Wall clock time and date at job start Tue Mar 31 2020 16:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38354 * 119.40480 * 2 1 4 4 C 1.38343 * 119.45334 * 179.70059 * 3 2 1 5 5 C 1.39985 * 118.35034 * 0.55202 * 4 3 2 6 6 C 1.47523 * 120.59523 * 179.76279 * 5 4 3 7 7 O 1.21597 * 119.99837 * 185.88808 * 6 5 4 8 8 N 1.34775 * 120.00305 * 5.89023 * 6 5 4 9 9 C 1.46502 * 120.00124 * 184.95712 * 8 6 5 10 10 H 1.08999 * 109.17511 * 50.84835 * 9 8 6 11 11 C 1.53026 * 109.32875 * 291.29264 * 9 8 6 12 12 C 1.53975 * 108.82830 * 295.14333 * 11 9 8 13 13 H 1.08998 * 112.99570 * 168.09422 * 12 11 9 14 14 C 1.55428 * 106.41221 * 293.82113 * 12 11 9 15 15 C 1.55455 * 100.23590 * 73.19673 * 14 12 11 16 16 H 1.08995 * 113.04593 * 163.21299 * 15 14 12 17 17 C 1.52986 * 109.32272 * 170.39884 * 9 8 6 18 18 N 1.47785 * 104.11414 * 40.86187 * 15 14 12 19 19 C 1.36944 * 125.85169 * 153.44458 * 18 15 14 20 20 H 1.08000 * 119.99673 * 43.68701 * 19 18 15 21 21 C 1.38810 * 119.99693 * 223.68529 * 19 18 15 22 22 N 1.31612 * 120.00180 * 18.57106 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 198.57272 * 21 19 18 24 24 H 1.48493 * 109.47282 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47083 * 300.00336 * 23 21 19 26 26 H 1.48498 * 109.47204 * 59.99740 * 23 21 19 27 27 C 1.47079 * 108.29131 * 333.18266 * 18 15 14 28 28 C 1.40272 * 118.80648 * 359.48791 * 5 4 3 29 29 O 1.35425 * 119.80342 * 180.24891 * 28 5 4 30 30 N 1.31881 * 119.40820 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47301 * 269.98712 * 1 2 3 32 32 H 1.09002 * 109.46743 * 29.98781 * 1 2 3 33 33 H 1.08997 * 109.46853 * 149.97954 * 1 2 3 34 34 H 1.07996 * 120.27418 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.81979 * 180.29783 * 4 3 2 36 36 H 0.96997 * 119.99631 * 4.96210 * 8 6 5 37 37 H 1.08992 * 109.58069 * 175.33970 * 11 9 8 38 38 H 1.09001 * 109.68836 * 55.00358 * 11 9 8 39 39 H 1.08997 * 111.23639 * 191.14857 * 14 12 11 40 40 H 1.08998 * 111.23693 * 315.59898 * 14 12 11 41 41 H 1.09003 * 109.53257 * 185.06261 * 17 9 8 42 42 H 1.08992 * 109.53600 * 305.21761 * 17 9 8 43 43 H 0.96996 * 120.00399 * 0.46298 * 22 21 19 44 44 H 1.09010 * 109.97475 * 120.72106 * 27 18 15 45 45 H 1.09000 * 109.97629 * 241.99888 * 27 18 15 46 46 H 0.96698 * 113.99873 * 89.99997 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0063 5 6 4.2356 -0.0249 0.0006 6 6 5.7097 -0.0814 0.0017 7 8 6.2772 -1.1508 -0.1113 8 7 6.4275 1.0523 0.1279 9 6 7.8880 1.0105 0.0202 10 1 8.1647 0.4803 -0.8911 11 6 8.4642 0.2722 1.2304 12 6 8.1601 1.0873 2.5008 13 1 8.3540 0.5330 3.4190 14 6 8.9702 2.4082 2.3794 15 6 8.1395 3.1426 1.2898 16 1 8.3483 4.2113 1.2422 17 6 8.4322 2.4390 -0.0401 18 7 6.7358 2.8571 1.6533 19 6 5.6543 3.6420 1.3540 20 1 5.5557 4.0724 0.3684 21 6 4.6847 3.8842 2.3174 22 7 4.9574 3.6866 3.5897 23 14 2.9929 4.4905 1.8080 24 1 2.1476 4.6715 3.0154 25 1 3.1252 5.7881 1.0979 26 1 2.3611 3.4947 0.9056 27 6 6.6989 1.5824 2.3861 28 6 3.4759 -1.2041 -0.0002 29 8 4.0992 -2.4063 -0.0005 30 7 2.1546 -1.1489 -0.0005 31 1 -0.3634 -0.0002 1.0276 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6411 2.1375 -0.0004 35 1 4.1223 2.1345 0.0113 36 1 5.9771 1.8959 0.2901 37 1 9.5426 0.1660 1.1140 38 1 8.0066 -0.7138 1.3110 39 1 8.9698 2.9594 3.3198 40 1 9.9871 2.2176 2.0364 41 1 9.5085 2.4120 -0.2104 42 1 7.9480 2.9795 -0.8533 43 1 5.8380 3.3781 3.8548 44 1 6.2787 1.7364 3.3802 45 1 6.1010 0.8547 1.8375 46 1 4.2799 -2.7559 0.8828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047155204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:54 Heat of formation + Delta-G solvation = 12.333728 kcal Electronic energy + Delta-G solvation = -31158.069122 eV Core-core repulsion = 27242.606270 eV Total energy + Delta-G solvation = -3915.462852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60439 -41.46589 -39.34737 -38.19642 -35.75852 -35.03087 -33.88410 -32.60676 -32.42406 -32.09666 -29.71242 -28.52462 -27.05094 -24.84038 -24.64870 -23.99605 -23.10080 -21.63731 -21.37170 -20.43231 -19.72798 -19.37777 -18.57613 -17.89564 -17.16200 -16.83884 -16.60362 -16.04052 -15.81460 -15.66002 -15.40346 -15.19101 -14.81177 -14.73597 -14.21160 -14.03938 -13.82796 -13.60957 -13.51865 -13.45216 -13.24057 -13.17585 -12.95584 -12.95335 -12.64033 -12.58021 -12.35512 -12.22506 -11.87257 -11.65516 -11.40455 -11.15496 -11.14252 -10.96190 -10.87908 -10.44120 -10.37326 -9.87252 -9.26220 -8.81789 -8.07679 -5.69622 -0.44945 0.06995 1.56406 1.65534 1.82372 1.86563 2.32407 2.51138 2.62708 2.77808 3.24062 3.47975 3.56142 3.71514 3.74166 3.84534 3.88932 3.92071 3.99333 4.25302 4.29876 4.34102 4.39164 4.43933 4.52808 4.66838 4.72835 4.78871 4.80936 4.82130 4.98389 4.98735 5.03287 5.08023 5.08920 5.13635 5.15862 5.20854 5.39976 5.42539 5.44676 5.50523 5.79015 5.89516 6.37568 6.50490 6.77217 6.87663 6.95482 7.41618 7.65170 8.37370 8.96966 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.006933 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.511704 B = 4037.404342 C = 5914.707477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.167 3.833 3 C -0.193 4.193 4 C -0.026 4.026 5 C -0.230 4.230 6 C 0.542 3.458 7 O -0.569 6.569 8 N -0.696 5.696 9 C 0.154 3.846 10 H 0.066 0.934 11 C -0.114 4.114 12 C -0.101 4.101 13 H 0.085 0.915 14 C -0.115 4.115 15 C 0.131 3.869 16 H 0.061 0.939 17 C -0.125 4.125 18 N -0.595 5.595 19 C -0.362 4.362 20 H 0.057 0.943 21 C -0.046 4.046 22 N -0.927 5.927 23 Si 1.082 2.918 24 H -0.303 1.303 25 H -0.279 1.279 26 H -0.227 1.227 27 C 0.111 3.889 28 C 0.355 3.645 29 O -0.472 6.472 30 N -0.526 5.526 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.429 0.571 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.260 0.740 44 H -0.010 1.010 45 H 0.049 0.951 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -3.256 -6.504 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.029 3.971 3 C -0.213 4.213 4 C -0.051 4.051 5 C -0.237 4.237 6 C 0.329 3.671 7 O -0.451 6.451 8 N -0.361 5.361 9 C 0.050 3.950 10 H 0.084 0.916 11 C -0.152 4.152 12 C -0.120 4.120 13 H 0.103 0.897 14 C -0.153 4.153 15 C 0.025 3.975 16 H 0.079 0.921 17 C -0.165 4.165 18 N -0.322 5.322 19 C -0.490 4.490 20 H 0.075 0.925 21 C -0.248 4.248 22 N -0.565 5.565 23 Si 0.905 3.095 24 H -0.230 1.230 25 H -0.205 1.205 26 H -0.151 1.151 27 C -0.015 4.015 28 C 0.175 3.825 29 O -0.281 6.281 30 N -0.247 5.247 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.283 0.717 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.008 0.992 45 H 0.066 0.934 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.030 -4.171 -6.653 8.417 hybrid contribution 2.103 0.732 0.656 2.322 sum -0.926 -3.439 -5.997 6.975 Atomic orbital electron populations 1.20962 0.84975 1.05336 1.04807 1.21976 0.98960 0.86488 0.89670 1.22475 0.94022 1.00986 1.03779 1.22231 0.95861 0.97401 0.89643 1.21215 0.95144 0.95029 1.12282 1.18111 0.86690 0.84849 0.77453 1.90678 1.72283 1.29870 1.52278 1.47668 1.08097 1.12106 1.68253 1.20856 0.79563 0.96920 0.97689 0.91572 1.22009 1.01541 0.98102 0.93591 1.22528 0.94907 0.96550 0.98014 0.89718 1.22966 0.98761 0.95219 0.98381 1.21937 0.85570 0.96721 0.93249 0.92107 1.22259 1.01822 0.93655 0.98750 1.44888 1.02015 1.19477 1.65842 1.19683 1.01267 1.31124 0.96944 0.92517 1.27505 1.07798 0.96661 0.92822 1.70871 1.25010 1.43485 1.17178 0.83548 0.72170 0.77828 0.75906 1.22990 1.20486 1.15057 1.22162 0.96232 0.88812 0.94250 1.19215 0.86674 0.84938 0.91647 1.84641 1.76734 1.31960 1.34723 1.67181 1.08711 1.31455 1.17346 0.88513 0.87461 0.89736 0.80958 0.83499 0.71673 0.88837 0.92652 0.93462 0.88314 0.87915 0.92483 0.92942 0.99226 0.93374 0.72662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.16 71.24 0.72 -1.17 16 2 C 0.17 4.75 6.78 42.58 0.29 5.04 16 3 C -0.19 -5.77 9.01 22.32 0.20 -5.57 16 4 C -0.03 -0.92 9.26 22.72 0.21 -0.71 16 5 C -0.23 -8.93 5.90 -19.91 -0.12 -9.05 16 6 C 0.54 22.24 5.98 86.69 0.52 22.76 16 7 O -0.57 -24.84 13.73 16.71 0.23 -24.61 16 8 N -0.70 -27.05 2.72 -445.69 -1.21 -28.26 16 9 C 0.15 5.21 2.74 45.00 0.12 5.34 16 10 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 11 C -0.11 -3.67 5.14 30.93 0.16 -3.52 16 12 C -0.10 -3.56 4.33 -9.05 -0.04 -3.60 16 13 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.12 -3.70 6.20 32.27 0.20 -3.50 16 15 C 0.13 4.74 4.26 45.68 0.19 4.94 16 16 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.13 -3.81 5.41 30.68 0.17 -3.65 16 18 N -0.59 -25.96 1.31 -665.03 -0.87 -26.83 16 19 C -0.36 -17.17 6.80 84.03 0.57 -16.60 16 20 H 0.06 2.66 7.90 -2.91 -0.02 2.63 16 21 C -0.05 -2.32 5.28 84.86 0.45 -1.87 16 22 N -0.93 -52.41 13.14 21.65 0.28 -52.13 16 23 Si 1.08 42.42 29.30 68.60 2.01 44.43 16 24 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.23 -7.06 3.98 99.48 0.40 -6.67 16 27 C 0.11 4.87 5.09 86.85 0.44 5.31 16 28 C 0.36 13.16 7.76 85.13 0.66 13.82 16 29 O -0.47 -16.76 11.68 -66.47 -0.78 -17.53 16 30 N -0.53 -17.73 10.28 -296.06 -3.04 -20.78 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.37 8.07 -2.39 -0.02 1.35 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.17 4.16 6.24 -2.91 -0.02 4.14 16 35 H 0.15 5.58 4.63 -2.91 -0.01 5.57 16 36 H 0.43 17.53 2.37 -92.71 -0.22 17.31 16 37 H 0.09 2.41 7.97 -2.39 -0.02 2.39 16 38 H 0.05 2.02 6.57 -2.39 -0.02 2.00 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 2.46 7.75 -2.39 -0.02 2.44 16 41 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.26 15.22 6.18 -92.71 -0.57 14.64 16 44 H -0.01 -0.53 5.98 -2.38 -0.01 -0.54 16 45 H 0.05 2.24 3.93 -15.17 -0.06 2.18 16 46 H 0.41 11.43 9.06 -74.06 -0.67 10.76 16 Total: -1.00 -66.78 342.07 1.36 -65.41 By element: Atomic # 1 Polarization: 52.32 SS G_CDS: -0.01 Total: 52.31 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.75 Total: 7.98 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -4.84 Total: -127.99 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.55 Total: -42.15 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.01 Total: 44.43 kcal Total: -66.78 1.36 -65.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047155204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.748 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds