Wall clock time and date at job start Tue Mar 31 2020 16:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38359 * 119.40856 * 2 1 4 4 C 1.38336 * 119.46284 * 179.70239 * 3 2 1 5 5 C 1.39987 * 118.34454 * 0.57372 * 4 3 2 6 6 C 1.47526 * 120.59593 * 179.71693 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.45266 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.72267 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.32327 * 35.00494 * 9 8 6 11 11 C 1.53032 * 109.32245 * 154.64335 * 9 8 6 12 12 C 1.53968 * 108.82424 * 175.67977 * 11 9 8 13 13 H 1.09001 * 112.99458 * 168.09410 * 12 11 9 14 14 C 1.55426 * 106.41536 * 293.81914 * 12 11 9 15 15 C 1.55179 * 100.35046 * 73.38161 * 14 12 11 16 16 H 1.09003 * 112.48179 * 162.67221 * 15 14 12 17 17 C 1.52985 * 109.32741 * 275.36240 * 9 8 6 18 18 N 1.47782 * 104.25367 * 40.55003 * 15 14 12 19 19 C 1.36938 * 125.85449 * 153.55345 * 18 15 14 20 20 H 1.08006 * 120.00143 * 359.97438 * 19 18 15 21 21 C 1.38815 * 120.00187 * 179.97438 * 19 18 15 22 22 N 1.31613 * 119.99772 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00291 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47033 * 60.00355 * 23 21 19 25 25 H 1.48492 * 109.47374 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47215 * 300.00528 * 23 21 19 27 27 C 1.47079 * 108.28811 * 333.53424 * 18 15 14 28 28 C 1.40286 * 118.80692 * 359.44637 * 5 4 3 29 29 O 1.35426 * 119.80023 * 180.29052 * 28 5 4 30 30 N 1.31880 * 119.41115 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46937 * 269.98161 * 1 2 3 32 32 H 1.08998 * 109.46880 * 29.97932 * 1 2 3 33 33 H 1.08998 * 109.46706 * 149.98539 * 1 2 3 34 34 H 1.08005 * 120.27133 * 359.96901 * 3 2 1 35 35 H 1.07998 * 120.82948 * 180.32206 * 4 3 2 36 36 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.57998 * 295.48934 * 11 9 8 38 38 H 1.09007 * 109.57491 * 55.74721 * 11 9 8 39 39 H 1.09002 * 111.23864 * 191.15612 * 14 12 11 40 40 H 1.09002 * 111.24092 * 315.60383 * 14 12 11 41 41 H 1.09005 * 109.52938 * 304.53047 * 17 9 8 42 42 H 1.08996 * 109.53444 * 64.75229 * 17 9 8 43 43 H 0.96997 * 120.00379 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.97466 * 241.74771 * 27 18 15 45 45 H 1.08994 * 109.97545 * 120.46963 * 27 18 15 46 46 H 0.96702 * 113.99831 * 89.99893 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0063 5 6 4.2355 -0.0247 0.0001 6 6 5.7097 -0.0813 0.0000 7 8 6.2769 -1.1568 0.0047 8 7 6.4278 1.0593 0.0003 9 6 7.8918 1.0031 0.0009 10 1 8.2201 0.1474 -0.5891 11 6 8.4480 2.2878 -0.6173 12 6 9.9840 2.2650 -0.5124 13 1 10.4631 3.0409 -1.1096 14 6 10.3218 2.3379 1.0029 15 6 9.9296 0.9032 1.4453 16 1 10.3600 0.6319 2.4093 17 6 8.3921 0.8488 1.4384 18 7 10.4127 0.0392 0.3481 19 6 10.7683 -1.2783 0.4618 20 1 10.7072 -1.7734 1.4198 21 6 11.2074 -1.9776 -0.6540 22 7 11.2824 -1.3742 -1.8213 23 14 11.6932 -3.7746 -0.4988 24 1 10.5300 -4.5620 -0.0169 25 1 12.1236 -4.2874 -1.8242 26 1 12.8127 -3.9030 0.4685 27 6 10.4457 0.8369 -0.8872 28 6 3.4758 -1.2041 -0.0003 29 8 4.0992 -2.4063 -0.0003 30 7 2.1546 -1.1488 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5141 34 1 1.6411 2.1376 -0.0005 35 1 4.1223 2.1345 0.0116 36 1 5.9754 1.9173 0.0010 37 1 8.1542 2.3458 -1.6654 38 1 8.0560 3.1512 -0.0798 39 1 11.3841 2.5236 1.1621 40 1 9.7123 3.0873 1.5078 41 1 7.9936 1.6572 2.0516 42 1 8.0621 -0.1100 1.8382 43 1 11.5895 -1.8626 -2.6010 44 1 9.7680 0.4081 -1.6255 45 1 11.4601 0.8657 -1.2848 46 1 4.2800 -2.7556 0.8832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047155203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:51 Heat of formation + Delta-G solvation = -4.326867 kcal Electronic energy + Delta-G solvation = -29224.024285 eV Core-core repulsion = 25307.838975 eV Total energy + Delta-G solvation = -3916.185310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97126 -39.85598 -38.36594 -37.21760 -34.53482 -33.42206 -32.63278 -31.81068 -30.66180 -29.69451 -28.52634 -27.65182 -25.27927 -23.68320 -23.27425 -23.08590 -21.74444 -20.24703 -19.43740 -18.93082 -18.59015 -17.49545 -17.11081 -16.77846 -15.89039 -15.62542 -15.05157 -14.67125 -14.53824 -14.33769 -14.10574 -13.99116 -13.59062 -13.36783 -13.03091 -12.73611 -12.71865 -12.53363 -12.30371 -11.98186 -11.80794 -11.74785 -11.64394 -11.54319 -11.20196 -10.69091 -10.62696 -10.52991 -10.15070 -10.02959 -9.95605 -9.79138 -9.72294 -9.62184 -9.36983 -9.24618 -9.00509 -8.56463 -8.49225 -6.74372 -5.60059 -2.92434 0.43634 0.87763 2.91360 3.26258 3.45945 3.50683 3.55434 3.56897 3.71158 4.28278 4.37683 4.59277 4.61081 4.75612 5.05674 5.12549 5.21681 5.24134 5.24599 5.28711 5.44468 5.58592 5.61474 5.65959 5.66814 5.76016 5.89674 5.90141 6.04905 6.08323 6.09323 6.13561 6.19894 6.23692 6.57802 6.62978 6.69272 6.87539 6.89756 6.99506 7.08293 7.45188 7.64210 7.66173 7.69313 7.80970 7.91459 8.34946 8.53972 9.32575 9.93112 10.58631 11.51910 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.003623 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.377848 B = 7725.914128 C = 9139.211875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.194 4.194 4 C -0.028 4.028 5 C -0.204 4.204 6 C 0.552 3.448 7 O -0.499 6.499 8 N -0.723 5.723 9 C 0.148 3.852 10 H 0.117 0.883 11 C -0.112 4.112 12 C -0.119 4.119 13 H 0.082 0.918 14 C -0.128 4.128 15 C 0.157 3.843 16 H 0.065 0.935 17 C -0.135 4.135 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.909 3.091 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.180 3.820 28 C 0.375 3.625 29 O -0.457 6.457 30 N -0.510 5.510 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.387 0.613 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.251 0.749 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.592 11.935 5.251 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.214 4.214 4 C -0.054 4.054 5 C -0.210 4.210 6 C 0.336 3.664 7 O -0.373 6.373 8 N -0.375 5.375 9 C 0.045 3.955 10 H 0.135 0.865 11 C -0.150 4.150 12 C -0.138 4.138 13 H 0.100 0.900 14 C -0.167 4.167 15 C 0.049 3.951 16 H 0.083 0.917 17 C -0.176 4.176 18 N -0.319 5.319 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.571 5.571 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.055 3.945 28 C 0.195 3.805 29 O -0.265 6.265 30 N -0.231 5.231 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.220 0.780 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -18.484 10.149 4.481 21.558 hybrid contribution 0.457 0.163 0.443 0.657 sum -18.026 10.313 4.924 21.344 Atomic orbital electron populations 1.20813 0.88271 1.03932 1.03479 1.21251 0.97017 0.87297 0.91392 1.21868 0.94487 0.99496 1.05542 1.21719 0.94476 0.97081 0.92127 1.21326 0.95659 0.94288 1.09768 1.17795 0.85520 0.85017 0.78049 1.90931 1.71236 1.28077 1.47068 1.46126 1.08285 1.07471 1.75582 1.21230 0.75844 1.00396 0.98051 0.86522 1.21968 0.96848 0.96134 1.00041 1.22834 0.93698 1.00825 0.96476 0.89977 1.22989 1.00429 0.97354 0.95882 1.21496 0.90863 0.89735 0.93046 0.91671 1.22596 0.99292 1.00363 0.95347 1.44591 1.76522 1.07564 1.03211 1.18952 1.36573 0.84652 0.94845 0.90681 1.24726 1.01774 0.98108 0.95558 1.69920 1.53044 1.35165 0.98972 0.86236 0.78227 0.85084 0.76478 1.21100 1.21734 1.21386 1.21313 0.99848 0.84535 0.88791 1.19186 0.85948 0.85404 0.89996 1.84741 1.76258 1.31672 1.33812 1.67141 1.09501 1.30408 1.16025 0.89890 0.90207 0.90094 0.83919 0.84031 0.77959 0.92172 0.92855 0.91872 0.92277 0.93868 0.92293 0.93867 0.93575 0.93755 0.73333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.00 0.37 -0.31 16 2 C 0.17 1.69 6.78 -82.53 -0.56 1.13 16 3 C -0.19 -1.61 9.71 -39.50 -0.38 -2.00 16 4 C -0.03 -0.27 9.64 -38.89 -0.37 -0.65 16 5 C -0.20 -2.84 5.90 -104.69 -0.62 -3.46 16 6 C 0.55 9.53 7.73 -12.47 -0.10 9.44 16 7 O -0.50 -11.14 14.85 -16.49 -0.24 -11.38 16 8 N -0.72 -10.87 5.02 -54.84 -0.28 -11.14 16 9 C 0.15 2.69 2.08 -67.92 -0.14 2.55 16 10 H 0.12 2.84 5.38 -51.93 -0.28 2.56 16 11 C -0.11 -1.74 4.95 -26.21 -0.13 -1.87 16 12 C -0.12 -2.10 4.33 -87.93 -0.38 -2.48 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.13 -2.16 6.18 -24.29 -0.15 -2.31 16 15 C 0.16 3.17 4.30 -65.63 -0.28 2.89 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -2.49 5.27 -26.30 -0.14 -2.62 16 18 N -0.59 -14.92 2.43 -161.39 -0.39 -15.31 16 19 C -0.22 -6.30 10.29 -15.06 -0.16 -6.46 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -27.77 10.35 55.49 0.57 -27.19 16 23 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 24 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.18 4.28 4.10 -2.83 -0.01 4.27 16 28 C 0.37 5.60 7.77 -16.61 -0.13 5.47 16 29 O -0.46 -7.34 11.66 -39.74 -0.46 -7.80 16 30 N -0.51 -6.85 10.28 -9.21 -0.09 -6.94 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.14 0.95 6.52 -52.49 -0.34 0.61 16 36 H 0.39 4.23 6.70 -40.82 -0.27 3.96 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 41 H 0.04 0.67 7.99 -51.93 -0.42 0.26 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 1.24 6.15 -51.93 -0.32 0.92 16 45 H 0.04 1.19 7.40 -51.93 -0.38 0.80 16 46 H 0.41 4.88 9.06 45.56 0.41 5.29 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -36.15 364.32 -9.47 -45.63 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.76 Total: 7.09 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.28 Total: 3.32 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.19 Total: -60.59 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.71 Total: -19.19 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.15 -9.47 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047155203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.302 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds