Wall clock time and date at job start Tue Mar 31 2020 17:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.40972 * 2 1 4 4 C 1.38337 * 119.46081 * 180.28268 * 3 2 1 5 5 C 1.50700 * 120.82441 * 180.02562 * 4 3 2 6 6 C 1.39985 * 118.34750 * 359.97438 * 4 3 2 7 7 C 1.47530 * 120.59403 * 179.97438 * 6 4 3 8 8 O 1.21588 * 119.99898 * 270.02018 * 7 6 4 9 9 N 1.34778 * 119.99739 * 90.03124 * 7 6 4 10 10 C 1.46667 * 125.33376 * 180.02562 * 9 7 6 11 11 C 1.53730 * 107.94104 * 180.53825 * 10 9 7 12 12 H 1.08999 * 112.56398 * 139.71436 * 11 10 9 13 13 C 1.53688 * 109.34249 * 265.60167 * 11 10 9 14 14 N 1.47877 * 107.37129 * 127.24256 * 13 11 10 15 15 C 1.36936 * 125.18362 * 181.07535 * 14 13 11 16 16 H 1.07999 * 120.00030 * 174.40431 * 15 14 13 17 17 C 1.38805 * 119.99820 * 354.39719 * 15 14 13 18 18 N 1.31623 * 120.00228 * 6.91885 * 17 15 14 19 19 Si 1.86804 * 120.00000 * 186.91579 * 17 15 14 20 20 H 1.48505 * 109.46762 * 94.98950 * 19 17 15 21 21 H 1.48499 * 109.47153 * 214.98335 * 19 17 15 22 22 H 1.48501 * 109.47052 * 334.98751 * 19 17 15 23 23 C 1.46751 * 109.48808 * 1.49207 * 14 13 11 24 24 C 1.53931 * 106.71716 * 341.24075 * 23 14 13 25 25 H 1.09004 * 113.01096 * 150.83336 * 24 23 14 26 26 C 1.46768 * 125.33921 * 359.68412 * 9 7 6 27 27 C 1.40282 * 118.81002 * 0.02562 * 6 4 3 28 28 O 1.35424 * 119.79982 * 180.02562 * 27 6 4 29 29 N 1.31884 * 119.41012 * 180.27058 * 2 1 3 30 30 H 1.09001 * 109.47235 * 269.73225 * 1 2 3 31 31 H 1.09000 * 109.47173 * 29.73110 * 1 2 3 32 32 H 1.08996 * 109.47296 * 149.73102 * 1 2 3 33 33 H 1.07996 * 120.26510 * 0.25690 * 3 2 1 34 34 H 1.09002 * 109.46549 * 269.97076 * 5 4 3 35 35 H 1.09002 * 109.47279 * 29.97454 * 5 4 3 36 36 H 1.09000 * 109.46893 * 149.97522 * 5 4 3 37 37 H 1.09002 * 109.77363 * 300.15424 * 10 9 7 38 38 H 1.08996 * 109.78015 * 60.91528 * 10 9 7 39 39 H 1.09005 * 109.75719 * 247.19830 * 13 11 10 40 40 H 1.09001 * 109.75826 * 7.90946 * 13 11 10 41 41 H 0.97004 * 120.00074 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.00501 * 221.92786 * 23 14 13 43 43 H 1.09002 * 110.00993 * 100.55559 * 23 14 13 44 44 H 1.09003 * 110.03563 * 280.78282 * 26 9 7 45 45 H 1.09000 * 110.02731 * 42.20322 * 26 9 7 46 46 H 0.96703 * 114.00059 * 269.97248 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0059 5 6 4.3408 2.5013 -0.0055 6 6 4.2355 -0.0249 -0.0112 7 6 5.7097 -0.0814 -0.0183 8 8 6.3122 -0.1024 -1.0741 9 7 6.3885 -0.1099 1.1458 10 6 7.8484 -0.1656 1.2752 11 6 8.1901 -0.1958 2.7738 12 1 9.0070 -0.8802 3.0027 13 6 8.4652 1.2352 3.2621 14 7 7.6036 1.4730 4.4402 15 6 7.5425 2.6425 5.1499 16 1 6.8175 2.7561 5.9422 17 6 8.4126 3.6819 4.8510 18 7 9.2022 3.5980 3.8012 19 14 8.4628 5.1999 5.9385 20 1 9.5463 5.0532 6.9434 21 1 8.7223 6.3994 5.1024 22 1 7.1599 5.3538 6.6342 23 6 6.8329 0.2597 4.7360 24 6 6.8562 -0.6016 3.4604 25 1 6.7856 -1.6697 3.6661 26 6 5.7830 -0.0829 2.4825 27 6 3.4758 -1.2041 -0.0109 28 8 4.0992 -2.4063 -0.0154 29 7 2.1546 -1.1489 -0.0054 30 1 -0.3634 -0.0048 1.0277 31 1 -0.3633 0.8924 -0.5096 32 1 -0.3634 -0.8875 -0.5180 33 1 1.6411 2.1375 0.0042 34 1 4.5227 2.8161 -1.0332 35 1 3.7640 3.2675 0.5126 36 1 5.2934 2.3568 0.5042 37 1 8.2273 -1.0664 0.7924 38 1 8.2935 0.7156 0.8133 39 1 9.5158 1.3359 3.5346 40 1 8.2189 1.9471 2.4743 41 1 9.8099 4.3245 3.5921 42 1 5.8060 0.5228 4.9897 43 1 7.2940 -0.2832 5.5610 44 1 5.4979 0.9365 2.7428 45 1 4.9091 -0.7338 2.5096 46 1 4.2767 -2.7540 -0.9001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048969294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:22 Heat of formation + Delta-G solvation = -8.374352 kcal Electronic energy + Delta-G solvation = -29550.123926 eV Core-core repulsion = 25633.763104 eV Total energy + Delta-G solvation = -3916.360822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11457 -39.78908 -38.05907 -37.48359 -34.89643 -34.31376 -32.30772 -31.93443 -30.46928 -29.43928 -28.46505 -27.67078 -25.54276 -25.48516 -23.74013 -22.81014 -21.59731 -20.14675 -19.64243 -19.29500 -18.56637 -17.48379 -17.26863 -16.74754 -16.18196 -15.73196 -15.37136 -14.69500 -14.47519 -14.24456 -14.18191 -13.71586 -13.41856 -13.39912 -13.16254 -13.09453 -12.75248 -12.64214 -12.56468 -12.18269 -12.12010 -11.98661 -11.91936 -11.75418 -11.50898 -11.48365 -10.92098 -10.84819 -10.46640 -10.18504 -10.11674 -10.09088 -9.91916 -9.68536 -9.64029 -9.45961 -8.94176 -8.63148 -8.36903 -6.87661 -5.77565 -3.10062 0.63703 0.95139 2.62273 3.09277 3.19196 3.36777 3.42448 3.44257 3.56361 4.26594 4.38432 4.45777 4.51161 4.81976 4.83166 4.98273 5.06348 5.14623 5.23416 5.27399 5.31813 5.44278 5.46114 5.51841 5.56792 5.62998 5.65495 5.69544 5.75724 5.87542 5.95742 5.97654 6.04811 6.16563 6.26099 6.29000 6.35580 6.50942 6.56484 6.60216 6.79266 7.26392 7.48294 7.55521 7.65709 7.71309 7.76546 8.19826 8.22503 9.15789 9.77501 10.42044 11.34467 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003771 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.151553 B = 7422.345154 C = 8149.935250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.164 3.836 3 C -0.185 4.185 4 C 0.016 3.984 5 C -0.126 4.126 6 C -0.191 4.191 7 C 0.588 3.412 8 O -0.542 6.542 9 N -0.592 5.592 10 C 0.120 3.880 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.186 3.814 14 N -0.604 5.604 15 C -0.231 4.231 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.147 3.853 24 C -0.109 4.109 25 H 0.091 0.909 26 C 0.115 3.885 27 C 0.352 3.648 28 O -0.475 6.475 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.037 0.963 43 H 0.021 0.979 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 -7.822 -8.177 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.205 4.205 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.198 4.198 7 C 0.375 3.625 8 O -0.420 6.420 9 N -0.324 5.324 10 C -0.002 4.002 11 C -0.143 4.143 12 H 0.110 0.890 13 C 0.061 3.939 14 N -0.331 5.331 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.020 3.980 24 C -0.129 4.129 25 H 0.109 0.891 26 C -0.008 4.008 27 C 0.172 3.828 28 O -0.283 6.283 29 N -0.228 5.228 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.646 -8.369 -8.204 17.988 hybrid contribution 0.649 1.393 0.177 1.547 sum -12.997 -6.976 -8.027 16.794 Atomic orbital electron populations 1.20781 0.88184 1.03726 1.03557 1.21142 0.96906 0.87069 0.92255 1.21790 0.93605 0.99644 1.05490 1.20323 0.93673 0.94343 0.90869 1.20971 1.00723 0.92943 1.03632 1.20836 0.94857 0.94123 1.09951 1.17325 0.85755 0.76580 0.82865 1.90792 1.69667 1.51249 1.30293 1.48180 1.07846 1.70678 1.05665 1.21886 0.79400 1.01802 0.97119 1.23163 0.96986 1.01654 0.92516 0.89037 1.21340 0.95326 0.87721 0.89491 1.44511 1.47116 1.08989 1.32460 1.19038 1.14703 0.90028 1.12124 0.90424 1.24794 0.98566 0.98598 0.98155 1.69963 1.27231 1.32779 1.26629 0.86146 0.77688 0.82420 0.79795 1.21602 1.21793 1.20657 1.21139 0.95579 0.88150 0.93125 1.22929 0.94320 0.99380 0.96267 0.89089 1.22108 0.96001 1.01719 0.80928 1.18940 0.86331 0.84303 0.93197 1.84696 1.76736 1.32737 1.34088 1.67017 1.09029 1.30425 1.16287 0.89887 0.90251 0.90233 0.83771 0.89654 0.89918 0.90182 0.92055 0.90689 0.93356 0.93241 0.93703 0.94508 0.96130 0.90350 0.91916 0.73699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.16 36.00 0.37 -0.40 16 2 C 0.16 1.83 6.78 -82.53 -0.56 1.27 16 3 C -0.19 -2.01 9.41 -39.50 -0.37 -2.38 16 4 C 0.02 0.21 5.95 -103.93 -0.62 -0.41 16 5 C -0.13 -1.61 9.69 36.01 0.35 -1.27 16 6 C -0.19 -2.89 4.60 -104.69 -0.48 -3.37 16 7 C 0.59 10.20 5.44 -12.47 -0.07 10.13 16 8 O -0.54 -10.75 17.41 5.29 0.09 -10.66 16 9 N -0.59 -10.17 3.31 -173.39 -0.57 -10.75 16 10 C 0.12 2.08 6.24 -3.57 -0.02 2.05 16 11 C -0.12 -2.19 3.97 -88.60 -0.35 -2.55 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.19 4.27 4.83 -2.93 -0.01 4.25 16 14 N -0.60 -14.63 3.40 -170.92 -0.58 -15.21 16 15 C -0.23 -6.18 10.24 -15.06 -0.15 -6.34 16 16 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 17 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 18 N -0.92 -26.13 10.29 55.49 0.57 -25.56 16 19 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.15 2.87 6.37 -3.42 -0.02 2.84 16 24 C -0.11 -1.81 4.19 -88.24 -0.37 -2.18 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 C 0.12 1.92 5.85 -3.28 -0.02 1.90 16 27 C 0.35 5.05 7.77 -16.61 -0.13 4.92 16 28 O -0.48 -6.29 13.01 -17.96 -0.23 -6.52 16 29 N -0.51 -6.87 10.28 -9.21 -0.09 -6.97 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.46 16 36 H 0.08 1.25 7.19 -51.93 -0.37 0.88 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.41 7.42 -51.93 -0.39 1.02 16 39 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 40 H 0.05 1.27 6.64 -51.93 -0.34 0.93 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 1.46 7.72 -51.93 -0.40 1.06 16 45 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 46 H 0.40 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -33.15 374.09 -8.83 -41.98 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.06 Total: 3.26 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.56 Total: 8.25 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.68 Total: -58.48 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.14 Total: -17.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.15 -8.83 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048969294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.609 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds