Wall clock time and date at job start Tue Mar 31 2020 16:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38354 * 119.40480 * 2 1 4 4 C 1.38343 * 119.45334 * 179.70059 * 3 2 1 5 5 C 1.39985 * 118.35034 * 0.55202 * 4 3 2 6 6 C 1.47523 * 120.59523 * 179.76279 * 5 4 3 7 7 O 1.21597 * 119.99837 * 185.88808 * 6 5 4 8 8 N 1.34775 * 120.00305 * 5.89023 * 6 5 4 9 9 C 1.46502 * 120.00124 * 184.95712 * 8 6 5 10 10 H 1.08999 * 109.17511 * 50.84835 * 9 8 6 11 11 C 1.53026 * 109.32875 * 291.29264 * 9 8 6 12 12 C 1.53975 * 108.82830 * 295.14333 * 11 9 8 13 13 H 1.08998 * 112.99570 * 168.09422 * 12 11 9 14 14 C 1.55428 * 106.41221 * 293.82113 * 12 11 9 15 15 C 1.55455 * 100.23590 * 73.19673 * 14 12 11 16 16 H 1.08995 * 113.04593 * 163.21299 * 15 14 12 17 17 C 1.52986 * 109.32272 * 170.39884 * 9 8 6 18 18 N 1.47785 * 104.11414 * 40.86187 * 15 14 12 19 19 C 1.36944 * 125.85169 * 153.44458 * 18 15 14 20 20 H 1.08000 * 119.99673 * 43.68701 * 19 18 15 21 21 C 1.38810 * 119.99693 * 223.68529 * 19 18 15 22 22 N 1.31612 * 120.00180 * 18.57106 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 198.57272 * 21 19 18 24 24 H 1.48493 * 109.47282 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47083 * 300.00336 * 23 21 19 26 26 H 1.48498 * 109.47204 * 59.99740 * 23 21 19 27 27 C 1.47079 * 108.29131 * 333.18266 * 18 15 14 28 28 C 1.40272 * 118.80648 * 359.48791 * 5 4 3 29 29 O 1.35425 * 119.80342 * 180.24891 * 28 5 4 30 30 N 1.31881 * 119.40820 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47301 * 269.98712 * 1 2 3 32 32 H 1.09002 * 109.46743 * 29.98781 * 1 2 3 33 33 H 1.08997 * 109.46853 * 149.97954 * 1 2 3 34 34 H 1.07996 * 120.27418 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.81979 * 180.29783 * 4 3 2 36 36 H 0.96997 * 119.99631 * 4.96210 * 8 6 5 37 37 H 1.08992 * 109.58069 * 175.33970 * 11 9 8 38 38 H 1.09001 * 109.68836 * 55.00358 * 11 9 8 39 39 H 1.08997 * 111.23639 * 191.14857 * 14 12 11 40 40 H 1.08998 * 111.23693 * 315.59898 * 14 12 11 41 41 H 1.09003 * 109.53257 * 185.06261 * 17 9 8 42 42 H 1.08992 * 109.53600 * 305.21761 * 17 9 8 43 43 H 0.96996 * 120.00399 * 0.46298 * 22 21 19 44 44 H 1.09010 * 109.97475 * 120.72106 * 27 18 15 45 45 H 1.09000 * 109.97629 * 241.99888 * 27 18 15 46 46 H 0.96698 * 113.99873 * 89.99997 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0063 5 6 4.2356 -0.0249 0.0006 6 6 5.7097 -0.0814 0.0017 7 8 6.2772 -1.1508 -0.1113 8 7 6.4275 1.0523 0.1279 9 6 7.8880 1.0105 0.0202 10 1 8.1647 0.4803 -0.8911 11 6 8.4642 0.2722 1.2304 12 6 8.1601 1.0873 2.5008 13 1 8.3540 0.5330 3.4190 14 6 8.9702 2.4082 2.3794 15 6 8.1395 3.1426 1.2898 16 1 8.3483 4.2113 1.2422 17 6 8.4322 2.4390 -0.0401 18 7 6.7358 2.8571 1.6533 19 6 5.6543 3.6420 1.3540 20 1 5.5557 4.0724 0.3684 21 6 4.6847 3.8842 2.3174 22 7 4.9574 3.6866 3.5897 23 14 2.9929 4.4905 1.8080 24 1 2.1476 4.6715 3.0154 25 1 3.1252 5.7881 1.0979 26 1 2.3611 3.4947 0.9056 27 6 6.6989 1.5824 2.3861 28 6 3.4759 -1.2041 -0.0002 29 8 4.0992 -2.4063 -0.0005 30 7 2.1546 -1.1489 -0.0005 31 1 -0.3634 -0.0002 1.0276 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6411 2.1375 -0.0004 35 1 4.1223 2.1345 0.0113 36 1 5.9771 1.8959 0.2901 37 1 9.5426 0.1660 1.1140 38 1 8.0066 -0.7138 1.3110 39 1 8.9698 2.9594 3.3198 40 1 9.9871 2.2176 2.0364 41 1 9.5085 2.4120 -0.2104 42 1 7.9480 2.9795 -0.8533 43 1 5.8380 3.3781 3.8548 44 1 6.2787 1.7364 3.3802 45 1 6.1010 0.8547 1.8375 46 1 4.2799 -2.7559 0.8828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047155204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:55 Heat of formation + Delta-G solvation = 31.236459 kcal Electronic energy + Delta-G solvation = -31157.249438 eV Core-core repulsion = 27242.606270 eV Total energy + Delta-G solvation = -3914.643168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11930 -40.10253 -37.83872 -36.84875 -34.04494 -33.54362 -32.49584 -31.37511 -30.85682 -30.53318 -28.28119 -27.24482 -25.35469 -23.32151 -23.19799 -22.67776 -21.70606 -20.11397 -19.78312 -18.93502 -18.35526 -17.75599 -17.04489 -16.52313 -15.68356 -15.48751 -15.03434 -14.50197 -14.45558 -14.06640 -13.93984 -13.80397 -13.48650 -13.16928 -12.89483 -12.70995 -12.37063 -12.31271 -12.11606 -12.02852 -11.94916 -11.82442 -11.73495 -11.51807 -11.35773 -11.07450 -10.78332 -10.64886 -10.24159 -10.10066 -9.85397 -9.67619 -9.58852 -9.57924 -9.41238 -8.96297 -8.63725 -8.53949 -7.73847 -6.95692 -6.22211 -3.80441 0.89291 1.42209 3.17837 3.28070 3.29255 3.45171 3.67563 3.90223 4.13882 4.28402 4.74391 4.99423 5.03617 5.05736 5.19103 5.19531 5.28386 5.33383 5.43184 5.59116 5.60290 5.63377 5.70260 5.76430 5.78557 5.80725 5.98139 6.01523 6.03790 6.16627 6.17225 6.29051 6.32914 6.41040 6.51929 6.52913 6.64271 6.70472 6.76675 6.81379 7.01621 7.07509 7.26106 7.75060 7.76490 8.06960 8.28904 8.43791 8.75189 8.96756 9.48014 10.18414 10.89384 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.006933 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.511704 B = 4037.404342 C = 5914.707477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.192 4.192 4 C -0.016 4.016 5 C -0.204 4.204 6 C 0.546 3.454 7 O -0.548 6.548 8 N -0.694 5.694 9 C 0.163 3.837 10 H 0.062 0.938 11 C -0.124 4.124 12 C -0.105 4.105 13 H 0.077 0.923 14 C -0.127 4.127 15 C 0.141 3.859 16 H 0.068 0.932 17 C -0.138 4.138 18 N -0.585 5.585 19 C -0.374 4.374 20 H 0.057 0.943 21 C -0.001 4.001 22 N -0.888 5.888 23 Si 1.049 2.951 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.106 3.894 28 C 0.363 3.637 29 O -0.461 6.461 30 N -0.516 5.516 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.433 0.567 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.277 0.723 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -3.352 -4.981 6.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.025 3.975 3 C -0.212 4.212 4 C -0.041 4.041 5 C -0.211 4.211 6 C 0.332 3.668 7 O -0.428 6.428 8 N -0.361 5.361 9 C 0.058 3.942 10 H 0.080 0.920 11 C -0.163 4.163 12 C -0.124 4.124 13 H 0.095 0.905 14 C -0.165 4.165 15 C 0.034 3.966 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.312 5.312 19 C -0.501 4.501 20 H 0.074 0.926 21 C -0.209 4.209 22 N -0.523 5.523 23 Si 0.878 3.122 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.197 1.197 27 C -0.019 4.019 28 C 0.183 3.817 29 O -0.268 6.268 30 N -0.236 5.236 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.289 0.711 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.825 -4.260 -5.097 7.218 hybrid contribution 2.028 0.769 0.203 2.179 sum -0.796 -3.491 -4.894 6.064 Atomic orbital electron populations 1.20777 0.88560 1.03513 1.03382 1.21190 0.96787 0.87367 0.92191 1.22184 0.94948 0.99563 1.04478 1.22263 0.94721 0.98283 0.88848 1.21195 0.95523 0.94159 1.10196 1.17896 0.86063 0.84981 0.77840 1.90711 1.71740 1.29332 1.51005 1.47615 1.07181 1.12603 1.68711 1.20625 0.80429 0.95959 0.97203 0.92017 1.22088 0.99769 0.99642 0.94785 1.22532 0.97247 0.95704 0.96871 0.90504 1.23008 0.97327 0.96670 0.99537 1.21757 0.87034 0.96494 0.91280 0.91371 1.22362 0.99640 0.95128 1.00677 1.44773 1.00897 1.19444 1.66100 1.19521 1.00773 1.32537 0.97285 0.92554 1.26295 1.04534 0.96702 0.93401 1.70736 1.25880 1.40078 1.15639 0.83889 0.75554 0.76694 0.76093 1.20798 1.21501 1.19687 1.22256 0.94001 0.88903 0.96725 1.19084 0.86104 0.84964 0.91595 1.84701 1.76576 1.32130 1.33367 1.67041 1.09380 1.30412 1.16770 0.90014 0.90340 0.90428 0.83433 0.82336 0.71117 0.92144 0.90753 0.92059 0.92109 0.91622 0.92073 0.91023 0.95139 0.92347 0.74225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.16 36.01 0.37 -0.78 16 2 C 0.16 2.50 6.78 -82.53 -0.56 1.94 16 3 C -0.19 -3.07 9.01 -39.50 -0.36 -3.43 16 4 C -0.02 -0.28 9.26 -38.89 -0.36 -0.64 16 5 C -0.20 -3.92 5.90 -104.69 -0.62 -4.54 16 6 C 0.55 11.05 5.98 -12.48 -0.07 10.97 16 7 O -0.55 -11.81 13.73 -16.40 -0.23 -12.03 16 8 N -0.69 -13.48 2.72 -54.84 -0.15 -13.63 16 9 C 0.16 2.88 2.74 -67.92 -0.19 2.69 16 10 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 11 C -0.12 -2.12 5.14 -26.21 -0.13 -2.25 16 12 C -0.10 -1.88 4.33 -87.92 -0.38 -2.26 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.16 6.20 -24.14 -0.15 -2.31 16 15 C 0.14 2.64 4.26 -65.78 -0.28 2.36 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.14 -2.27 5.41 -26.59 -0.14 -2.42 16 18 N -0.58 -12.63 1.31 -161.55 -0.21 -12.85 16 19 C -0.37 -8.76 6.80 -15.06 -0.10 -8.86 16 20 H 0.06 1.32 7.90 -52.49 -0.41 0.91 16 21 C 0.00 -0.02 5.28 -17.43 -0.09 -0.11 16 22 N -0.89 -24.15 13.14 55.49 0.73 -23.42 16 23 Si 1.05 21.22 29.30 -169.99 -4.98 16.24 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.29 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.27 -4.63 3.98 56.52 0.22 -4.41 16 27 C 0.11 2.27 5.09 -2.83 -0.01 2.26 16 28 C 0.36 6.72 7.76 -16.61 -0.13 6.59 16 29 O -0.46 -8.11 11.68 -39.65 -0.46 -8.57 16 30 N -0.52 -8.97 10.28 -9.21 -0.09 -9.07 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.15 2.06 6.24 -52.49 -0.33 1.74 16 35 H 0.16 3.03 4.63 -52.49 -0.24 2.78 16 36 H 0.43 8.80 2.37 -40.82 -0.10 8.70 16 37 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 38 H 0.07 1.39 6.57 -51.93 -0.34 1.04 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.89 7.75 -51.93 -0.40 0.48 16 41 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.28 7.72 6.18 -40.82 -0.25 7.47 16 44 H 0.03 0.75 5.98 -51.92 -0.31 0.44 16 45 H 0.06 1.31 3.93 -58.40 -0.23 1.08 16 46 H 0.40 5.39 9.06 45.56 0.41 5.80 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -29.35 342.07 -8.84 -38.19 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -5.38 Total: 20.78 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.22 Total: -0.81 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.27 Total: -58.96 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.69 Total: -20.60 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.98 Total: 16.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.35 -8.84 -38.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047155204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.429 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds