Wall clock time and date at job start Tue Mar 31 2020 17:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.40972 * 2 1 4 4 C 1.38337 * 119.46081 * 180.28268 * 3 2 1 5 5 C 1.50700 * 120.82441 * 180.02562 * 4 3 2 6 6 C 1.39985 * 118.34750 * 359.97438 * 4 3 2 7 7 C 1.47530 * 120.59403 * 179.97438 * 6 4 3 8 8 O 1.21588 * 119.99898 * 270.02018 * 7 6 4 9 9 N 1.34778 * 119.99739 * 90.03124 * 7 6 4 10 10 C 1.46667 * 125.33376 * 180.02562 * 9 7 6 11 11 C 1.53730 * 107.94104 * 180.53825 * 10 9 7 12 12 H 1.08999 * 112.56398 * 139.71436 * 11 10 9 13 13 C 1.53688 * 109.34249 * 265.60167 * 11 10 9 14 14 N 1.47877 * 107.37129 * 127.24256 * 13 11 10 15 15 C 1.36936 * 125.18362 * 181.07535 * 14 13 11 16 16 H 1.07999 * 120.00030 * 174.40431 * 15 14 13 17 17 C 1.38805 * 119.99820 * 354.39719 * 15 14 13 18 18 N 1.31623 * 120.00228 * 6.91885 * 17 15 14 19 19 Si 1.86804 * 120.00000 * 186.91579 * 17 15 14 20 20 H 1.48505 * 109.46762 * 94.98950 * 19 17 15 21 21 H 1.48499 * 109.47153 * 214.98335 * 19 17 15 22 22 H 1.48501 * 109.47052 * 334.98751 * 19 17 15 23 23 C 1.46751 * 109.48808 * 1.49207 * 14 13 11 24 24 C 1.53931 * 106.71716 * 341.24075 * 23 14 13 25 25 H 1.09004 * 113.01096 * 150.83336 * 24 23 14 26 26 C 1.46768 * 125.33921 * 359.68412 * 9 7 6 27 27 C 1.40282 * 118.81002 * 0.02562 * 6 4 3 28 28 O 1.35424 * 119.79982 * 180.02562 * 27 6 4 29 29 N 1.31884 * 119.41012 * 180.27058 * 2 1 3 30 30 H 1.09001 * 109.47235 * 269.73225 * 1 2 3 31 31 H 1.09000 * 109.47173 * 29.73110 * 1 2 3 32 32 H 1.08996 * 109.47296 * 149.73102 * 1 2 3 33 33 H 1.07996 * 120.26510 * 0.25690 * 3 2 1 34 34 H 1.09002 * 109.46549 * 269.97076 * 5 4 3 35 35 H 1.09002 * 109.47279 * 29.97454 * 5 4 3 36 36 H 1.09000 * 109.46893 * 149.97522 * 5 4 3 37 37 H 1.09002 * 109.77363 * 300.15424 * 10 9 7 38 38 H 1.08996 * 109.78015 * 60.91528 * 10 9 7 39 39 H 1.09005 * 109.75719 * 247.19830 * 13 11 10 40 40 H 1.09001 * 109.75826 * 7.90946 * 13 11 10 41 41 H 0.97004 * 120.00074 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.00501 * 221.92786 * 23 14 13 43 43 H 1.09002 * 110.00993 * 100.55559 * 23 14 13 44 44 H 1.09003 * 110.03563 * 280.78282 * 26 9 7 45 45 H 1.09000 * 110.02731 * 42.20322 * 26 9 7 46 46 H 0.96703 * 114.00059 * 269.97248 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0059 5 6 4.3408 2.5013 -0.0055 6 6 4.2355 -0.0249 -0.0112 7 6 5.7097 -0.0814 -0.0183 8 8 6.3122 -0.1024 -1.0741 9 7 6.3885 -0.1099 1.1458 10 6 7.8484 -0.1656 1.2752 11 6 8.1901 -0.1958 2.7738 12 1 9.0070 -0.8802 3.0027 13 6 8.4652 1.2352 3.2621 14 7 7.6036 1.4730 4.4402 15 6 7.5425 2.6425 5.1499 16 1 6.8175 2.7561 5.9422 17 6 8.4126 3.6819 4.8510 18 7 9.2022 3.5980 3.8012 19 14 8.4628 5.1999 5.9385 20 1 9.5463 5.0532 6.9434 21 1 8.7223 6.3994 5.1024 22 1 7.1599 5.3538 6.6342 23 6 6.8329 0.2597 4.7360 24 6 6.8562 -0.6016 3.4604 25 1 6.7856 -1.6697 3.6661 26 6 5.7830 -0.0829 2.4825 27 6 3.4758 -1.2041 -0.0109 28 8 4.0992 -2.4063 -0.0154 29 7 2.1546 -1.1489 -0.0054 30 1 -0.3634 -0.0048 1.0277 31 1 -0.3633 0.8924 -0.5096 32 1 -0.3634 -0.8875 -0.5180 33 1 1.6411 2.1375 0.0042 34 1 4.5227 2.8161 -1.0332 35 1 3.7640 3.2675 0.5126 36 1 5.2934 2.3568 0.5042 37 1 8.2273 -1.0664 0.7924 38 1 8.2935 0.7156 0.8133 39 1 9.5158 1.3359 3.5346 40 1 8.2189 1.9471 2.4743 41 1 9.8099 4.3245 3.5921 42 1 5.8060 0.5228 4.9897 43 1 7.2940 -0.2832 5.5610 44 1 5.4979 0.9365 2.7428 45 1 4.9091 -0.7338 2.5096 46 1 4.2767 -2.7540 -0.9001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048969294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:21 Heat of formation + Delta-G solvation = -33.015738 kcal Electronic energy + Delta-G solvation = -29551.192457 eV Core-core repulsion = 25633.763104 eV Total energy + Delta-G solvation = -3917.429352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22588 -41.10837 -39.50171 -38.44541 -36.57165 -35.32715 -34.10635 -32.86962 -31.96115 -31.13717 -29.55241 -28.56236 -27.25106 -27.07548 -25.06522 -24.05555 -22.64274 -21.86246 -20.93997 -20.75614 -19.53144 -18.98504 -18.48371 -18.28851 -17.62369 -16.82086 -16.66088 -16.50269 -15.74353 -15.53855 -15.37069 -15.12573 -14.74034 -14.50867 -14.32344 -14.24743 -14.01593 -13.97742 -13.64174 -13.59713 -13.32260 -13.26826 -13.11115 -12.99224 -12.86774 -12.74355 -12.68804 -12.65032 -11.97893 -11.93441 -11.86748 -11.60081 -11.47102 -11.38393 -10.70176 -10.65620 -10.53362 -9.88710 -9.78349 -8.86796 -7.85129 -5.18839 -0.32879 -0.01420 1.29358 1.46457 1.48068 1.56514 1.84084 2.26356 2.50154 2.59107 3.12622 3.32403 3.40462 3.48440 3.50252 3.61573 3.78400 3.90738 3.96307 4.13172 4.17547 4.22235 4.25862 4.45733 4.47268 4.49740 4.50578 4.56767 4.66139 4.79275 4.82864 4.86756 4.90800 4.98635 5.00406 5.03655 5.08314 5.14077 5.16620 5.33372 5.48858 5.49066 5.62277 5.76410 6.20302 6.31646 6.39707 6.75775 6.86891 7.10403 7.79039 8.42463 9.25575 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003771 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.151553 B = 7422.345154 C = 8149.935250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.164 3.836 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.122 4.122 6 C -0.216 4.216 7 C 0.591 3.409 8 O -0.575 6.575 9 N -0.595 5.595 10 C 0.123 3.877 11 C -0.111 4.111 12 H 0.117 0.883 13 C 0.199 3.801 14 N -0.624 5.624 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.972 3.028 20 H -0.289 1.289 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.142 3.858 24 C -0.093 4.093 25 H 0.130 0.870 26 C 0.125 3.875 27 C 0.348 3.652 28 O -0.485 6.485 29 N -0.522 5.522 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.181 0.819 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.245 0.755 42 H 0.044 0.956 43 H 0.032 0.968 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 -8.707 -7.548 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.027 3.973 3 C -0.195 4.195 4 C -0.003 4.003 5 C -0.178 4.178 6 C -0.223 4.223 7 C 0.379 3.621 8 O -0.456 6.456 9 N -0.325 5.325 10 C 0.001 3.999 11 C -0.131 4.131 12 H 0.135 0.865 13 C 0.074 3.926 14 N -0.350 5.350 15 C -0.368 4.368 16 H 0.101 0.899 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.017 3.983 24 C -0.113 4.113 25 H 0.148 0.852 26 C 0.002 3.998 27 C 0.168 3.832 28 O -0.295 6.295 29 N -0.243 5.243 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -16.465 -9.289 -7.557 20.359 hybrid contribution 1.433 1.676 -0.027 2.205 sum -15.032 -7.613 -7.584 18.478 Atomic orbital electron populations 1.20931 0.85128 1.05221 1.04722 1.21890 0.98791 0.86487 0.90148 1.22146 0.92416 1.01194 1.03753 1.20489 0.94953 0.93583 0.91314 1.20931 0.99268 0.93804 1.03835 1.20738 0.93252 0.95467 1.12841 1.17708 0.86839 0.75331 0.82193 1.90756 1.70742 1.52735 1.31339 1.48246 1.07703 1.70528 1.06049 1.21790 0.79850 1.01562 0.96725 1.23019 0.98731 0.98610 0.92697 0.86472 1.20990 0.93131 0.90249 0.88204 1.44789 1.47801 1.09888 1.32553 1.19423 1.14337 0.91079 1.11987 0.89861 1.25577 0.98824 1.01612 0.99454 1.70190 1.28066 1.33256 1.28211 0.85148 0.78041 0.78771 0.77923 1.21646 1.22481 1.19093 1.21327 0.95246 0.86923 0.94816 1.22969 0.93020 1.00908 0.94370 0.85178 1.21978 0.96561 1.00617 0.80602 1.18984 0.86718 0.84203 0.93269 1.84634 1.76813 1.32464 1.35600 1.67148 1.08433 1.31659 1.17072 0.88623 0.87458 0.90117 0.80184 0.89034 0.87693 0.93921 0.90050 0.93237 0.96989 0.97201 0.94565 0.93764 0.94985 0.92871 0.90324 0.71959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.16 71.23 0.72 -0.38 16 2 C 0.16 3.20 6.78 42.58 0.29 3.48 16 3 C -0.18 -3.31 9.41 22.32 0.21 -3.10 16 4 C 0.00 0.11 5.95 -19.42 -0.12 0.00 16 5 C -0.12 -3.13 9.69 71.24 0.69 -2.44 16 6 C -0.22 -6.48 4.60 -19.91 -0.09 -6.57 16 7 C 0.59 20.86 5.44 86.69 0.47 21.33 16 8 O -0.58 -23.52 17.41 -3.99 -0.07 -23.59 16 9 N -0.59 -20.59 3.31 -820.74 -2.72 -23.31 16 10 C 0.12 4.32 6.24 86.59 0.54 4.86 16 11 C -0.11 -3.90 3.97 -9.49 -0.04 -3.94 16 12 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 13 C 0.20 9.53 4.83 86.35 0.42 9.94 16 14 N -0.62 -30.63 3.40 -694.68 -2.36 -32.99 16 15 C -0.24 -12.99 10.24 84.03 0.86 -12.13 16 16 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 17 C -0.06 -3.43 5.48 84.86 0.46 -2.96 16 18 N -0.95 -56.35 10.29 21.65 0.22 -56.12 16 19 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 C 0.14 5.36 6.37 86.65 0.55 5.92 16 24 C -0.09 -2.92 4.19 -9.25 -0.04 -2.95 16 25 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 26 C 0.13 4.07 5.85 86.73 0.51 4.58 16 27 C 0.35 9.62 7.77 85.13 0.66 10.28 16 28 O -0.49 -12.38 13.01 -87.19 -1.13 -13.51 16 29 N -0.52 -13.16 10.28 -296.06 -3.04 -16.21 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.58 8.07 -2.39 -0.02 0.56 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 36 H 0.04 1.41 7.19 -2.39 -0.02 1.39 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 39 H 0.01 0.65 7.38 -2.38 -0.02 0.63 16 40 H 0.01 0.54 6.64 -2.39 -0.02 0.52 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.04 1.61 7.95 -2.39 -0.02 1.59 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 2.01 7.72 -2.39 -0.02 1.99 16 45 H 0.08 2.33 7.81 -2.39 -0.02 2.31 16 46 H 0.42 7.25 9.06 -74.06 -0.67 6.58 16 Total: -1.00 -75.17 374.09 -0.64 -75.81 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.33 Total: 16.94 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 6.10 Total: 25.92 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.90 Total: -128.63 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.20 Total: -37.11 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -75.17 -0.64 -75.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048969294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds