Wall clock time and date at job start Tue Mar 31 2020 17:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36403 * 120.34414 * 2 1 4 4 C 1.40190 * 119.26156 * 180.02562 * 3 2 1 5 5 C 1.35349 * 119.95091 * 359.97438 * 4 3 2 6 6 N 1.35764 * 120.70333 * 359.97438 * 5 4 3 7 7 C 1.46498 * 119.62751 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47117 * 270.04094 * 7 6 5 9 9 O 1.21282 * 119.99925 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00273 * 179.97438 * 8 7 6 11 11 C 1.46749 * 125.32771 * 359.69941 * 10 8 7 12 12 C 1.54123 * 106.62161 * 161.52552 * 11 10 8 13 13 H 1.08997 * 113.47445 * 151.39786 * 12 11 10 14 14 C 1.53967 * 109.47656 * 278.68203 * 12 11 10 15 15 N 1.46775 * 106.62649 * 138.17264 * 14 12 11 16 16 C 1.36937 * 125.33736 * 161.50196 * 15 14 12 17 17 H 1.07998 * 120.00264 * 354.13880 * 16 15 14 18 18 C 1.38815 * 119.99642 * 174.14057 * 16 15 14 19 19 N 1.31614 * 120.00550 * 6.98565 * 18 16 15 20 20 Si 1.86803 * 119.99707 * 186.98637 * 18 16 15 21 21 H 1.48501 * 109.47121 * 94.98555 * 20 18 16 22 22 H 1.48494 * 109.47230 * 214.98342 * 20 18 16 23 23 H 1.48502 * 109.47073 * 334.98713 * 20 18 16 24 24 C 1.46674 * 109.32399 * 341.48661 * 15 14 12 25 25 C 1.53728 * 107.94349 * 0.54179 * 24 15 14 26 26 H 1.08991 * 113.05667 * 140.00142 * 25 24 15 27 27 C 1.46640 * 125.33034 * 179.97438 * 10 8 7 28 28 C 1.34665 * 120.74535 * 0.03680 * 6 5 4 29 29 O 1.22062 * 119.98043 * 179.97438 * 28 6 5 30 30 H 1.09002 * 109.46761 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46714 * 119.99996 * 1 2 3 32 32 H 1.08999 * 109.47215 * 239.99847 * 1 2 3 33 33 H 1.08002 * 120.36807 * 0.04569 * 3 2 1 34 34 H 1.08006 * 120.02668 * 179.72977 * 4 3 2 35 35 H 1.08005 * 119.65036 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47109 * 30.04282 * 7 6 5 37 37 H 1.08994 * 109.47020 * 150.03944 * 7 6 5 38 38 H 1.09004 * 110.00659 * 280.97522 * 11 10 8 39 39 H 1.08997 * 110.00703 * 42.33876 * 11 10 8 40 40 H 1.08999 * 110.02676 * 257.46125 * 14 12 11 41 41 H 1.09003 * 110.02638 * 18.88446 * 14 12 11 42 42 H 0.97000 * 120.00253 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.76686 * 240.92326 * 24 15 14 44 44 H 1.08995 * 109.77382 * 120.16469 * 24 15 14 45 45 H 1.08993 * 109.76046 * 300.48047 * 27 10 8 46 46 H 1.08996 * 109.76051 * 61.20478 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1772 0.0000 4 6 3.5978 1.1507 -0.0005 5 6 4.2513 -0.0346 -0.0005 6 7 3.5637 -1.2053 0.0005 7 6 4.2949 -2.4747 -0.0001 8 6 4.5449 -2.9097 -1.4211 9 8 4.1514 -2.2264 -2.3426 10 7 5.2066 -4.0576 -1.6679 11 6 5.7388 -4.9669 -0.6464 12 6 5.9764 -6.3213 -1.3424 13 1 6.7805 -6.9047 -0.8939 14 6 4.6476 -7.0942 -1.4287 15 7 4.5999 -7.6995 -2.7650 16 6 3.7907 -8.7406 -3.1345 17 1 3.1869 -9.2444 -2.3942 18 6 3.7467 -9.1486 -4.4606 19 7 4.5804 -8.6297 -5.3369 20 14 2.5038 -10.4340 -5.0014 21 1 1.2951 -9.7588 -5.5383 22 1 3.1034 -11.2888 -6.0574 23 1 2.1249 -11.2763 -3.8386 24 6 5.5545 -7.0141 -3.6426 25 6 6.2568 -5.9230 -2.8183 26 1 7.3212 -5.8410 -3.0376 27 6 5.5125 -4.5906 -2.9993 28 6 2.2171 -1.2127 0.0008 29 8 1.6130 -2.2734 0.0013 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 1.6678 2.1191 0.0007 34 1 4.1559 2.0754 -0.0050 35 1 5.3312 -0.0494 -0.0014 36 1 5.2478 -2.3454 0.5133 37 1 3.7054 -3.2338 0.5140 38 1 6.6774 -4.5769 -0.2525 39 1 5.0158 -5.0852 0.1607 40 1 4.6178 -7.8718 -0.6655 41 1 3.8088 -6.4103 -1.2986 42 1 4.5493 -8.9145 -6.2636 43 1 5.0249 -6.5600 -4.4802 44 1 6.2908 -7.7266 -4.0144 45 1 4.5874 -4.7570 -3.5511 46 1 6.1437 -3.8869 -3.5419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048819065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:10 Heat of formation + Delta-G solvation = 4.687738 kcal Electronic energy + Delta-G solvation = -28824.783810 eV Core-core repulsion = 24908.989403 eV Total energy + Delta-G solvation = -3915.794407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66235 -40.15121 -38.24238 -36.97471 -35.29857 -35.02557 -32.33762 -31.43839 -30.45245 -29.74533 -28.51092 -27.32774 -25.55431 -25.44760 -23.48153 -22.61946 -22.54776 -20.22665 -19.54325 -19.46477 -17.66595 -17.58582 -17.40129 -16.70439 -16.28794 -16.02905 -15.61308 -14.92645 -14.74764 -14.58742 -14.46086 -13.96637 -13.69920 -13.35213 -13.19366 -13.15778 -12.81288 -12.73691 -12.44197 -12.26307 -12.13239 -12.01407 -11.85604 -11.74447 -11.70839 -11.46863 -10.92493 -10.81207 -10.46247 -10.37401 -10.11974 -10.04869 -10.02321 -9.94508 -9.68760 -9.65610 -8.61055 -8.47786 -7.98620 -6.83924 -5.74339 -3.06515 0.66323 1.77502 2.28848 2.55562 3.07369 3.41473 3.47237 3.48367 3.55706 4.30699 4.35680 4.38530 4.48225 4.63288 4.69605 4.82918 4.94111 4.97092 5.04459 5.07053 5.17369 5.37985 5.42019 5.49750 5.53182 5.62257 5.63535 5.66894 5.73762 5.89144 5.89652 6.03769 6.06058 6.18611 6.21103 6.28890 6.34677 6.44060 6.57926 6.65348 6.81711 6.90715 7.47245 7.55358 7.59005 7.79171 7.93973 8.12555 8.25149 9.21094 9.81660 10.45326 11.37908 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002946 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.744556 B = 9502.885434 C =10382.830420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.206 4.206 3 C -0.025 4.025 4 C -0.229 4.229 5 C 0.136 3.864 6 N -0.480 5.480 7 C 0.076 3.924 8 C 0.514 3.486 9 O -0.531 6.531 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.109 4.109 13 H 0.101 0.899 14 C 0.143 3.857 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.186 3.814 25 C -0.122 4.122 26 H 0.089 0.911 27 C 0.120 3.880 28 C 0.521 3.479 29 O -0.540 6.540 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 19.580 14.713 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.210 4.210 3 C -0.047 4.047 4 C -0.252 4.252 5 C 0.009 3.991 6 N -0.190 5.190 7 C -0.050 4.050 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.128 4.128 13 H 0.119 0.881 14 C 0.017 3.983 15 N -0.328 5.328 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.061 3.939 25 C -0.142 4.142 26 H 0.108 0.892 27 C -0.002 4.002 28 C 0.323 3.677 29 O -0.421 6.421 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.911 19.157 14.030 24.065 hybrid contribution -0.412 -0.651 -0.448 0.891 sum 3.498 18.507 13.582 23.221 Atomic orbital electron populations 1.20413 0.89073 1.01903 1.02984 1.20792 0.97874 0.91908 1.10447 1.21318 0.93899 0.97910 0.91549 1.20563 0.94647 0.97108 1.12925 1.21861 0.98310 0.84808 0.94113 1.45031 1.08039 1.06429 1.59502 1.21780 0.99260 0.87388 0.96526 1.20186 0.78175 0.80663 0.90968 1.90750 1.50445 1.53719 1.45868 1.48208 1.55207 1.21217 1.09098 1.22086 0.98369 0.90141 0.91228 1.22969 1.00080 0.94276 0.95522 0.88115 1.21259 0.92886 0.94622 0.89554 1.44204 1.45487 1.37566 1.05570 1.19047 1.17121 1.06895 0.92768 0.90369 1.24813 0.99307 1.00196 0.95918 1.69952 1.37815 1.46205 1.02805 0.86110 0.80982 0.80570 0.78188 1.21567 1.21751 1.20600 1.21057 0.91441 0.90402 0.91010 1.23143 0.99559 0.95207 0.96258 0.89227 1.22011 1.00477 0.94333 0.83375 1.16958 0.80392 0.91280 0.79103 1.90983 1.66364 1.32720 1.52076 0.91632 0.91187 0.91332 0.84952 0.83793 0.82409 0.86230 0.85232 0.91467 0.90757 0.94631 0.96363 0.93686 0.93011 0.93569 0.90516 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.64 36.01 0.35 -0.59 16 2 C -0.21 -2.56 5.90 -104.42 -0.62 -3.17 16 3 C -0.03 -0.23 9.72 -39.51 -0.38 -0.61 16 4 C -0.23 -1.81 10.01 -39.88 -0.40 -2.21 16 5 C 0.14 1.20 10.28 -16.84 -0.17 1.03 16 6 N -0.48 -5.94 2.07 -121.07 -0.25 -6.19 16 7 C 0.08 0.86 4.84 -5.20 -0.03 0.84 16 8 C 0.51 8.10 7.90 -10.99 -0.09 8.02 16 9 O -0.53 -10.62 16.74 5.56 0.09 -10.53 16 10 N -0.60 -9.22 3.30 -172.26 -0.57 -9.79 16 11 C 0.11 1.27 5.77 -3.32 -0.02 1.25 16 12 C -0.11 -1.67 4.16 -88.25 -0.37 -2.04 16 13 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.14 2.88 6.49 -3.39 -0.02 2.86 16 15 N -0.60 -15.23 3.38 -171.83 -0.58 -15.81 16 16 C -0.23 -6.47 10.24 -15.06 -0.15 -6.62 16 17 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 18 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 19 N -0.92 -27.03 10.30 55.49 0.57 -26.46 16 20 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.19 4.37 4.78 -3.57 -0.02 4.35 16 25 C -0.12 -2.11 4.02 -88.60 -0.36 -2.46 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 C 0.12 2.10 6.21 -3.61 -0.02 2.08 16 28 C 0.52 8.01 7.39 -15.45 -0.11 7.90 16 29 O -0.54 -10.41 16.09 4.86 0.08 -10.33 16 30 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 0.81 7.95 -52.49 -0.42 0.39 16 34 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.16 0.82 8.04 -52.48 -0.42 0.40 16 36 H 0.12 0.77 8.01 -51.93 -0.42 0.36 16 37 H 0.13 1.54 7.12 -51.93 -0.37 1.17 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.80 7.43 -51.93 -0.39 0.42 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.05 1.38 6.61 -51.92 -0.34 1.04 16 44 H 0.05 1.19 7.52 -51.93 -0.39 0.80 16 45 H 0.08 1.65 7.29 -51.93 -0.38 1.27 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -37.71 372.40 -9.44 -47.15 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.86 Total: -1.45 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -2.50 Total: 10.35 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.83 Total: -58.25 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.17 Total: -20.86 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.71 -9.44 -47.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048819065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.839 kcal (2) G-P(sol) polarization free energy of solvation -37.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds