Wall clock time and date at job start Tue Mar 31 2020 17:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99739 * 2 1 4 4 O 1.21550 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.47857 * 119.99529 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.07773 * 359.97438 * 5 3 2 7 7 C 1.38055 * 120.14396 * 180.02562 * 6 5 3 8 8 C 1.38101 * 120.29789 * 359.72715 * 7 6 5 9 9 C 1.39669 * 120.14409 * 0.55317 * 8 7 6 10 10 C 1.47862 * 120.07186 * 179.71679 * 9 8 7 11 11 O 1.21550 * 119.99726 * 179.72316 * 10 9 8 12 12 N 1.34774 * 120.00195 * 359.72862 * 10 9 8 13 13 C 1.46494 * 120.00081 * 179.97438 * 12 10 9 14 14 C 1.53000 * 110.91809 * 303.90144 * 13 12 10 15 15 C 1.55157 * 111.00680 * 179.97438 * 13 12 10 16 16 C 1.54321 * 103.10033 * 277.51720 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46954 * 89.99962 * 22 20 18 24 24 H 1.48501 * 109.47166 * 209.99792 * 22 20 18 25 25 H 1.48495 * 109.47323 * 330.00243 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.39303 * 120.06806 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.47498 * 59.99842 * 1 2 3 29 29 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47404 * 299.99702 * 1 2 3 31 31 H 0.96991 * 119.99989 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.92509 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.84887 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.92895 * 180.29071 * 8 7 6 35 35 H 0.97003 * 119.99778 * 359.97438 * 12 10 9 36 36 H 1.08998 * 109.47366 * 296.10172 * 14 13 12 37 37 H 1.09006 * 109.46883 * 56.09371 * 14 13 12 38 38 H 1.08999 * 109.47315 * 176.09315 * 14 13 12 39 39 H 1.09002 * 110.72219 * 159.06416 * 15 13 12 40 40 H 1.09003 * 110.71618 * 35.97029 * 15 13 12 41 41 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 42 42 H 1.09004 * 109.87910 * 218.29695 * 16 15 13 43 43 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 45 45 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 46 46 H 1.08000 * 120.14929 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3175 -0.0417 0.0017 7 6 5.6981 -0.0433 0.0027 8 6 6.3962 1.1482 -0.0029 9 6 5.7087 2.3639 0.0019 10 6 6.4579 3.6388 0.0021 11 8 5.8582 4.6960 0.0012 12 7 7.8056 3.6284 0.0032 13 6 8.5477 4.8915 0.0029 14 6 8.1382 5.7654 -1.1843 15 6 10.0783 4.6372 0.0050 16 6 10.3893 4.3873 1.4957 17 7 9.3090 5.0070 2.2769 18 6 9.2013 4.9919 3.6420 19 1 8.3660 5.4788 4.1231 20 6 10.1658 4.3508 4.4073 21 7 11.1835 3.7569 3.8208 22 14 10.0185 4.3296 6.2693 23 1 9.2453 3.1340 6.6911 24 1 11.3745 4.2803 6.8726 25 1 9.3186 5.5576 6.7245 26 6 8.3611 5.6480 1.3473 27 6 4.3154 2.3728 0.0011 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.7775 -0.9770 0.0017 33 1 6.2345 -0.9807 0.0031 34 1 7.4762 1.1399 -0.0068 35 1 8.2841 2.7847 0.0042 36 1 8.4102 5.2659 -2.1141 37 1 7.0606 5.9280 -1.1611 38 1 8.6517 6.7249 -1.1234 39 1 10.6153 5.5130 -0.3595 40 1 10.3242 3.7594 -0.5927 41 1 10.4220 3.3159 1.6931 42 1 11.3443 4.8437 1.7567 43 1 11.8577 3.3093 4.3555 44 1 7.3392 5.5328 1.7083 45 1 8.6034 6.7039 1.2268 46 1 3.7790 3.3101 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046846140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:21 Heat of formation + Delta-G solvation = -37.726482 kcal Electronic energy + Delta-G solvation = -28384.198380 eV Core-core repulsion = 24466.564754 eV Total energy + Delta-G solvation = -3917.633626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70149 -40.97266 -39.46609 -38.48189 -35.82082 -35.72421 -33.96496 -32.64522 -32.14776 -31.34446 -30.30411 -27.93875 -27.52896 -25.69534 -25.09550 -24.16505 -22.47318 -22.05843 -21.42285 -20.47654 -19.75497 -18.84654 -17.74438 -17.31705 -17.18753 -16.87784 -16.65822 -16.38127 -16.08154 -15.90715 -15.59607 -15.36596 -15.08334 -14.80657 -14.63860 -14.25543 -14.11248 -13.88296 -13.60835 -13.51869 -13.32308 -13.21825 -13.08893 -12.86288 -12.83684 -12.75179 -12.45731 -12.13600 -12.04202 -11.97946 -11.71603 -11.59001 -11.24254 -10.74367 -10.69651 -10.38583 -10.19090 -10.02447 -9.94035 -8.87053 -7.86660 -5.20203 -0.40916 -0.02661 1.43350 1.44222 1.52170 1.53433 1.98406 2.06223 2.25223 2.47448 2.84539 3.31131 3.49250 3.58825 3.64646 3.74104 3.81088 4.01378 4.02590 4.08710 4.18046 4.32209 4.41618 4.60239 4.60716 4.63945 4.69075 4.76470 4.84717 4.86706 4.91326 4.94477 5.00603 5.07349 5.13394 5.19597 5.24057 5.31910 5.37424 5.41712 5.61436 5.67677 5.72575 5.77196 6.19479 6.44188 6.58115 7.11503 7.11614 7.22799 7.76059 8.40631 9.23016 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003146 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.966334 B = 8897.672018 C = 9896.737991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.553 3.447 4 O -0.585 6.585 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.119 4.119 8 C -0.056 4.056 9 C -0.154 4.154 10 C 0.553 3.447 11 O -0.573 6.573 12 N -0.689 5.689 13 C 0.167 3.833 14 C -0.144 4.144 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.129 3.871 27 C -0.026 4.026 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.421 0.579 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.150 0.850 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.023 0.977 42 H 0.010 0.990 43 H 0.249 0.751 44 H 0.021 0.979 45 H 0.025 0.975 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 -16.254 -13.902 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.341 3.659 4 O -0.466 6.466 5 C -0.162 4.162 6 C -0.063 4.063 7 C -0.137 4.137 8 C -0.075 4.075 9 C -0.157 4.157 10 C 0.341 3.659 11 O -0.454 6.454 12 N -0.340 5.340 13 C 0.080 3.920 14 C -0.203 4.203 15 C -0.166 4.166 16 C 0.060 3.940 17 N -0.346 5.346 18 C -0.373 4.373 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.591 5.591 22 Si 0.801 3.199 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.204 1.204 26 C 0.002 3.998 27 C -0.047 4.047 28 H 0.070 0.930 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.259 0.741 32 H 0.195 0.805 33 H 0.198 0.802 34 H 0.167 0.833 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.043 0.957 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.901 -14.857 -13.727 23.991 hybrid contribution 0.403 0.030 1.503 1.557 sum -12.497 -14.827 -12.224 22.922 Atomic orbital electron populations 1.21753 0.78051 1.04782 1.01547 1.45574 1.08651 1.08002 1.74254 1.18500 0.87527 0.84174 0.75677 1.90783 1.70790 1.33290 1.51775 1.19852 0.92618 0.94671 1.09013 1.21917 0.94990 0.96943 0.92438 1.21558 0.93901 0.98999 0.99217 1.21894 1.01464 0.91280 0.92850 1.19879 0.93685 0.93698 1.08478 1.18572 0.82491 0.89112 0.75683 1.90702 1.69544 1.33540 1.51622 1.45648 1.05261 1.09622 1.73475 1.21456 0.91884 0.84245 0.94439 1.21962 1.02671 0.99451 0.96190 1.23114 0.92443 1.03855 0.97167 1.20976 0.89843 0.95864 0.87312 1.44667 1.25230 1.63311 1.01412 1.19284 1.06606 1.29355 0.82017 0.91758 1.25479 0.97009 1.00417 1.02009 1.70126 1.13619 1.40966 1.34431 0.85177 0.76627 0.77772 0.80341 1.21161 1.21395 1.20382 1.22064 0.92534 0.94845 0.90321 1.21185 0.92877 0.98399 0.92209 0.92998 0.86155 0.93341 0.74096 0.80492 0.80189 0.83259 0.75401 0.90326 0.92275 0.90720 0.88963 0.88035 0.95925 0.97165 0.94183 0.96108 0.95688 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.70 127.77 1.37 2.29 16 2 N -0.71 -9.63 5.66 -487.44 -2.76 -12.39 16 3 C 0.55 13.49 7.77 86.79 0.67 14.16 16 4 O -0.59 -20.42 16.34 -3.87 -0.06 -20.48 16 5 C -0.16 -3.61 5.87 -20.12 -0.12 -3.73 16 6 C -0.04 -0.57 9.54 22.58 0.22 -0.36 16 7 C -0.12 -1.53 10.02 22.19 0.22 -1.31 16 8 C -0.06 -1.12 9.54 22.58 0.22 -0.91 16 9 C -0.15 -4.50 5.87 -20.12 -0.12 -4.62 16 10 C 0.55 19.80 7.15 86.79 0.62 20.42 16 11 O -0.57 -24.83 13.19 -3.87 -0.05 -24.88 16 12 N -0.69 -22.45 5.13 -418.71 -2.15 -24.60 16 13 C 0.17 5.86 0.83 5.17 0.00 5.87 16 14 C -0.14 -4.37 8.61 71.98 0.62 -3.75 16 15 C -0.13 -4.23 5.96 31.78 0.19 -4.05 16 16 C 0.18 8.69 5.36 86.73 0.47 9.15 16 17 N -0.62 -32.71 3.40 -691.01 -2.35 -35.05 16 18 C -0.24 -14.27 10.28 84.03 0.86 -13.40 16 19 H 0.06 3.80 7.83 -2.91 -0.02 3.77 16 20 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 21 N -0.94 -55.36 10.31 21.65 0.22 -55.14 16 22 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 26 C 0.13 5.92 6.19 87.02 0.54 6.46 16 27 C -0.03 -0.81 9.14 22.79 0.21 -0.60 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.42 2.07 6.85 -92.72 -0.64 1.43 16 32 H 0.18 0.47 6.39 -2.91 -0.02 0.45 16 33 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.15 2.45 6.39 -2.91 -0.02 2.43 16 35 H 0.41 11.12 6.54 -92.71 -0.61 10.51 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.08 5.92 -2.38 -0.01 2.06 16 38 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 39 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 40 H 0.10 2.66 8.09 -2.39 -0.02 2.64 16 41 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 42 H 0.01 0.54 7.51 -2.38 -0.02 0.52 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.02 1.06 6.89 -2.39 -0.02 1.04 16 45 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 46 H 0.11 4.17 7.23 -2.91 -0.02 4.15 16 Total: -1.00 -86.12 373.29 1.10 -85.02 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.22 Total: 15.95 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 6.43 Total: 22.90 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -7.03 Total: -127.19 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.11 Total: -45.37 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -86.12 1.10 -85.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046846140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.291 kcal (2) G-P(sol) polarization free energy of solvation -86.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds