Wall clock time and date at job start Tue Mar 31 2020 16:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35682 * 117.00153 * 2 1 4 4 C 1.38890 * 119.62029 * 180.02562 * 3 2 1 5 5 C 1.39577 * 118.94503 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.89271 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00033 * 24.12036 * 6 5 4 8 8 N 1.34779 * 119.99725 * 204.12898 * 6 5 4 9 9 C 1.46743 * 125.33198 * 5.44877 * 8 6 5 10 10 C 1.54093 * 106.63637 * 161.58592 * 9 8 6 11 11 H 1.09000 * 113.50043 * 151.36693 * 10 9 8 12 12 C 1.53968 * 109.44361 * 278.64015 * 10 9 8 13 13 N 1.46776 * 106.62604 * 138.17961 * 12 10 9 14 14 C 1.36941 * 125.33731 * 161.50796 * 13 12 10 15 15 H 1.08000 * 120.00000 * 5.01016 * 14 13 12 16 16 C 1.38815 * 119.99711 * 185.01987 * 14 13 12 17 17 N 1.31616 * 120.00269 * 354.88825 * 16 14 13 18 18 Si 1.86803 * 119.99718 * 174.89427 * 16 14 13 19 19 H 1.48500 * 109.47303 * 94.99753 * 18 16 14 20 20 H 1.48499 * 109.46895 * 214.99807 * 18 16 14 21 21 H 1.48497 * 109.47160 * 334.99535 * 18 16 14 22 22 C 1.48235 * 109.51835 * 341.52134 * 13 12 10 23 23 C 1.53730 * 107.13532 * 0.47877 * 22 13 12 24 24 H 1.08996 * 112.55836 * 140.21465 * 23 22 13 25 25 C 1.46646 * 125.32736 * 185.75159 * 8 6 5 26 26 C 1.39968 * 118.21595 * 359.97438 * 5 4 3 27 27 C 1.37970 * 119.13629 * 359.97438 * 26 5 4 28 28 C 1.50701 * 119.51432 * 179.72310 * 27 26 5 29 29 N 1.31916 * 120.97495 * 0.02562 * 27 26 5 30 30 H 1.09004 * 109.46938 * 60.00310 * 1 2 3 31 31 H 1.08990 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46853 * 300.00438 * 1 2 3 33 33 H 1.07997 * 120.53324 * 359.97438 * 4 3 2 34 34 H 1.09006 * 110.00527 * 281.01179 * 9 8 6 35 35 H 1.08998 * 110.00720 * 42.37545 * 9 8 6 36 36 H 1.09005 * 110.02228 * 257.46401 * 12 10 9 37 37 H 1.08997 * 110.02881 * 18.88656 * 12 10 9 38 38 H 0.96994 * 119.99726 * 179.97438 * 17 16 14 39 39 H 1.09005 * 110.29980 * 241.03839 * 22 13 12 40 40 H 1.08999 * 110.03715 * 119.76991 * 22 13 12 41 41 H 1.09000 * 109.76116 * 300.44261 * 25 8 6 42 42 H 1.09001 * 109.75850 * 61.15814 * 25 8 6 43 43 H 1.08006 * 120.43029 * 179.97438 * 26 5 4 44 44 H 1.09004 * 109.47017 * 89.99909 * 28 27 26 45 45 H 1.08993 * 109.47152 * 209.99936 * 28 27 26 46 46 H 1.08994 * 109.46934 * 330.00498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5234 -0.0011 6 6 5.5284 2.6413 -0.0011 7 8 6.2106 1.7321 -0.4307 8 7 6.1153 3.7571 0.4756 9 6 5.4164 4.8733 1.1228 10 6 6.4819 5.6689 1.9015 11 1 6.2433 6.7273 2.0066 12 6 6.7551 4.9766 3.2493 13 7 8.2079 5.0152 3.4544 14 6 8.8432 4.8418 4.6551 15 1 8.2738 4.5793 5.5344 16 6 10.2192 5.0036 4.7419 17 7 10.9259 5.2242 3.6537 18 14 11.0678 4.9081 6.4033 19 1 11.5724 3.5289 6.6229 20 1 12.2054 5.8621 6.4336 21 1 10.1001 5.2576 7.4742 22 6 8.8841 5.2715 2.1604 23 6 7.7849 5.4109 1.0947 24 1 7.9983 6.2010 0.3748 25 6 7.5516 4.0484 0.4230 26 6 3.2395 3.6635 -0.0016 27 6 1.8682 3.5116 -0.0021 28 6 0.9859 4.7333 0.0037 29 7 1.3180 2.3127 -0.0016 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0231 0.3682 -0.0005 34 1 4.9499 5.5082 0.3696 35 1 4.6608 4.4922 1.8098 36 1 6.2503 5.5125 4.0532 37 1 6.4103 3.9432 3.2148 38 1 11.8873 5.3376 3.7146 39 1 9.5412 4.4398 1.9058 40 1 9.4618 6.1941 2.2171 41 1 8.1043 3.2750 0.9564 42 1 7.8818 4.0879 -0.6151 43 1 3.6808 4.6493 -0.0016 44 1 0.7731 5.0326 -1.0226 45 1 0.0518 4.5044 0.5165 46 1 1.4948 5.5465 0.5211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049011920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:51 Heat of formation + Delta-G solvation = -13.842882 kcal Electronic energy + Delta-G solvation = -28669.065950 eV Core-core repulsion = 24752.467995 eV Total energy + Delta-G solvation = -3916.597955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22486 -41.27756 -39.71269 -38.90189 -36.69429 -34.43295 -33.95064 -32.99976 -31.64920 -31.30947 -29.31079 -27.69542 -27.60523 -27.03147 -25.60650 -23.92179 -23.53571 -21.94372 -20.86957 -20.80588 -19.33752 -18.75600 -18.49889 -17.51162 -17.27185 -17.01059 -16.89645 -16.76252 -16.42674 -15.84865 -15.49115 -15.18424 -14.99222 -14.74979 -14.58786 -14.44412 -14.22164 -13.68644 -13.51000 -13.46890 -13.33107 -13.20152 -13.12812 -12.96752 -12.74946 -12.72074 -12.55399 -12.06896 -12.00803 -11.87465 -11.70049 -11.61141 -11.46417 -11.40397 -11.00404 -10.74962 -10.68828 -9.77307 -9.51837 -8.88473 -7.86891 -5.20775 -0.43226 0.01855 1.44975 1.45867 1.51316 1.55270 1.70907 2.12841 2.48705 2.62808 3.08234 3.19396 3.29998 3.42111 3.54568 3.77425 3.81285 3.90894 3.92363 4.04270 4.20665 4.29752 4.40136 4.43547 4.45801 4.49586 4.53288 4.56174 4.73786 4.75713 4.78954 4.84177 4.89010 4.94822 4.97393 5.02425 5.07343 5.13384 5.21064 5.37494 5.43732 5.47099 5.61023 5.78754 6.13272 6.19703 6.31767 6.70009 6.85201 7.09474 7.77896 8.40690 9.23648 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002753 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.759947 B =10167.556782 C =10320.457522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.316 3.684 4 C -0.166 4.166 5 C -0.049 4.049 6 C 0.566 3.434 7 O -0.577 6.577 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.092 4.092 11 H 0.139 0.861 12 C 0.137 3.863 13 N -0.627 5.627 14 C -0.243 4.243 15 H 0.078 0.922 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.974 3.026 19 H -0.293 1.293 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.194 3.806 23 C -0.108 4.108 24 H 0.126 0.874 25 C 0.124 3.876 26 C -0.179 4.179 27 C 0.167 3.833 28 C -0.103 4.103 29 N -0.532 5.532 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.001 0.999 38 H 0.247 0.753 39 H 0.003 0.997 40 H 0.025 0.975 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.184 0.816 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.333 2.098 -10.200 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.138 3.862 4 C -0.188 4.188 5 C -0.060 4.060 6 C 0.356 3.644 7 O -0.457 6.457 8 N -0.328 5.328 9 C -0.016 4.016 10 C -0.111 4.111 11 H 0.157 0.843 12 C 0.012 3.988 13 N -0.354 5.354 14 C -0.372 4.372 15 H 0.096 0.904 16 C -0.257 4.257 17 N -0.597 5.597 18 Si 0.803 3.197 19 H -0.221 1.221 20 H -0.217 1.217 21 H -0.191 1.191 22 C 0.069 3.931 23 C -0.128 4.128 24 H 0.144 0.856 25 C 0.001 3.999 26 C -0.199 4.199 27 C 0.030 3.970 28 C -0.160 4.160 29 N -0.258 5.258 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.201 0.799 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.612 1.208 -10.350 26.727 hybrid contribution 2.133 -0.822 0.990 2.491 sum -22.479 0.386 -9.359 24.352 Atomic orbital electron populations 1.23116 0.75214 1.04805 1.02649 1.86250 1.24916 1.24034 1.87667 1.19575 0.88563 0.85376 0.92708 1.21019 0.92643 0.98751 1.06373 1.19872 0.92015 0.94428 0.99657 1.18164 0.87588 0.80747 0.77916 1.90768 1.65890 1.39517 1.49567 1.48152 1.08816 1.18658 1.57161 1.22648 0.94888 0.87198 0.96904 1.23038 0.93347 1.01496 0.93242 0.84296 1.21449 0.84530 0.96305 0.96483 1.44932 1.01452 1.84500 1.04496 1.19411 0.90883 1.39758 0.87131 0.90395 1.25609 0.97067 1.02409 1.00626 1.70157 1.05494 1.56683 1.27408 0.85122 0.78108 0.76804 0.79672 1.22072 1.21733 1.19136 1.21063 0.91320 0.97690 0.82998 1.23007 0.96506 0.95762 0.97496 0.85586 1.21823 0.80633 0.96763 1.00655 1.22784 0.93922 1.00077 1.03096 1.21611 0.92096 0.92504 0.90749 1.20933 0.98743 0.91417 1.04861 1.67109 1.41086 0.98781 1.18817 0.91932 0.86092 0.92058 0.84755 0.85929 0.89041 0.93514 0.98133 0.94369 0.97890 0.95682 0.95031 0.90487 0.79948 0.88404 0.90021 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.71 16 2 O -0.32 -7.47 10.47 -90.00 -0.94 -8.41 16 3 C 0.32 7.89 7.49 84.80 0.63 8.53 16 4 C -0.17 -4.64 9.62 22.75 0.22 -4.42 16 5 C -0.05 -1.30 5.70 -19.90 -0.11 -1.41 16 6 C 0.57 18.55 7.67 86.88 0.67 19.22 16 7 O -0.58 -24.01 17.00 -3.76 -0.06 -24.07 16 8 N -0.60 -17.46 3.30 -820.39 -2.71 -20.17 16 9 C 0.10 2.12 4.24 86.70 0.37 2.48 16 10 C -0.09 -2.42 4.17 -9.27 -0.04 -2.46 16 11 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 12 C 0.14 5.21 6.49 86.65 0.56 5.78 16 13 N -0.63 -31.47 3.42 -693.52 -2.37 -33.84 16 14 C -0.24 -13.61 10.24 84.03 0.86 -12.75 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.06 -3.65 5.48 84.86 0.47 -3.18 16 17 N -0.95 -56.87 10.28 21.65 0.22 -56.64 16 18 Si 0.97 46.05 29.56 68.60 2.03 48.08 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.19 9.16 4.85 86.29 0.42 9.58 16 23 C -0.11 -3.48 3.97 -9.49 -0.04 -3.51 16 24 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 25 C 0.12 4.21 6.22 86.58 0.54 4.75 16 26 C -0.18 -3.20 7.90 22.63 0.18 -3.02 16 27 C 0.17 2.78 6.77 42.48 0.29 3.07 16 28 C -0.10 -0.80 10.16 71.24 0.72 -0.07 16 29 N -0.53 -11.32 9.09 -297.19 -2.70 -14.03 16 30 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.13 4.07 7.91 -2.91 -0.02 4.05 16 34 H 0.12 1.34 6.42 -2.38 -0.02 1.32 16 35 H 0.09 1.70 6.97 -2.39 -0.02 1.69 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.00 0.04 7.72 -2.39 -0.02 0.02 16 38 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.00 0.16 6.90 -2.38 -0.02 0.14 16 40 H 0.02 1.31 7.27 -2.39 -0.02 1.29 16 41 H 0.03 1.37 7.30 -2.39 -0.02 1.35 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.18 2.07 4.50 -2.91 -0.01 2.06 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 46 H 0.11 0.33 8.07 -2.39 -0.02 0.31 16 Total: -1.00 -79.46 368.23 1.37 -78.09 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.00 Total: 6.70 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.91 Total: 24.29 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -7.56 Total: -124.68 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.01 Total: -32.49 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.46 1.37 -78.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049011920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.245 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds