Wall clock time and date at job start Tue Mar 31 2020 16:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35418 * 117.00036 * 2 1 4 4 N 1.32238 * 119.80172 * 359.97438 * 3 2 1 5 5 C 1.31873 * 121.80358 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.41276 * 180.02562 * 5 4 3 7 7 C 1.38361 * 121.18578 * 359.97438 * 5 4 3 8 8 C 1.38339 * 119.45747 * 359.78668 * 7 5 4 9 9 C 1.39990 * 118.34749 * 0.47664 * 8 7 5 10 10 C 1.47520 * 120.59825 * 179.75701 * 9 8 7 11 11 O 1.21592 * 120.00148 * 143.44034 * 10 9 8 12 12 N 1.34779 * 120.00074 * 323.44294 * 10 9 8 13 13 C 1.46658 * 125.33631 * 174.17716 * 12 10 9 14 14 C 1.53674 * 107.96999 * 179.28930 * 13 12 10 15 15 H 1.09004 * 113.31209 * 106.33319 * 14 13 12 16 16 C 1.53975 * 109.29879 * 233.06406 * 14 13 12 17 17 N 1.46756 * 106.67751 * 82.34468 * 16 14 13 18 18 C 1.36940 * 125.33645 * 198.42814 * 17 16 14 19 19 H 1.07995 * 120.00525 * 163.03300 * 18 17 16 20 20 C 1.38814 * 119.99812 * 343.03450 * 18 17 16 21 21 N 1.31622 * 120.00159 * 356.39871 * 20 18 17 22 22 Si 1.86799 * 120.00163 * 176.39729 * 20 18 17 23 23 H 1.48498 * 109.47408 * 94.95565 * 22 20 18 24 24 H 1.48495 * 109.47531 * 214.95977 * 22 20 18 25 25 H 1.48511 * 109.46967 * 334.96000 * 22 20 18 26 26 C 1.46658 * 109.33103 * 18.44955 * 17 16 14 27 27 C 1.53668 * 107.97033 * 359.29282 * 26 17 16 28 28 H 1.08998 * 112.77551 * 106.01516 * 27 26 17 29 29 C 1.46757 * 125.33059 * 354.17960 * 12 10 9 30 30 H 1.08999 * 109.47221 * 59.99903 * 1 2 3 31 31 H 1.09005 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47466 * 299.99786 * 1 2 3 33 33 H 1.08998 * 109.47359 * 89.99427 * 6 5 4 34 34 H 1.08999 * 109.47505 * 210.00310 * 6 5 4 35 35 H 1.09003 * 109.46593 * 330.00122 * 6 5 4 36 36 H 1.07999 * 120.27058 * 180.02562 * 7 5 4 37 37 H 1.07996 * 120.82607 * 180.23210 * 8 7 5 38 38 H 1.09000 * 109.76473 * 59.66299 * 13 12 10 39 39 H 1.08994 * 109.76738 * 298.92287 * 13 12 10 40 40 H 1.09003 * 110.01770 * 323.03787 * 16 14 13 41 41 H 1.09002 * 110.02221 * 201.64954 * 16 14 13 42 42 H 0.97001 * 120.00179 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.76931 * 239.66321 * 26 17 16 44 44 H 1.09005 * 109.76493 * 118.92305 * 26 17 16 45 45 H 1.09000 * 110.01960 * 79.14667 * 29 12 10 46 46 H 1.08999 * 110.02077 * 317.75323 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5083 0.0000 6 6 1.0000 4.7338 -0.0001 7 6 3.2526 3.6574 0.0016 8 6 4.0588 2.5332 0.0072 9 6 3.4450 1.2751 0.0008 10 6 4.2569 0.0435 0.0009 11 8 3.8826 -0.9315 0.6237 12 7 5.4138 -0.0011 -0.6892 13 6 6.3684 -1.1144 -0.6736 14 6 7.5317 -0.7545 -1.6110 15 1 8.4469 -0.4905 -1.0810 16 6 7.7377 -1.8933 -2.6267 17 7 6.7586 -1.6830 -3.6995 18 6 6.3559 -2.6315 -4.6014 19 1 5.4510 -2.4842 -5.1722 20 6 7.1107 -3.7824 -4.7819 21 7 8.2497 -3.9299 -4.1390 22 14 6.5100 -5.1218 -5.9371 23 1 7.1249 -4.9335 -7.2756 24 1 6.8957 -6.4504 -5.3977 25 1 5.0317 -5.0462 -6.0564 26 6 6.2794 -0.2976 -3.6547 27 6 6.9770 0.4076 -2.4811 28 1 7.7509 1.1029 -2.8064 29 6 5.9155 1.0568 -1.5739 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7881 5.0290 1.0275 34 1 1.5124 5.5474 -0.5136 35 1 0.0650 4.5114 -0.5143 36 1 3.6933 4.6434 0.0024 37 1 5.1349 2.6240 0.0123 38 1 5.8801 -2.0236 -1.0243 39 1 6.7434 -1.2642 0.3387 40 1 7.5647 -2.8568 -2.1473 41 1 8.7490 -1.8538 -3.0316 42 1 8.7774 -4.7340 -4.2654 43 1 5.2000 -0.2856 -3.5030 44 1 6.5262 0.2082 -4.5882 45 1 6.3666 1.8543 -0.9835 46 1 5.1009 1.4550 -2.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049100788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:55 Heat of formation + Delta-G solvation = -22.042445 kcal Electronic energy + Delta-G solvation = -29123.478655 eV Core-core repulsion = 25206.525140 eV Total energy + Delta-G solvation = -3916.953515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16905 -41.18395 -39.40486 -39.12932 -36.61784 -34.54018 -33.80858 -32.77653 -31.69973 -31.35608 -29.46531 -28.23102 -27.25763 -26.91433 -24.94285 -24.04825 -23.43137 -21.86771 -21.07379 -20.83873 -19.26897 -18.97546 -18.22218 -17.89550 -17.44034 -17.10113 -16.79734 -16.67228 -15.73290 -15.68763 -15.47351 -15.19597 -15.01405 -14.74600 -14.59444 -14.26990 -14.03738 -13.84211 -13.63392 -13.43944 -13.33848 -13.21516 -13.02961 -12.98595 -12.77895 -12.74126 -12.70272 -12.08177 -12.02535 -11.94519 -11.74936 -11.61228 -11.45391 -11.26730 -10.92530 -10.73985 -10.64343 -9.72467 -9.44330 -8.80112 -7.92337 -5.29893 -0.31665 0.22490 1.40949 1.42835 1.51837 1.61940 1.94204 2.04633 2.45392 2.67503 3.07316 3.24725 3.37950 3.48779 3.68493 3.71637 3.84022 3.90510 3.95359 4.19408 4.20898 4.29332 4.32079 4.32954 4.37711 4.50869 4.56189 4.63124 4.71536 4.78375 4.83806 4.84622 4.90082 4.96930 5.00510 5.02075 5.15363 5.18604 5.26572 5.36576 5.43238 5.50396 5.55687 5.73323 6.15735 6.21033 6.45609 6.74085 7.06021 7.08557 7.76102 8.40317 9.18725 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003286 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.696081 B = 8519.901142 C = 9162.876378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.348 3.652 4 N -0.557 5.557 5 C 0.178 3.822 6 C -0.104 4.104 7 C -0.201 4.201 8 C -0.001 4.001 9 C -0.233 4.233 10 C 0.575 3.425 11 O -0.578 6.578 12 N -0.604 5.604 13 C 0.128 3.872 14 C -0.106 4.106 15 H 0.132 0.868 16 C 0.192 3.808 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.067 0.933 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.973 3.027 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.137 3.863 27 C -0.092 4.092 28 H 0.141 0.859 29 C 0.111 3.889 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.190 0.810 37 H 0.178 0.822 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.016 0.984 42 H 0.250 0.750 43 H 0.006 0.994 44 H 0.028 0.972 45 H 0.118 0.882 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 23.804 9.926 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.169 3.831 4 N -0.283 5.283 5 C 0.041 3.959 6 C -0.161 4.161 7 C -0.221 4.221 8 C -0.026 4.026 9 C -0.239 4.239 10 C 0.365 3.635 11 O -0.459 6.459 12 N -0.337 5.337 13 C 0.006 3.994 14 C -0.126 4.126 15 H 0.149 0.851 16 C 0.066 3.934 17 N -0.346 5.346 18 C -0.379 4.379 19 H 0.085 0.915 20 C -0.250 4.250 21 N -0.588 5.588 22 Si 0.801 3.199 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.201 1.201 26 C 0.012 3.988 27 C -0.111 4.111 28 H 0.159 0.841 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.207 0.793 37 H 0.195 0.805 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.046 0.954 45 H 0.136 0.864 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.069 22.728 10.210 26.874 hybrid contribution 0.233 -1.900 -0.789 2.070 sum -9.836 20.828 9.422 24.886 Atomic orbital electron populations 1.23076 0.75693 1.04282 1.02721 1.86399 1.24615 1.25037 1.86450 1.19968 0.88465 0.85185 0.89522 1.67305 1.40445 0.98624 1.21923 1.22009 0.93855 0.91942 0.88091 1.20948 0.98818 0.91669 1.04674 1.22224 0.92969 1.01179 1.05689 1.22146 1.02610 0.88777 0.89052 1.19829 0.91132 0.95266 1.17650 1.17971 0.79485 0.87408 0.78668 1.90762 1.70572 1.38287 1.46246 1.48167 1.19923 1.20233 1.45335 1.21634 0.89184 0.89039 0.99588 1.23080 0.97753 0.96380 0.95368 0.85057 1.20837 0.91838 0.93938 0.86756 1.44417 1.49346 1.07167 1.33719 1.19258 1.04483 0.98812 1.15396 0.91521 1.25698 0.96470 1.01360 1.01456 1.70108 1.14461 1.28081 1.46177 0.85157 0.77727 0.78375 0.78636 1.20567 1.21803 1.20091 1.21363 0.95419 0.85107 0.96929 1.22922 0.97770 0.96746 0.93702 0.84102 1.22407 0.96892 0.90014 0.91728 0.91778 0.87315 0.91513 0.88451 0.87068 0.90794 0.79251 0.80514 0.95765 0.91001 0.97055 0.96586 0.94122 0.97615 0.95404 0.86384 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.07 16 2 O -0.32 -11.10 9.17 -70.75 -0.65 -11.75 16 3 C 0.35 10.75 7.48 85.13 0.64 11.38 16 4 N -0.56 -13.73 9.11 -296.06 -2.70 -16.43 16 5 C 0.18 2.94 6.78 42.58 0.29 3.23 16 6 C -0.10 -0.83 10.16 71.24 0.72 -0.11 16 7 C -0.20 -2.53 9.71 22.32 0.22 -2.32 16 8 C 0.00 -0.01 8.44 22.72 0.19 0.18 16 9 C -0.23 -6.77 5.44 -19.91 -0.11 -6.88 16 10 C 0.57 21.21 7.35 86.69 0.64 21.85 16 11 O -0.58 -26.93 16.33 12.38 0.20 -26.73 16 12 N -0.60 -19.83 3.31 -821.31 -2.72 -22.55 16 13 C 0.13 4.78 6.24 86.58 0.54 5.32 16 14 C -0.11 -3.59 4.09 -9.41 -0.04 -3.63 16 15 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 16 C 0.19 9.30 4.53 86.66 0.39 9.69 16 17 N -0.62 -32.55 3.37 -697.74 -2.35 -34.91 16 18 C -0.25 -14.68 10.19 84.03 0.86 -13.82 16 19 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.06 -3.26 5.44 84.86 0.46 -2.79 16 21 N -0.94 -57.25 10.70 21.65 0.23 -57.02 16 22 Si 0.97 47.43 29.55 68.60 2.03 49.45 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 C 0.14 5.57 6.62 86.57 0.57 6.15 16 27 C -0.09 -2.64 4.09 -9.41 -0.04 -2.68 16 28 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 29 C 0.11 2.58 4.48 86.66 0.39 2.97 16 30 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 31 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 0.25 8.07 -2.39 -0.02 0.23 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.18 2.01 5.68 -2.91 -0.02 1.99 16 38 H 0.02 1.15 7.47 -2.39 -0.02 1.14 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.01 0.63 7.15 -2.39 -0.02 0.61 16 41 H 0.02 0.85 7.65 -2.39 -0.02 0.83 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.01 0.26 7.47 -2.39 -0.02 0.24 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.12 1.56 6.49 -2.39 -0.02 1.55 16 46 H 0.08 1.80 7.24 -2.39 -0.02 1.78 16 Total: -1.00 -86.49 368.90 1.93 -84.56 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 0.99 Total: 4.74 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 6.90 Total: 30.63 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -7.54 Total: -130.90 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.45 Total: -38.48 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -86.49 1.93 -84.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049100788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.518 kcal (2) G-P(sol) polarization free energy of solvation -86.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds