Wall clock time and date at job start Tue Mar 31 2020 16:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38359 * 119.40856 * 2 1 4 4 C 1.38336 * 119.46284 * 179.70239 * 3 2 1 5 5 C 1.39987 * 118.34454 * 0.57372 * 4 3 2 6 6 C 1.47526 * 120.59593 * 179.71693 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.45266 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.72267 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.32327 * 35.00494 * 9 8 6 11 11 C 1.53032 * 109.32245 * 154.64335 * 9 8 6 12 12 C 1.53968 * 108.82424 * 175.67977 * 11 9 8 13 13 H 1.09001 * 112.99458 * 168.09410 * 12 11 9 14 14 C 1.55426 * 106.41536 * 293.81914 * 12 11 9 15 15 C 1.55179 * 100.35046 * 73.38161 * 14 12 11 16 16 H 1.09003 * 112.48179 * 162.67221 * 15 14 12 17 17 C 1.52985 * 109.32741 * 275.36240 * 9 8 6 18 18 N 1.47782 * 104.25367 * 40.55003 * 15 14 12 19 19 C 1.36938 * 125.85449 * 153.55345 * 18 15 14 20 20 H 1.08006 * 120.00143 * 359.97438 * 19 18 15 21 21 C 1.38815 * 120.00187 * 179.97438 * 19 18 15 22 22 N 1.31613 * 119.99772 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00291 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47033 * 60.00355 * 23 21 19 25 25 H 1.48492 * 109.47374 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47215 * 300.00528 * 23 21 19 27 27 C 1.47079 * 108.28811 * 333.53424 * 18 15 14 28 28 C 1.40286 * 118.80692 * 359.44637 * 5 4 3 29 29 O 1.35426 * 119.80023 * 180.29052 * 28 5 4 30 30 N 1.31880 * 119.41115 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46937 * 269.98161 * 1 2 3 32 32 H 1.08998 * 109.46880 * 29.97932 * 1 2 3 33 33 H 1.08998 * 109.46706 * 149.98539 * 1 2 3 34 34 H 1.08005 * 120.27133 * 359.96901 * 3 2 1 35 35 H 1.07998 * 120.82948 * 180.32206 * 4 3 2 36 36 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.57998 * 295.48934 * 11 9 8 38 38 H 1.09007 * 109.57491 * 55.74721 * 11 9 8 39 39 H 1.09002 * 111.23864 * 191.15612 * 14 12 11 40 40 H 1.09002 * 111.24092 * 315.60383 * 14 12 11 41 41 H 1.09005 * 109.52938 * 304.53047 * 17 9 8 42 42 H 1.08996 * 109.53444 * 64.75229 * 17 9 8 43 43 H 0.96997 * 120.00379 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.97466 * 241.74771 * 27 18 15 45 45 H 1.08994 * 109.97545 * 120.46963 * 27 18 15 46 46 H 0.96702 * 113.99831 * 89.99893 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0063 5 6 4.2355 -0.0247 0.0001 6 6 5.7097 -0.0813 0.0000 7 8 6.2769 -1.1568 0.0047 8 7 6.4278 1.0593 0.0003 9 6 7.8918 1.0031 0.0009 10 1 8.2201 0.1474 -0.5891 11 6 8.4480 2.2878 -0.6173 12 6 9.9840 2.2650 -0.5124 13 1 10.4631 3.0409 -1.1096 14 6 10.3218 2.3379 1.0029 15 6 9.9296 0.9032 1.4453 16 1 10.3600 0.6319 2.4093 17 6 8.3921 0.8488 1.4384 18 7 10.4127 0.0392 0.3481 19 6 10.7683 -1.2783 0.4618 20 1 10.7072 -1.7734 1.4198 21 6 11.2074 -1.9776 -0.6540 22 7 11.2824 -1.3742 -1.8213 23 14 11.6932 -3.7746 -0.4988 24 1 10.5300 -4.5620 -0.0169 25 1 12.1236 -4.2874 -1.8242 26 1 12.8127 -3.9030 0.4685 27 6 10.4457 0.8369 -0.8872 28 6 3.4758 -1.2041 -0.0003 29 8 4.0992 -2.4063 -0.0003 30 7 2.1546 -1.1488 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5141 34 1 1.6411 2.1376 -0.0005 35 1 4.1223 2.1345 0.0116 36 1 5.9754 1.9173 0.0010 37 1 8.1542 2.3458 -1.6654 38 1 8.0560 3.1512 -0.0798 39 1 11.3841 2.5236 1.1621 40 1 9.7123 3.0873 1.5078 41 1 7.9936 1.6572 2.0516 42 1 8.0621 -0.1100 1.8382 43 1 11.5895 -1.8626 -2.6010 44 1 9.7680 0.4081 -1.6255 45 1 11.4601 0.8657 -1.2848 46 1 4.2800 -2.7556 0.8832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047155203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:50 Heat of formation + Delta-G solvation = -33.052158 kcal Electronic energy + Delta-G solvation = -29225.269907 eV Core-core repulsion = 25307.838975 eV Total energy + Delta-G solvation = -3917.430932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02174 -41.25263 -39.73728 -38.28841 -36.09903 -34.85508 -34.04837 -32.62152 -32.34135 -31.28249 -29.99245 -28.59926 -27.19760 -24.94194 -24.70637 -24.07053 -22.98177 -21.60098 -21.19531 -20.31569 -19.70235 -18.97846 -18.58512 -18.03409 -17.05821 -16.87260 -16.63619 -16.26332 -15.85725 -15.59728 -15.31646 -15.28207 -14.86315 -14.63624 -14.16412 -14.12199 -13.77951 -13.62077 -13.44971 -13.36456 -13.22950 -13.12234 -12.98955 -12.97272 -12.65135 -12.62144 -12.52759 -12.16187 -11.90602 -11.63627 -11.42102 -11.16394 -11.07775 -11.02759 -10.92229 -10.67332 -10.44816 -10.07070 -9.78856 -8.81956 -7.82959 -5.14137 -0.48659 0.06847 1.37587 1.43437 1.47389 1.82591 2.07903 2.46333 2.48886 2.72491 3.35577 3.47630 3.65625 3.68457 3.71010 3.83904 3.91741 3.96098 4.12586 4.30463 4.40745 4.41297 4.44465 4.53970 4.60796 4.67485 4.70155 4.81087 4.81376 4.85351 4.90509 5.03131 5.11296 5.14289 5.21924 5.30980 5.35894 5.40796 5.49887 5.51178 5.52013 5.66565 5.75788 5.85844 6.24153 6.46283 6.60768 6.81994 7.14926 7.31534 7.84202 8.47561 9.26836 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.003623 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.377848 B = 7725.914128 C = 9139.211875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.175 4.175 4 C -0.016 4.016 5 C -0.226 4.226 6 C 0.548 3.452 7 O -0.567 6.567 8 N -0.703 5.703 9 C 0.154 3.846 10 H 0.044 0.956 11 C -0.101 4.101 12 C -0.106 4.106 13 H 0.111 0.889 14 C -0.109 4.109 15 C 0.139 3.861 16 H 0.063 0.937 17 C -0.122 4.122 18 N -0.614 5.614 19 C -0.228 4.228 20 H 0.071 0.929 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.966 3.034 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.271 1.271 27 C 0.188 3.812 28 C 0.346 3.654 29 O -0.487 6.487 30 N -0.538 5.538 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.413 0.587 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.017 0.983 43 H 0.242 0.758 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 16.946 6.704 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.194 4.194 4 C -0.041 4.041 5 C -0.233 4.233 6 C 0.335 3.665 7 O -0.446 6.446 8 N -0.355 5.355 9 C 0.050 3.950 10 H 0.062 0.938 11 C -0.139 4.139 12 C -0.126 4.126 13 H 0.129 0.871 14 C -0.147 4.147 15 C 0.033 3.967 16 H 0.081 0.919 17 C -0.162 4.162 18 N -0.338 5.338 19 C -0.357 4.357 20 H 0.089 0.911 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.795 3.205 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.197 1.197 27 C 0.063 3.937 28 C 0.167 3.833 29 O -0.296 6.296 30 N -0.259 5.259 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.211 0.789 35 H 0.198 0.802 36 H 0.251 0.749 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -21.293 15.240 5.977 26.858 hybrid contribution 1.152 -1.380 0.045 1.798 sum -20.141 13.860 6.022 25.180 Atomic orbital electron populations 1.20969 0.85498 1.05041 1.04792 1.22108 0.98877 0.87126 0.89578 1.22398 0.93852 1.00658 1.02455 1.22151 0.95431 0.96421 0.90143 1.21079 0.93315 0.95987 1.12928 1.18387 0.87112 0.84460 0.76551 1.90899 1.72858 1.30629 1.50244 1.45797 1.06953 1.08234 1.74545 1.20851 0.77695 0.99540 0.96936 0.93763 1.21917 0.94874 0.96116 1.00946 1.22792 0.95497 0.96698 0.97597 0.87119 1.22946 1.01421 0.95529 0.94842 1.21876 0.91896 0.91379 0.91592 0.91908 1.22419 0.97848 0.99944 0.96023 1.44826 1.76398 1.07169 1.05426 1.19269 1.35083 0.86833 0.94536 0.91114 1.25478 1.03110 1.01805 0.95583 1.70150 1.54509 1.36012 0.99211 0.85334 0.77928 0.80818 0.76437 1.21737 1.21929 1.19711 1.21059 0.96467 0.88501 0.87713 1.19433 0.86857 0.85192 0.91854 1.84684 1.76919 1.33121 1.34891 1.67161 1.08749 1.32681 1.17281 0.88270 0.86894 0.91207 0.78864 0.80181 0.74862 0.91837 0.87191 0.91988 0.87163 0.89079 0.96426 0.94866 0.98047 0.98085 0.72633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.16 71.24 0.72 -0.22 16 2 C 0.16 2.76 6.78 42.58 0.29 3.05 16 3 C -0.17 -2.02 9.71 22.32 0.22 -1.81 16 4 C -0.02 -0.25 9.64 22.72 0.22 -0.03 16 5 C -0.23 -6.24 5.90 -19.91 -0.12 -6.36 16 6 C 0.55 19.54 7.73 86.69 0.67 20.21 16 7 O -0.57 -27.69 14.85 16.79 0.25 -27.44 16 8 N -0.70 -20.05 5.02 -445.67 -2.24 -22.29 16 9 C 0.15 5.56 2.08 45.00 0.09 5.65 16 10 H 0.04 2.30 5.38 -2.39 -0.01 2.29 16 11 C -0.10 -2.78 4.95 30.93 0.15 -2.62 16 12 C -0.11 -3.51 4.33 -9.05 -0.04 -3.55 16 13 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 14 C -0.11 -3.27 6.18 32.18 0.20 -3.07 16 15 C 0.14 5.54 4.30 45.78 0.20 5.73 16 16 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 17 C -0.12 -4.36 5.27 30.88 0.16 -4.20 16 18 N -0.61 -32.26 2.43 -664.53 -1.61 -33.87 16 19 C -0.23 -13.71 10.29 84.03 0.87 -12.85 16 20 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 22 N -0.95 -61.18 10.35 21.65 0.22 -60.96 16 23 Si 0.97 50.61 29.55 68.60 2.03 52.64 16 24 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 25 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 26 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 27 C 0.19 9.37 4.10 86.85 0.36 9.72 16 28 C 0.35 10.80 7.77 85.13 0.66 11.46 16 29 O -0.49 -17.43 11.66 -66.40 -0.77 -18.21 16 30 N -0.54 -14.37 10.28 -296.06 -3.04 -17.42 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.29 8.07 -2.39 -0.02 0.27 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.18 1.28 6.52 -2.91 -0.02 1.26 16 36 H 0.41 7.17 6.70 -92.71 -0.62 6.55 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 1.92 7.98 -2.38 -0.02 1.90 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 2.28 7.74 -2.39 -0.02 2.26 16 41 H 0.09 2.40 7.99 -2.38 -0.02 2.39 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.24 15.35 8.31 -92.71 -0.77 14.57 16 44 H 0.00 0.08 6.15 -2.38 -0.01 0.07 16 45 H 0.00 0.05 7.40 -2.39 -0.02 0.03 16 46 H 0.41 11.77 9.06 -74.06 -0.67 11.09 16 Total: -1.00 -93.25 364.32 -0.32 -93.57 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.26 Total: 16.54 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 5.11 Total: 17.44 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.67 Total: -134.54 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.52 Total: -45.65 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.03 Total: 52.64 kcal Total: -93.25 -0.32 -93.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047155203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.518 kcal (2) G-P(sol) polarization free energy of solvation -93.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds