 -12.18397 -11.99745 -11.87777 -11.78954 -11.64999 -11.50279 -10.90255 -10.85869 -10.39342 -10.35998 -10.25706 -10.07997 -10.01093 -9.65363 -9.53498 -9.33472 -9.20139 -9.19763 -8.66523 -8.52026 -6.79279 -5.70172 -3.01800 0.47137 0.93133 2.46184 2.83540 3.15670 3.40718 3.42439 3.46749 3.48876 3.85086 4.34590 4.47816 4.52168 4.61587 4.82767 4.87903 4.98146 5.12257 5.16825 5.19685 5.37151 5.41890 5.47494 5.49250 5.62548 5.68986 5.73149 5.97380 5.99938 6.02985 6.06846 6.11307 6.15400 6.18461 6.37312 6.40588 6.51872 6.57210 6.70536 6.82283 7.11803 7.11988 7.54706 7.56140 7.80417 7.86924 7.91465 8.26803 8.52275 9.24664 9.84478 10.50434 11.41953 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003146 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.966334 B = 8897.672018 C = 9896.737991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.529 6.529 5 C -0.149 4.149 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.057 4.057 9 C -0.130 4.130 10 C 0.559 3.441 11 O -0.532 6.532 12 N -0.694 5.694 13 C 0.157 3.843 14 C -0.153 4.153 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.133 3.867 27 C -0.001 4.001 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.401 0.599 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.397 0.603 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 -12.460 -12.850 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.348 3.652 4 O -0.406 6.406 5 C -0.152 4.152 6 C -0.087 4.087 7 C -0.150 4.150 8 C -0.076 4.076 9 C -0.133 4.133 10 C 0.345 3.655 11 O -0.410 6.410 12 N -0.344 5.344 13 C 0.070 3.930 14 C -0.212 4.212 15 C -0.186 4.186 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.006 3.994 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.206 -10.993 -12.652 21.337 hybrid contribution 0.567 -1.085 1.148 1.679 sum -12.638 -12.078 -11.503 20.927 Atomic orbital electron populations 1.21560 0.79123 1.02293 1.02633 1.45688 1.07927 1.08549 1.76534 1.18273 0.87173 0.83756 0.76045 1.90809 1.69819 1.31084 1.48884 1.19795 0.92705 0.94304 1.08410 1.21399 0.94726 0.96684 0.95930 1.21040 0.93793 0.98444 1.01728 1.21629 1.00553 0.91697 0.93705 1.20089 0.94009 0.93827 1.05421 1.18026 0.82316 0.88346 0.76792 1.90729 1.68760 1.31711 1.49787 1.45715 1.05386 1.09573 1.73739 1.21597 0.91382 0.83735 0.96276 1.22038 1.03910 0.99058 0.96169 1.23237 0.92990 1.01312 1.01030 1.21158 0.91869 0.97893 0.83833 1.44439 1.23888 1.62982 1.01611 1.19072 1.06638 1.29001 0.80141 0.90586 1.24754 0.97261 1.00576 0.97977 1.69944 1.13368 1.40757 1.33299 0.86130 0.76710 0.77752 0.85297 1.21727 1.21727 1.20709 1.21966 0.94835 0.94332 0.88295 1.21381 0.92512 0.98438 0.89784 0.92034 0.90538 0.91979 0.76423 0.85450 0.84608 0.84813 0.76755 0.93182 0.90237 0.91816 0.90770 0.91793 0.93688 0.93774 0.93902 0.93183 0.95513 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.83 5.66 -68.04 -0.39 -6.22 16 3 C 0.56 6.86 7.77 -12.32 -0.10 6.76 16 4 O -0.53 -8.65 16.34 5.32 0.09 -8.57 16 5 C -0.15 -1.75 5.87 -105.02 -0.62 -2.37 16 6 C -0.07 -0.58 9.54 -39.10 -0.37 -0.95 16 7 C -0.13 -1.15 10.02 -39.70 -0.40 -1.55 16 8 C -0.06 -0.63 9.54 -39.10 -0.37 -1.01 16 9 C -0.13 -1.86 5.87 -105.02 -0.62 -2.48 16 10 C 0.56 9.59 7.15 -12.32 -0.09 9.51 16 11 O -0.53 -10.69 13.19 5.32 0.07 -10.62 16 12 N -0.69 -11.35 5.13 -46.31 -0.24 -11.59 16 13 C 0.16 2.78 0.83 -129.41 -0.11 2.67 16 14 C -0.15 -2.39 8.61 37.16 0.32 -2.07 16 15 C -0.15 -2.57 5.96 -24.90 -0.15 -2.72 16 16 C 0.18 4.13 5.36 -3.07 -0.02 4.11 16 17 N -0.60 -15.42 3.40 -169.76 -0.58 -16.00 16 18 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.93 -26.79 10.31 55.49 0.57 -26.22 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.13 2.94 6.19 -2.26 -0.01 2.92 16 27 C 0.00 -0.02 9.14 -38.78 -0.35 -0.38 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 1.88 6.85 -40.82 -0.28 1.60 16 32 H 0.13 0.59 6.39 -52.48 -0.34 0.25 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.13 1.29 6.39 -52.49 -0.34 0.95 16 35 H 0.40 5.66 6.54 -40.82 -0.27 5.40 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.37 5.92 -51.93 -0.31 1.06 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.04 1.13 7.38 -51.93 -0.38 0.75 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.05 1.20 6.89 -51.93 -0.36 0.84 16 45 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 46 H 0.15 2.44 7.23 -52.49 -0.38 2.06 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -35.82 373.29 -8.73 -44.55 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.37 Total: 4.76 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.49 Total: 6.89 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.63 Total: -60.03 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.16 Total: -19.18 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.82 -8.73 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046846140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds