Wall clock time and date at job start Tue Mar 31 2020 17:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36403 * 120.34414 * 2 1 4 4 C 1.40190 * 119.26156 * 180.02562 * 3 2 1 5 5 C 1.35349 * 119.95091 * 359.97438 * 4 3 2 6 6 N 1.35764 * 120.70333 * 359.97438 * 5 4 3 7 7 C 1.46498 * 119.62751 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47117 * 270.04094 * 7 6 5 9 9 O 1.21282 * 119.99925 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00273 * 179.97438 * 8 7 6 11 11 C 1.46749 * 125.32771 * 359.69941 * 10 8 7 12 12 C 1.54123 * 106.62161 * 161.52552 * 11 10 8 13 13 H 1.08997 * 113.47445 * 151.39786 * 12 11 10 14 14 C 1.53967 * 109.47656 * 278.68203 * 12 11 10 15 15 N 1.46775 * 106.62649 * 138.17264 * 14 12 11 16 16 C 1.36937 * 125.33736 * 161.50196 * 15 14 12 17 17 H 1.07998 * 120.00264 * 354.13880 * 16 15 14 18 18 C 1.38815 * 119.99642 * 174.14057 * 16 15 14 19 19 N 1.31614 * 120.00550 * 6.98565 * 18 16 15 20 20 Si 1.86803 * 119.99707 * 186.98637 * 18 16 15 21 21 H 1.48501 * 109.47121 * 94.98555 * 20 18 16 22 22 H 1.48494 * 109.47230 * 214.98342 * 20 18 16 23 23 H 1.48502 * 109.47073 * 334.98713 * 20 18 16 24 24 C 1.46674 * 109.32399 * 341.48661 * 15 14 12 25 25 C 1.53728 * 107.94349 * 0.54179 * 24 15 14 26 26 H 1.08991 * 113.05667 * 140.00142 * 25 24 15 27 27 C 1.46640 * 125.33034 * 179.97438 * 10 8 7 28 28 C 1.34665 * 120.74535 * 0.03680 * 6 5 4 29 29 O 1.22062 * 119.98043 * 179.97438 * 28 6 5 30 30 H 1.09002 * 109.46761 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46714 * 119.99996 * 1 2 3 32 32 H 1.08999 * 109.47215 * 239.99847 * 1 2 3 33 33 H 1.08002 * 120.36807 * 0.04569 * 3 2 1 34 34 H 1.08006 * 120.02668 * 179.72977 * 4 3 2 35 35 H 1.08005 * 119.65036 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47109 * 30.04282 * 7 6 5 37 37 H 1.08994 * 109.47020 * 150.03944 * 7 6 5 38 38 H 1.09004 * 110.00659 * 280.97522 * 11 10 8 39 39 H 1.08997 * 110.00703 * 42.33876 * 11 10 8 40 40 H 1.08999 * 110.02676 * 257.46125 * 14 12 11 41 41 H 1.09003 * 110.02638 * 18.88446 * 14 12 11 42 42 H 0.97000 * 120.00253 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.76686 * 240.92326 * 24 15 14 44 44 H 1.08995 * 109.77382 * 120.16469 * 24 15 14 45 45 H 1.08993 * 109.76046 * 300.48047 * 27 10 8 46 46 H 1.08996 * 109.76051 * 61.20478 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1772 0.0000 4 6 3.5978 1.1507 -0.0005 5 6 4.2513 -0.0346 -0.0005 6 7 3.5637 -1.2053 0.0005 7 6 4.2949 -2.4747 -0.0001 8 6 4.5449 -2.9097 -1.4211 9 8 4.1514 -2.2264 -2.3426 10 7 5.2066 -4.0576 -1.6679 11 6 5.7388 -4.9669 -0.6464 12 6 5.9764 -6.3213 -1.3424 13 1 6.7805 -6.9047 -0.8939 14 6 4.6476 -7.0942 -1.4287 15 7 4.5999 -7.6995 -2.7650 16 6 3.7907 -8.7406 -3.1345 17 1 3.1869 -9.2444 -2.3942 18 6 3.7467 -9.1486 -4.4606 19 7 4.5804 -8.6297 -5.3369 20 14 2.5038 -10.4340 -5.0014 21 1 1.2951 -9.7588 -5.5383 22 1 3.1034 -11.2888 -6.0574 23 1 2.1249 -11.2763 -3.8386 24 6 5.5545 -7.0141 -3.6426 25 6 6.2568 -5.9230 -2.8183 26 1 7.3212 -5.8410 -3.0376 27 6 5.5125 -4.5906 -2.9993 28 6 2.2171 -1.2127 0.0008 29 8 1.6130 -2.2734 0.0013 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 1.6678 2.1191 0.0007 34 1 4.1559 2.0754 -0.0050 35 1 5.3312 -0.0494 -0.0014 36 1 5.2478 -2.3454 0.5133 37 1 3.7054 -3.2338 0.5140 38 1 6.6774 -4.5769 -0.2525 39 1 5.0158 -5.0852 0.1607 40 1 4.6178 -7.8718 -0.6655 41 1 3.8088 -6.4103 -1.2986 42 1 4.5493 -8.9145 -6.2636 43 1 5.0249 -6.5600 -4.4802 44 1 6.2908 -7.7266 -4.0144 45 1 4.5874 -4.7570 -3.5511 46 1 6.1437 -3.8869 -3.5419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048819065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:09 Heat of formation + Delta-G solvation = -21.740850 kcal Electronic energy + Delta-G solvation = -28825.929840 eV Core-core repulsion = 24908.989403 eV Total energy + Delta-G solvation = -3916.940436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59135 -41.43495 -39.62614 -37.97757 -36.71217 -36.11859 -34.16515 -32.41142 -31.85793 -31.31584 -29.63347 -28.12757 -27.29342 -26.98176 -24.80593 -23.68969 -23.40556 -21.99324 -20.90727 -20.69775 -19.05829 -18.56461 -18.42845 -18.17406 -17.30654 -17.22246 -16.79182 -16.71036 -16.07022 -15.84232 -15.55772 -15.31210 -14.79537 -14.73468 -14.62925 -14.28981 -13.87405 -13.69927 -13.63452 -13.52535 -13.34779 -13.26695 -13.22354 -13.05681 -12.97117 -12.80813 -12.72918 -12.44738 -12.04070 -11.92444 -11.72776 -11.62764 -11.48739 -11.40833 -11.07506 -10.77372 -10.67178 -9.74245 -8.92365 -8.84443 -7.92123 -5.25687 -0.10384 0.94855 1.34908 1.39697 1.43182 1.43978 1.51029 2.00204 2.44419 2.67601 3.24577 3.30014 3.41970 3.59033 3.62056 3.75958 3.84012 3.90445 3.97870 4.09483 4.17920 4.22206 4.23038 4.26612 4.37521 4.51765 4.56258 4.73384 4.74420 4.77847 4.80405 4.89632 4.90712 4.98376 5.08960 5.17506 5.18267 5.25980 5.34123 5.42698 5.44001 5.57977 5.68612 5.73188 6.05652 6.16899 6.38531 6.90639 6.98931 7.06856 7.75372 8.36502 9.18405 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002946 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.744556 B = 9502.885434 C =10382.830420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.257 4.257 3 C 0.000 4.000 4 C -0.226 4.226 5 C 0.128 3.872 6 N -0.483 5.483 7 C 0.082 3.918 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.604 5.604 11 C 0.107 3.893 12 C -0.093 4.093 13 H 0.137 0.863 14 C 0.135 3.865 15 N -0.626 5.626 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.947 5.947 20 Si 0.974 3.026 21 H -0.295 1.295 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.194 3.806 25 C -0.106 4.106 26 H 0.127 0.873 27 C 0.127 3.873 28 C 0.497 3.503 29 O -0.608 6.608 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.203 0.797 36 H 0.184 0.816 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.046 0.954 41 H -0.001 1.001 42 H 0.247 0.753 43 H 0.003 0.997 44 H 0.016 0.984 45 H 0.018 0.982 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 22.143 17.749 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.260 4.260 3 C -0.021 4.021 4 C -0.247 4.247 5 C 0.002 3.998 6 N -0.191 5.191 7 C -0.043 4.043 8 C 0.296 3.704 9 O -0.466 6.466 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.112 4.112 13 H 0.155 0.845 14 C 0.009 3.991 15 N -0.352 5.352 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.803 3.197 21 H -0.222 1.222 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.068 3.932 25 C -0.126 4.126 26 H 0.145 0.855 27 C 0.004 3.996 28 C 0.302 3.698 29 O -0.495 6.495 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.186 0.814 34 H 0.204 0.796 35 H 0.220 0.780 36 H 0.201 0.799 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.841 21.743 17.134 28.515 hybrid contribution -1.287 -1.353 -1.406 2.338 sum 5.554 20.389 15.728 26.343 Atomic orbital electron populations 1.20371 0.89111 1.03359 1.01082 1.20919 0.98404 0.92253 1.14460 1.21822 0.94895 0.97929 0.87460 1.21181 0.94258 0.98551 1.10754 1.22756 1.00424 0.83781 0.92794 1.45118 1.07436 1.08021 1.58574 1.21968 1.01794 0.87131 0.93367 1.21041 0.76838 0.80110 0.92401 1.90720 1.52370 1.55530 1.47953 1.48302 1.55157 1.21527 1.08737 1.22382 1.01499 0.87447 0.90078 1.23019 0.97846 0.95858 0.94504 0.84523 1.21497 0.95418 0.94887 0.87254 1.44548 1.45382 1.37186 1.08062 1.19429 1.17418 1.07548 0.93109 0.90250 1.25648 1.01215 1.02722 0.96156 1.70175 1.39196 1.47590 1.02601 0.85120 0.78277 0.78337 0.78014 1.22205 1.21550 1.18935 1.20775 0.90304 0.91138 0.90945 1.22985 1.00506 0.92423 0.96680 0.85494 1.21687 0.97970 0.95141 0.84788 1.17544 0.81627 0.91510 0.79142 1.90923 1.67863 1.34730 1.56017 0.88261 0.94114 0.92488 0.81445 0.79582 0.77976 0.79880 0.86059 0.85563 0.89014 0.93626 0.98342 0.94351 0.97890 0.96583 0.96319 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.64 71.24 0.69 -1.20 16 2 C -0.26 -6.37 5.90 -19.73 -0.12 -6.48 16 3 C 0.00 0.01 9.72 22.32 0.22 0.22 16 4 C -0.23 -2.51 10.01 22.08 0.22 -2.28 16 5 C 0.13 1.72 10.28 83.42 0.86 2.58 16 6 N -0.48 -11.11 2.07 -655.08 -1.36 -12.47 16 7 C 0.08 1.65 4.84 85.63 0.41 2.07 16 8 C 0.51 15.45 7.90 87.66 0.69 16.15 16 9 O -0.59 -23.87 16.74 -3.04 -0.05 -23.92 16 10 N -0.60 -17.41 3.30 -817.31 -2.70 -20.11 16 11 C 0.11 2.11 5.77 86.71 0.50 2.61 16 12 C -0.09 -2.57 4.16 -9.26 -0.04 -2.61 16 13 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 14 C 0.13 5.41 6.49 86.65 0.56 5.97 16 15 N -0.63 -32.87 3.38 -697.56 -2.36 -35.22 16 16 C -0.25 -14.35 10.24 84.03 0.86 -13.49 16 17 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 18 C -0.06 -3.79 5.48 84.86 0.46 -3.33 16 19 N -0.95 -58.63 10.30 21.65 0.22 -58.41 16 20 Si 0.97 47.82 29.56 68.60 2.03 49.85 16 21 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.19 9.56 4.78 86.59 0.41 9.97 16 25 C -0.11 -3.58 4.02 -9.48 -0.04 -3.61 16 26 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 27 C 0.13 4.52 6.21 86.59 0.54 5.05 16 28 C 0.50 15.73 7.39 84.82 0.63 16.36 16 29 O -0.61 -25.33 16.09 -5.52 -0.09 -25.42 16 30 H 0.10 1.45 7.89 -2.39 -0.02 1.44 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.17 1.28 7.95 -2.91 -0.02 1.25 16 34 H 0.19 0.53 8.06 -2.91 -0.02 0.50 16 35 H 0.20 0.81 8.04 -2.91 -0.02 0.79 16 36 H 0.18 1.23 8.01 -2.39 -0.02 1.21 16 37 H 0.12 2.74 7.12 -2.39 -0.02 2.72 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.58 7.43 -2.39 -0.02 1.56 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.00 -0.05 7.72 -2.39 -0.02 -0.07 16 42 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.00 0.17 6.61 -2.38 -0.02 0.15 16 44 H 0.02 0.87 7.52 -2.39 -0.02 0.85 16 45 H 0.02 0.86 7.29 -2.39 -0.02 0.85 16 46 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -96.13 372.40 3.54 -92.59 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 0.98 Total: 5.13 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 6.86 Total: 27.97 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.19 Total: -126.20 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.14 Total: -49.34 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -96.13 3.54 -92.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048819065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.853 kcal (2) G-P(sol) polarization free energy of solvation -96.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds