Wall clock time and date at job start Tue Mar 31 2020 16:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35418 * 117.00036 * 2 1 4 4 N 1.32238 * 119.80172 * 359.97438 * 3 2 1 5 5 C 1.31873 * 121.80358 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.41276 * 180.02562 * 5 4 3 7 7 C 1.38361 * 121.18578 * 359.97438 * 5 4 3 8 8 C 1.38339 * 119.45747 * 359.78668 * 7 5 4 9 9 C 1.39990 * 118.34749 * 0.47664 * 8 7 5 10 10 C 1.47520 * 120.59825 * 179.75701 * 9 8 7 11 11 O 1.21592 * 120.00148 * 143.44034 * 10 9 8 12 12 N 1.34779 * 120.00074 * 323.44294 * 10 9 8 13 13 C 1.46658 * 125.33631 * 174.17716 * 12 10 9 14 14 C 1.53674 * 107.96999 * 179.28930 * 13 12 10 15 15 H 1.09004 * 113.31209 * 106.33319 * 14 13 12 16 16 C 1.53975 * 109.29879 * 233.06406 * 14 13 12 17 17 N 1.46756 * 106.67751 * 82.34468 * 16 14 13 18 18 C 1.36940 * 125.33645 * 198.42814 * 17 16 14 19 19 H 1.07995 * 120.00525 * 163.03300 * 18 17 16 20 20 C 1.38814 * 119.99812 * 343.03450 * 18 17 16 21 21 N 1.31622 * 120.00159 * 356.39871 * 20 18 17 22 22 Si 1.86799 * 120.00163 * 176.39729 * 20 18 17 23 23 H 1.48498 * 109.47408 * 94.95565 * 22 20 18 24 24 H 1.48495 * 109.47531 * 214.95977 * 22 20 18 25 25 H 1.48511 * 109.46967 * 334.96000 * 22 20 18 26 26 C 1.46658 * 109.33103 * 18.44955 * 17 16 14 27 27 C 1.53668 * 107.97033 * 359.29282 * 26 17 16 28 28 H 1.08998 * 112.77551 * 106.01516 * 27 26 17 29 29 C 1.46757 * 125.33059 * 354.17960 * 12 10 9 30 30 H 1.08999 * 109.47221 * 59.99903 * 1 2 3 31 31 H 1.09005 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47466 * 299.99786 * 1 2 3 33 33 H 1.08998 * 109.47359 * 89.99427 * 6 5 4 34 34 H 1.08999 * 109.47505 * 210.00310 * 6 5 4 35 35 H 1.09003 * 109.46593 * 330.00122 * 6 5 4 36 36 H 1.07999 * 120.27058 * 180.02562 * 7 5 4 37 37 H 1.07996 * 120.82607 * 180.23210 * 8 7 5 38 38 H 1.09000 * 109.76473 * 59.66299 * 13 12 10 39 39 H 1.08994 * 109.76738 * 298.92287 * 13 12 10 40 40 H 1.09003 * 110.01770 * 323.03787 * 16 14 13 41 41 H 1.09002 * 110.02221 * 201.64954 * 16 14 13 42 42 H 0.97001 * 120.00179 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.76931 * 239.66321 * 26 17 16 44 44 H 1.09005 * 109.76493 * 118.92305 * 26 17 16 45 45 H 1.09000 * 110.01960 * 79.14667 * 29 12 10 46 46 H 1.08999 * 110.02077 * 317.75323 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5083 0.0000 6 6 1.0000 4.7338 -0.0001 7 6 3.2526 3.6574 0.0016 8 6 4.0588 2.5332 0.0072 9 6 3.4450 1.2751 0.0008 10 6 4.2569 0.0435 0.0009 11 8 3.8826 -0.9315 0.6237 12 7 5.4138 -0.0011 -0.6892 13 6 6.3684 -1.1144 -0.6736 14 6 7.5317 -0.7545 -1.6110 15 1 8.4469 -0.4905 -1.0810 16 6 7.7377 -1.8933 -2.6267 17 7 6.7586 -1.6830 -3.6995 18 6 6.3559 -2.6315 -4.6014 19 1 5.4510 -2.4842 -5.1722 20 6 7.1107 -3.7824 -4.7819 21 7 8.2497 -3.9299 -4.1390 22 14 6.5100 -5.1218 -5.9371 23 1 7.1249 -4.9335 -7.2756 24 1 6.8957 -6.4504 -5.3977 25 1 5.0317 -5.0462 -6.0564 26 6 6.2794 -0.2976 -3.6547 27 6 6.9770 0.4076 -2.4811 28 1 7.7509 1.1029 -2.8064 29 6 5.9155 1.0568 -1.5739 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7881 5.0290 1.0275 34 1 1.5124 5.5474 -0.5136 35 1 0.0650 4.5114 -0.5143 36 1 3.6933 4.6434 0.0024 37 1 5.1349 2.6240 0.0123 38 1 5.8801 -2.0236 -1.0243 39 1 6.7434 -1.2642 0.3387 40 1 7.5647 -2.8568 -2.1473 41 1 8.7490 -1.8538 -3.0316 42 1 8.7774 -4.7340 -4.2654 43 1 5.2000 -0.2856 -3.5030 44 1 6.5262 0.2082 -4.5882 45 1 6.3666 1.8543 -0.9835 46 1 5.1009 1.4550 -2.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049100788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:56 Heat of formation + Delta-G solvation = 3.084565 kcal Electronic energy + Delta-G solvation = -29122.389066 eV Core-core repulsion = 25206.525140 eV Total energy + Delta-G solvation = -3915.863926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13361 -39.88753 -38.16988 -37.93288 -34.93924 -33.41073 -32.12996 -31.95254 -30.17991 -29.69136 -28.63913 -27.15381 -25.54901 -25.41556 -23.57108 -23.12752 -22.34207 -20.11290 -19.84943 -19.37370 -18.27076 -17.37059 -17.02023 -16.52049 -16.24672 -15.88215 -15.49824 -14.89643 -14.61468 -14.44493 -14.32134 -14.04018 -13.84324 -13.52454 -13.16692 -12.92843 -12.83644 -12.70145 -12.53960 -12.43499 -12.07340 -11.94819 -11.84472 -11.59344 -11.35663 -11.19967 -10.85237 -10.81757 -10.45809 -10.18013 -10.07596 -10.05202 -9.97520 -9.89057 -9.71473 -9.53995 -8.62981 -8.58120 -8.27788 -6.73050 -5.75402 -3.11451 0.58844 1.06016 2.83527 2.96478 3.17504 3.40486 3.46492 3.48635 3.62679 3.89237 4.39697 4.49567 4.55016 4.73908 4.76646 4.93029 4.99180 5.14811 5.17293 5.19645 5.21286 5.23627 5.28832 5.44973 5.49251 5.51892 5.60155 5.64768 5.69273 5.72230 5.79568 5.81117 5.94136 6.13619 6.16349 6.31205 6.39037 6.59666 6.67953 6.74235 6.84144 7.09761 7.40720 7.57006 7.61371 7.77286 7.78168 8.28843 8.39225 9.21215 9.81790 10.49139 11.37463 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003286 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.696081 B = 8519.901142 C = 9162.876378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.279 6.279 3 C 0.374 3.626 4 N -0.545 5.545 5 C 0.185 3.815 6 C -0.107 4.107 7 C -0.219 4.219 8 C -0.009 4.009 9 C -0.202 4.202 10 C 0.580 3.420 11 O -0.522 6.522 12 N -0.603 5.603 13 C 0.123 3.877 14 C -0.124 4.124 15 H 0.090 0.910 16 C 0.185 3.815 17 N -0.597 5.597 18 C -0.231 4.231 19 H 0.073 0.927 20 C -0.002 4.002 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.108 4.108 28 H 0.099 0.901 29 C 0.109 3.891 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.253 0.747 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.062 0.938 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 19.108 9.680 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.184 6.184 3 C 0.194 3.806 4 N -0.270 5.270 5 C 0.048 3.952 6 C -0.164 4.164 7 C -0.240 4.240 8 C -0.035 4.035 9 C -0.208 4.208 10 C 0.367 3.633 11 O -0.398 6.398 12 N -0.337 5.337 13 C 0.001 3.999 14 C -0.144 4.144 15 H 0.108 0.892 16 C 0.059 3.941 17 N -0.323 5.323 18 C -0.360 4.360 19 H 0.091 0.909 20 C -0.199 4.199 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.018 3.982 27 C -0.128 4.128 28 H 0.117 0.883 29 C -0.014 4.014 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.406 17.968 9.985 23.040 hybrid contribution 0.437 -0.527 -0.697 0.977 sum -9.969 17.442 9.288 22.133 Atomic orbital electron populations 1.22933 0.77255 1.03352 1.02184 1.86458 1.22680 1.23323 1.85907 1.19724 0.87977 0.84866 0.88052 1.67236 1.40277 0.98185 1.21345 1.21137 0.92186 0.91907 0.89988 1.20800 0.99388 0.92798 1.03416 1.21714 0.93790 0.99843 1.08624 1.21817 1.01119 0.90148 0.90376 1.19905 0.91517 0.95197 1.14223 1.17356 0.79492 0.86804 0.79605 1.90810 1.69318 1.35937 1.43773 1.48089 1.20376 1.20020 1.45221 1.21880 0.88889 0.90137 0.98978 1.23206 0.96453 0.98140 0.96597 0.89155 1.21071 0.93558 0.93381 0.86059 1.44115 1.49159 1.05340 1.33691 1.18964 1.04496 0.97500 1.15015 0.90935 1.24926 0.96046 0.99281 0.99682 1.69926 1.13532 1.27818 1.45008 0.86129 0.78087 0.81348 0.80383 1.21536 1.21601 1.20557 1.21149 0.95838 0.86949 0.94294 1.22842 0.96743 0.97188 0.95990 0.88288 1.22142 0.97216 0.90165 0.91880 0.92248 0.88341 0.92265 0.89931 0.90113 0.90254 0.83968 0.83250 0.90262 0.92270 0.92592 0.94130 0.93654 0.96121 0.95901 0.91982 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.28 -4.58 9.17 -35.08 -0.32 -4.90 16 3 C 0.37 5.73 7.48 -16.61 -0.12 5.60 16 4 N -0.55 -7.04 9.11 -9.21 -0.08 -7.13 16 5 C 0.19 1.86 6.78 -82.53 -0.56 1.30 16 6 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 7 C -0.22 -1.96 9.71 -39.50 -0.38 -2.34 16 8 C -0.01 -0.10 8.44 -38.89 -0.33 -0.43 16 9 C -0.20 -3.03 5.44 -104.69 -0.57 -3.60 16 10 C 0.58 10.52 7.35 -12.48 -0.09 10.43 16 11 O -0.52 -11.42 16.33 -11.85 -0.19 -11.61 16 12 N -0.60 -10.16 3.31 -173.57 -0.57 -10.73 16 13 C 0.12 2.25 6.24 -3.61 -0.02 2.23 16 14 C -0.12 -2.18 4.09 -88.48 -0.36 -2.54 16 15 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 16 C 0.18 4.32 4.53 -3.39 -0.02 4.30 16 17 N -0.60 -15.15 3.37 -171.89 -0.58 -15.72 16 18 C -0.23 -6.52 10.19 -15.06 -0.15 -6.67 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C 0.00 -0.06 5.44 -17.43 -0.09 -0.16 16 21 N -0.92 -26.76 10.70 55.49 0.59 -26.17 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.14 2.95 6.62 -3.61 -0.02 2.93 16 27 C -0.11 -1.72 4.09 -88.48 -0.36 -2.08 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.11 1.48 4.48 -3.39 -0.02 1.47 16 30 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.15 1.31 5.68 -52.49 -0.30 1.01 16 38 H 0.08 1.76 7.47 -51.93 -0.39 1.37 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.47 7.15 -51.93 -0.37 1.10 16 41 H 0.04 1.04 7.65 -51.93 -0.40 0.64 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.45 7.47 -51.93 -0.39 0.06 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.63 6.49 -51.93 -0.34 0.30 16 46 H 0.07 0.95 7.24 -51.93 -0.38 0.58 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.15 368.90 -9.06 -44.21 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.74 Total: -2.47 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -1.69 Total: 11.63 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.64 Total: -59.75 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.52 Total: -16.51 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.15 -9.06 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049100788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.293 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds