Wall clock time and date at job start Tue Mar 31 2020 16:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35650 * 116.99700 * 2 1 4 4 C 1.39339 * 120.54538 * 0.27504 * 3 2 1 5 5 C 1.38300 * 118.44300 * 180.25798 * 4 3 2 6 6 C 1.50700 * 120.27806 * 179.70778 * 5 4 3 7 7 C 1.38765 * 119.44293 * 359.73075 * 5 4 3 8 8 N 1.31370 * 121.06724 * 359.97438 * 7 5 4 9 9 C 1.32859 * 121.69849 * 0.02562 * 8 7 5 10 10 C 1.47827 * 119.78583 * 180.02562 * 9 8 7 11 11 O 1.21556 * 119.99997 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00133 * 359.97438 * 10 9 8 13 13 C 1.46776 * 125.34110 * 180.02562 * 12 10 9 14 14 C 1.53967 * 106.62681 * 198.51506 * 13 12 10 15 15 H 1.09005 * 113.01221 * 94.28380 * 14 13 12 16 16 C 1.53931 * 109.25084 * 221.80967 * 14 13 12 17 17 N 1.46750 * 106.72074 * 81.63855 * 16 14 13 18 18 C 1.36933 * 125.33273 * 198.36430 * 17 16 14 19 19 H 1.07996 * 120.00377 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99644 * 359.96998 * 18 17 16 21 21 N 1.31618 * 120.00014 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99676 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47444 * 60.00308 * 22 20 18 24 24 H 1.48499 * 109.46987 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47281 * 300.00218 * 22 20 18 26 26 C 1.46645 * 109.33705 * 18.33835 * 17 16 14 27 27 C 1.53685 * 108.01359 * 359.16326 * 26 17 16 28 28 H 1.08998 * 112.56290 * 105.90967 * 27 26 17 29 29 C 1.46666 * 125.33630 * 359.97438 * 12 10 9 30 30 H 1.09003 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47297 * 299.99803 * 1 2 3 32 32 H 1.09002 * 109.47342 * 59.99654 * 1 2 3 33 33 H 1.08004 * 120.78025 * 359.96864 * 4 3 2 34 34 H 1.09004 * 109.47350 * 270.02024 * 6 5 4 35 35 H 1.08996 * 109.47237 * 30.02139 * 6 5 4 36 36 H 1.09004 * 109.46810 * 150.02355 * 6 5 4 37 37 H 1.08001 * 119.46574 * 180.02562 * 7 5 4 38 38 H 1.09001 * 110.02904 * 79.22455 * 13 12 10 39 39 H 1.09002 * 110.02393 * 317.81123 * 13 12 10 40 40 H 1.09000 * 110.00753 * 200.95229 * 16 14 13 41 41 H 1.09002 * 110.01148 * 322.32489 * 16 14 13 42 42 H 0.96998 * 119.99639 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.76006 * 239.52047 * 26 17 16 44 44 H 1.08999 * 109.75764 * 118.80446 * 26 17 16 45 45 H 1.09005 * 109.77152 * 59.83828 * 29 12 10 46 46 H 1.08998 * 109.79338 * 299.08691 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3844 0.0058 5 6 1.9696 3.5928 0.0000 6 6 1.2019 4.8897 -0.0007 7 6 3.3572 3.6012 -0.0055 8 7 4.0419 2.4800 -0.0049 9 6 3.4410 1.2951 0.0005 10 6 4.2531 0.0599 0.0016 11 8 3.7074 -1.0263 0.0070 12 7 5.5986 0.1380 -0.0035 13 6 6.5156 -1.0081 -0.0036 14 6 7.8848 -0.4768 0.4585 15 1 8.0481 -0.5944 1.5298 16 6 8.9917 -1.1063 -0.4064 17 7 9.0493 -0.3290 -1.6498 18 6 9.6272 -0.7467 -2.8188 19 1 9.6200 -0.1021 -3.6853 20 6 10.2225 -1.9987 -2.8901 21 7 10.2310 -2.7845 -1.8342 22 14 11.0115 -2.5683 -4.4846 23 1 12.1007 -1.6314 -4.8603 24 1 11.5718 -3.9311 -4.3004 25 1 9.9887 -2.5955 -5.5609 26 6 8.3905 0.9650 -1.4445 27 6 7.8672 1.0080 -0.0002 28 1 8.4652 1.6545 0.6422 29 6 6.3761 1.3816 -0.0107 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.2174 2.3528 0.0098 34 1 1.0128 5.1994 -1.0286 35 1 0.2530 4.7505 0.5173 36 1 1.7848 5.6572 0.5086 37 1 3.8828 4.5447 -0.0095 38 1 6.5958 -1.4219 -1.0088 39 1 6.1588 -1.7717 0.6875 40 1 9.9483 -1.0502 0.1131 41 1 8.7471 -2.1453 -0.6272 42 1 10.6472 -3.6592 -1.8840 43 1 7.5587 1.0696 -2.1411 44 1 9.1063 1.7719 -1.6014 45 1 6.1377 1.9707 0.8749 46 1 6.1458 1.9556 -0.9083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048867509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:03 Heat of formation + Delta-G solvation = 9.511172 kcal Electronic energy + Delta-G solvation = -28940.912170 eV Core-core repulsion = 25025.326922 eV Total energy + Delta-G solvation = -3915.585247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15313 -39.70164 -38.43811 -37.83546 -34.84441 -33.99544 -32.10805 -31.18709 -30.07019 -29.52157 -28.40181 -27.51155 -25.41627 -25.26720 -23.83616 -22.95234 -22.20458 -20.00071 -19.88770 -19.20777 -17.84655 -17.65062 -17.18718 -16.49458 -16.24361 -15.73135 -15.37988 -14.73341 -14.63394 -14.55806 -14.29802 -14.10302 -13.90691 -13.55782 -13.13876 -13.05139 -12.88463 -12.69070 -12.52050 -12.37994 -11.86703 -11.81187 -11.70224 -11.67308 -11.37821 -11.32759 -10.87045 -10.75153 -10.31546 -10.10057 -10.00769 -9.86506 -9.79058 -9.70309 -9.52135 -9.41928 -8.64342 -8.55842 -8.07227 -6.76543 -5.62569 -3.00739 0.49838 1.00586 2.86594 2.92229 3.27744 3.44945 3.49066 3.50362 3.78994 4.10093 4.26040 4.42860 4.54154 4.60509 4.65241 4.76960 4.85049 4.97034 5.12335 5.13113 5.15447 5.24169 5.29785 5.41502 5.52379 5.55789 5.62390 5.73531 5.79815 5.89907 5.94793 6.06904 6.10386 6.22224 6.43526 6.46917 6.55530 6.72694 6.80750 6.87724 6.96381 6.98517 7.52894 7.60019 7.68495 7.89102 7.92895 8.38883 8.50547 9.28555 9.89229 10.53054 11.44022 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.002981 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.181330 B = 9392.133670 C = 9887.850746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.141 3.859 4 C -0.181 4.181 5 C -0.078 4.078 6 C -0.114 4.114 7 C 0.054 3.946 8 N -0.408 5.408 9 C 0.047 3.953 10 C 0.578 3.422 11 O -0.525 6.525 12 N -0.592 5.592 13 C 0.120 3.880 14 C -0.123 4.123 15 H 0.086 0.914 16 C 0.172 3.828 17 N -0.601 5.601 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.144 3.856 27 C -0.115 4.115 28 H 0.093 0.907 29 C 0.131 3.869 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.096 0.904 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.127 14.853 7.318 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.180 6.180 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.107 4.107 8 N -0.118 5.118 9 C -0.092 4.092 10 C 0.365 3.635 11 O -0.401 6.401 12 N -0.324 5.324 13 C -0.001 4.001 14 C -0.143 4.143 15 H 0.104 0.896 16 C 0.046 3.954 17 N -0.327 5.327 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.018 3.982 27 C -0.134 4.134 28 H 0.111 0.889 29 C 0.008 3.992 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.086 0.914 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.387 13.814 7.223 24.876 hybrid contribution -0.726 0.020 -0.840 1.111 sum -20.113 13.834 6.382 25.231 Atomic orbital electron populations 1.23210 0.78709 1.04664 1.01038 1.86456 1.20755 1.24492 1.86323 1.20030 0.92225 0.85640 0.93131 1.21577 1.00773 0.91248 1.07123 1.20984 0.95314 0.95666 0.96025 1.20806 0.99817 0.93416 1.03057 1.22673 0.90519 0.96661 1.00799 1.67953 1.38993 0.97285 1.07619 1.20688 0.88438 0.92951 1.07146 1.17194 0.80794 0.87214 0.78281 1.90823 1.70900 1.27676 1.50699 1.48112 1.04336 1.09329 1.70608 1.22067 0.87653 0.87975 1.02444 1.23261 0.96122 0.94891 1.00005 0.89597 1.21374 0.92138 0.97539 0.84309 1.44217 1.66203 1.12753 1.09556 1.19007 1.28668 0.99127 0.88428 0.90556 1.24779 1.01169 0.96917 0.97664 1.69853 1.49433 1.10187 1.27605 0.86169 0.79063 0.77684 0.82671 1.21260 1.21600 1.21213 1.21205 0.95005 0.89743 0.92246 1.22859 0.94646 0.97369 0.98535 0.88860 1.21909 0.89475 0.85687 1.02111 0.87632 0.92619 0.92583 0.83824 0.90276 0.91155 0.90534 0.81903 0.90247 0.91471 0.96258 0.88576 0.93674 0.95870 0.96073 0.91442 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.81 8.56 -40.60 -0.35 -4.15 16 3 C 0.14 1.90 6.71 -38.56 -0.26 1.64 16 4 C -0.18 -1.72 8.80 -39.15 -0.34 -2.07 16 5 C -0.08 -0.65 5.90 -104.40 -0.62 -1.27 16 6 C -0.11 -0.54 10.03 36.01 0.36 -0.17 16 7 C 0.05 0.54 10.85 -17.55 -0.19 0.35 16 8 N -0.41 -5.56 6.78 -9.71 -0.07 -5.63 16 9 C 0.05 0.74 6.73 -82.88 -0.56 0.18 16 10 C 0.58 11.04 7.82 -12.34 -0.10 10.95 16 11 O -0.52 -11.42 15.42 -16.63 -0.26 -11.67 16 12 N -0.59 -11.04 3.31 -173.41 -0.57 -11.61 16 13 C 0.12 2.41 6.11 -3.39 -0.02 2.39 16 14 C -0.12 -2.37 4.17 -88.35 -0.37 -2.73 16 15 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.17 4.17 4.81 -3.42 -0.02 4.15 16 17 N -0.60 -15.52 3.37 -171.93 -0.58 -16.10 16 18 C -0.22 -6.33 10.25 -15.06 -0.15 -6.48 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 21 N -0.92 -27.14 10.16 55.49 0.56 -26.57 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.14 3.06 6.60 -3.61 -0.02 3.03 16 27 C -0.11 -2.02 4.02 -88.60 -0.36 -2.38 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 C 0.13 2.14 4.79 -3.57 -0.02 2.12 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 32 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 33 H 0.14 0.93 6.46 -52.48 -0.34 0.59 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 36 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 37 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.08 1.85 7.71 -51.93 -0.40 1.45 16 39 H 0.07 1.32 8.10 -51.93 -0.42 0.89 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 2.63 6.00 -51.93 -0.31 2.31 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.02 0.51 7.29 -51.93 -0.38 0.13 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 1.00 7.40 -51.93 -0.38 0.61 16 46 H 0.07 1.20 6.76 -51.93 -0.35 0.85 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -34.75 365.73 -9.26 -44.01 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.73 Total: -1.73 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.76 Total: 10.50 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.66 Total: -59.91 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.60 Total: -15.83 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.75 -9.26 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048867509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.526 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds