Wall clock time and date at job start Tue Mar 31 2020 16:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35682 * 117.00153 * 2 1 4 4 C 1.38890 * 119.62029 * 180.02562 * 3 2 1 5 5 C 1.39577 * 118.94503 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.89271 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00033 * 24.12036 * 6 5 4 8 8 N 1.34779 * 119.99725 * 204.12898 * 6 5 4 9 9 C 1.46743 * 125.33198 * 5.44877 * 8 6 5 10 10 C 1.54093 * 106.63637 * 161.58592 * 9 8 6 11 11 H 1.09000 * 113.50043 * 151.36693 * 10 9 8 12 12 C 1.53968 * 109.44361 * 278.64015 * 10 9 8 13 13 N 1.46776 * 106.62604 * 138.17961 * 12 10 9 14 14 C 1.36941 * 125.33731 * 161.50796 * 13 12 10 15 15 H 1.08000 * 120.00000 * 5.01016 * 14 13 12 16 16 C 1.38815 * 119.99711 * 185.01987 * 14 13 12 17 17 N 1.31616 * 120.00269 * 354.88825 * 16 14 13 18 18 Si 1.86803 * 119.99718 * 174.89427 * 16 14 13 19 19 H 1.48500 * 109.47303 * 94.99753 * 18 16 14 20 20 H 1.48499 * 109.46895 * 214.99807 * 18 16 14 21 21 H 1.48497 * 109.47160 * 334.99535 * 18 16 14 22 22 C 1.48235 * 109.51835 * 341.52134 * 13 12 10 23 23 C 1.53730 * 107.13532 * 0.47877 * 22 13 12 24 24 H 1.08996 * 112.55836 * 140.21465 * 23 22 13 25 25 C 1.46646 * 125.32736 * 185.75159 * 8 6 5 26 26 C 1.39968 * 118.21595 * 359.97438 * 5 4 3 27 27 C 1.37970 * 119.13629 * 359.97438 * 26 5 4 28 28 C 1.50701 * 119.51432 * 179.72310 * 27 26 5 29 29 N 1.31916 * 120.97495 * 0.02562 * 27 26 5 30 30 H 1.09004 * 109.46938 * 60.00310 * 1 2 3 31 31 H 1.08990 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46853 * 300.00438 * 1 2 3 33 33 H 1.07997 * 120.53324 * 359.97438 * 4 3 2 34 34 H 1.09006 * 110.00527 * 281.01179 * 9 8 6 35 35 H 1.08998 * 110.00720 * 42.37545 * 9 8 6 36 36 H 1.09005 * 110.02228 * 257.46401 * 12 10 9 37 37 H 1.08997 * 110.02881 * 18.88656 * 12 10 9 38 38 H 0.96994 * 119.99726 * 179.97438 * 17 16 14 39 39 H 1.09005 * 110.29980 * 241.03839 * 22 13 12 40 40 H 1.08999 * 110.03715 * 119.76991 * 22 13 12 41 41 H 1.09000 * 109.76116 * 300.44261 * 25 8 6 42 42 H 1.09001 * 109.75850 * 61.15814 * 25 8 6 43 43 H 1.08006 * 120.43029 * 179.97438 * 26 5 4 44 44 H 1.09004 * 109.47017 * 89.99909 * 28 27 26 45 45 H 1.08993 * 109.47152 * 209.99936 * 28 27 26 46 46 H 1.08994 * 109.46934 * 330.00498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5234 -0.0011 6 6 5.5284 2.6413 -0.0011 7 8 6.2106 1.7321 -0.4307 8 7 6.1153 3.7571 0.4756 9 6 5.4164 4.8733 1.1228 10 6 6.4819 5.6689 1.9015 11 1 6.2433 6.7273 2.0066 12 6 6.7551 4.9766 3.2493 13 7 8.2079 5.0152 3.4544 14 6 8.8432 4.8418 4.6551 15 1 8.2738 4.5793 5.5344 16 6 10.2192 5.0036 4.7419 17 7 10.9259 5.2242 3.6537 18 14 11.0678 4.9081 6.4033 19 1 11.5724 3.5289 6.6229 20 1 12.2054 5.8621 6.4336 21 1 10.1001 5.2576 7.4742 22 6 8.8841 5.2715 2.1604 23 6 7.7849 5.4109 1.0947 24 1 7.9983 6.2010 0.3748 25 6 7.5516 4.0484 0.4230 26 6 3.2395 3.6635 -0.0016 27 6 1.8682 3.5116 -0.0021 28 6 0.9859 4.7333 0.0037 29 7 1.3180 2.3127 -0.0016 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0231 0.3682 -0.0005 34 1 4.9499 5.5082 0.3696 35 1 4.6608 4.4922 1.8098 36 1 6.2503 5.5125 4.0532 37 1 6.4103 3.9432 3.2148 38 1 11.8873 5.3376 3.7146 39 1 9.5412 4.4398 1.9058 40 1 9.4618 6.1941 2.2171 41 1 8.1043 3.2750 0.9564 42 1 7.8818 4.0879 -0.6151 43 1 3.6808 4.6493 -0.0016 44 1 0.7731 5.0326 -1.0226 45 1 0.0518 4.5044 0.5165 46 1 1.4948 5.5465 0.5211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049011920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:52 Heat of formation + Delta-G solvation = 9.871516 kcal Electronic energy + Delta-G solvation = -28668.037616 eV Core-core repulsion = 24752.467995 eV Total energy + Delta-G solvation = -3915.569621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20604 -40.11814 -38.46166 -37.89666 -35.08012 -33.32204 -32.50150 -31.90987 -30.22787 -29.71249 -28.58765 -26.92039 -25.99885 -25.59388 -24.21826 -22.92384 -22.36793 -20.25354 -19.73105 -19.46062 -18.26437 -17.56280 -16.88559 -16.41099 -16.33398 -15.94219 -15.77271 -15.32129 -14.73564 -14.64669 -14.36277 -14.09836 -13.84200 -13.68655 -13.30983 -13.02762 -12.89985 -12.68978 -12.67302 -12.42510 -12.17531 -12.00725 -11.81801 -11.63291 -11.47810 -11.27158 -10.93489 -10.82583 -10.50044 -10.28480 -10.13277 -10.06517 -10.03725 -9.94992 -9.71760 -9.67699 -8.68350 -8.63550 -8.49213 -6.86982 -5.75920 -3.08538 0.56358 0.88715 2.61376 2.80092 3.10659 3.38866 3.44400 3.46106 3.56607 3.87184 4.20328 4.45383 4.61063 4.67309 4.76755 4.83100 4.96245 5.00523 5.04435 5.16007 5.17235 5.28059 5.31692 5.32800 5.36370 5.46848 5.52584 5.60992 5.63761 5.67563 5.70431 5.85834 5.89419 6.04671 6.06401 6.19408 6.27759 6.43995 6.56459 6.62483 6.78421 6.95471 7.44825 7.52562 7.55766 7.56559 7.76685 8.10424 8.20540 9.16881 9.78611 10.42668 11.36335 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002753 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.759947 B =10167.556782 C =10320.457522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.322 3.678 4 C -0.141 4.141 5 C -0.038 4.038 6 C 0.570 3.430 7 O -0.528 6.528 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.110 4.110 11 H 0.102 0.898 12 C 0.146 3.854 13 N -0.604 5.604 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.187 3.813 23 C -0.123 4.123 24 H 0.090 0.910 25 C 0.118 3.882 26 C -0.191 4.191 27 C 0.163 3.837 28 C -0.104 4.104 29 N -0.530 5.530 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.155 0.845 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 -0.447 -9.861 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.143 3.857 4 C -0.163 4.163 5 C -0.049 4.049 6 C 0.357 3.643 7 O -0.405 6.405 8 N -0.330 5.330 9 C -0.018 4.018 10 C -0.129 4.129 11 H 0.120 0.880 12 C 0.019 3.981 13 N -0.331 5.331 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.062 3.938 23 C -0.143 4.143 24 H 0.108 0.892 25 C -0.004 4.004 26 C -0.212 4.212 27 C 0.027 3.973 28 C -0.161 4.161 29 N -0.255 5.255 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.172 0.828 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.112 -1.350 -10.025 23.410 hybrid contribution 1.134 0.025 0.852 1.419 sum -19.978 -1.324 -9.174 22.023 Atomic orbital electron populations 1.22865 0.77113 1.03003 1.02449 1.86269 1.22971 1.24140 1.87815 1.19563 0.88864 0.84648 0.92602 1.21069 0.91911 0.98955 1.04357 1.20066 0.93715 0.93255 0.97860 1.17690 0.86441 0.81358 0.78765 1.90800 1.64547 1.37824 1.47311 1.48098 1.09443 1.17973 1.57476 1.22343 0.95843 0.87989 0.95657 1.23000 0.93773 0.99584 0.96572 0.88005 1.21220 0.87393 0.96392 0.93066 1.44591 0.98946 1.84818 1.04744 1.19044 0.90329 1.40568 0.85798 0.90481 1.24803 0.96262 1.01837 0.97380 1.69935 1.05838 1.55441 1.25682 0.86112 0.79196 0.77391 0.83150 1.21668 1.21617 1.20644 1.21346 0.89839 1.01102 0.81488 1.23159 0.97681 0.94981 0.98493 0.89209 1.22072 0.79633 0.98042 1.00606 1.22540 0.93969 1.00169 1.04481 1.20866 0.91648 0.91834 0.92954 1.20760 0.99180 0.92792 1.03402 1.66966 1.41226 0.98487 1.18843 0.92294 0.88565 0.92228 0.83013 0.91267 0.90399 0.94559 0.96643 0.93672 0.93337 0.92752 0.90248 0.91809 0.82755 0.90069 0.90286 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.58 10.47 -18.75 -0.20 -3.78 16 3 C 0.32 4.11 7.49 -17.17 -0.13 3.98 16 4 C -0.14 -1.93 9.62 -38.84 -0.37 -2.31 16 5 C -0.04 -0.53 5.70 -104.67 -0.60 -1.12 16 6 C 0.57 9.35 7.67 -12.18 -0.09 9.25 16 7 O -0.53 -10.45 17.00 5.35 0.09 -10.36 16 8 N -0.60 -9.20 3.30 -173.27 -0.57 -9.77 16 9 C 0.10 1.29 4.24 -3.34 -0.01 1.28 16 10 C -0.11 -1.65 4.17 -88.26 -0.37 -2.01 16 11 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 12 C 0.15 2.85 6.49 -3.39 -0.02 2.83 16 13 N -0.60 -14.87 3.42 -170.56 -0.58 -15.46 16 14 C -0.23 -6.28 10.24 -15.06 -0.15 -6.44 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -26.50 10.28 55.49 0.57 -25.92 16 18 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.19 4.27 4.85 -2.71 -0.01 4.25 16 23 C -0.12 -2.08 3.97 -88.60 -0.35 -2.43 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 C 0.12 2.00 6.22 -3.60 -0.02 1.98 16 26 C -0.19 -2.08 7.90 -39.03 -0.31 -2.38 16 27 C 0.16 1.67 6.77 -82.65 -0.56 1.11 16 28 C -0.10 -0.68 10.16 36.01 0.37 -0.31 16 29 N -0.53 -6.24 9.09 -9.60 -0.09 -6.32 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.15 2.09 7.91 -52.49 -0.42 1.68 16 34 H 0.07 0.64 6.42 -51.93 -0.33 0.31 16 35 H 0.08 0.92 6.97 -51.93 -0.36 0.55 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.05 1.25 6.90 -51.93 -0.36 0.89 16 40 H 0.05 1.37 7.27 -51.93 -0.38 1.00 16 41 H 0.08 1.61 7.30 -51.93 -0.38 1.23 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.16 1.36 4.50 -52.48 -0.24 1.12 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -33.21 368.23 -8.57 -41.78 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.63 Total: -1.39 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.69 Total: 8.78 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.67 Total: -57.48 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.11 Total: -14.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.21 -8.57 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049011920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.651 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds