Wall clock time and date at job start Tue Mar 31 2020 17:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38003 * 120.82195 * 2 1 4 4 C 1.39123 * 119.26404 * 180.27880 * 3 2 1 5 5 O 1.35502 * 119.52142 * 179.72473 * 4 3 2 6 6 N 1.32429 * 120.95197 * 359.69574 * 4 3 2 7 7 C 1.31642 * 121.79852 * 0.02562 * 6 4 3 8 8 C 1.39562 * 120.62720 * 0.02562 * 7 6 4 9 9 C 1.47614 * 120.49898 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99792 * 235.17679 * 9 8 7 11 11 N 1.34772 * 119.99935 * 55.17482 * 9 8 7 12 12 C 1.46802 * 119.58235 * 356.12021 * 11 9 8 13 13 C 1.51064 * 108.34363 * 129.65809 * 12 11 9 14 14 C 1.52739 * 110.27234 * 55.83411 * 13 12 11 15 15 C 1.53015 * 110.76418 * 298.26458 * 14 13 12 16 16 H 1.09000 * 111.38217 * 290.29839 * 15 14 13 17 17 C 1.45127 * 119.57568 * 176.13864 * 11 9 8 18 18 H 1.08997 * 109.96865 * 348.07605 * 17 11 9 19 19 C 1.54417 * 112.30199 * 110.92380 * 17 11 9 20 20 C 1.54567 * 102.44776 * 156.91970 * 19 17 11 21 21 N 1.48209 * 107.10932 * 168.09476 * 15 14 13 22 22 C 1.36940 * 125.76760 * 89.11624 * 21 15 14 23 23 H 1.08002 * 119.99975 * 355.14056 * 22 21 15 24 24 C 1.38813 * 120.00142 * 175.14789 * 22 21 15 25 25 N 1.31618 * 120.00053 * 5.76743 * 24 22 21 26 26 Si 1.86797 * 120.00053 * 185.77146 * 24 22 21 27 27 H 1.48503 * 109.47077 * 94.99147 * 26 24 22 28 28 H 1.48501 * 109.47327 * 214.99078 * 26 24 22 29 29 H 1.48501 * 109.47316 * 334.99501 * 26 24 22 30 30 H 1.09007 * 109.47037 * 274.70250 * 1 2 3 31 31 H 1.09003 * 109.47608 * 34.69889 * 1 2 3 32 32 H 1.08994 * 109.47463 * 154.70201 * 1 2 3 33 33 H 1.08001 * 120.36433 * 359.97438 * 3 2 1 34 34 H 0.96703 * 113.99561 * 269.97319 * 5 4 3 35 35 H 1.08003 * 119.68627 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.83229 * 247.47038 * 12 11 9 37 37 H 1.09003 * 109.83099 * 8.35416 * 12 11 9 38 38 H 1.08995 * 107.05108 * 296.61722 * 13 12 11 39 39 H 1.09001 * 110.38642 * 177.13711 * 13 12 11 40 40 H 1.09003 * 109.21043 * 177.94619 * 14 13 12 41 41 H 1.08999 * 109.21382 * 58.58648 * 14 13 12 42 42 H 1.09004 * 110.81365 * 275.16190 * 19 17 11 43 43 H 1.09008 * 110.81492 * 38.68147 * 19 17 11 44 44 H 1.08999 * 109.88410 * 97.73988 * 20 19 17 45 45 H 1.09004 * 109.88587 * 218.75271 * 20 19 17 46 46 H 0.96994 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0059 5 8 4.3042 2.3078 -0.0116 6 7 4.2547 -0.0065 -0.0055 7 6 3.6204 -1.1600 0.0000 8 6 2.2255 -1.2043 0.0051 9 6 1.5171 -2.4994 0.0107 10 8 0.6948 -2.7462 -0.8502 11 7 1.7819 -3.4082 0.9700 12 6 2.8367 -3.1365 1.9543 13 6 2.2707 -3.3723 3.3349 14 6 1.7053 -4.7872 3.4406 15 6 0.5596 -4.9892 2.4466 16 1 -0.3205 -4.4129 2.7322 17 6 1.0210 -4.6431 1.0165 18 1 0.1589 -4.5743 0.3531 19 6 1.8770 -5.8732 0.6446 20 6 1.1064 -7.0314 1.3185 21 7 0.2688 -6.4419 2.4058 22 6 -0.6118 -7.1051 3.2182 23 1 -1.1072 -6.5790 4.0209 24 6 -0.8674 -8.4536 3.0104 25 7 -0.1814 -9.1219 2.1076 26 14 -2.1852 -9.3196 4.0117 27 1 -3.4613 -9.3239 3.2521 28 1 -1.7641 -10.7181 4.2799 29 1 -2.3781 -8.6051 5.2992 30 1 -0.3633 0.0843 1.0243 31 1 -0.3634 0.8449 -0.5850 32 1 -0.3634 -0.9290 -0.4391 33 1 1.6935 2.1314 -0.0004 34 1 4.5037 2.6424 -0.8967 35 1 4.1848 -2.0808 0.0006 36 1 3.6667 -3.8275 1.8071 37 1 3.1869 -2.1099 1.8472 38 1 1.4709 -2.6463 3.4807 39 1 3.0423 -3.2286 4.0913 40 1 1.3351 -4.9509 4.4527 41 1 2.4961 -5.5064 3.2273 42 1 1.9117 -6.0084 -0.4365 43 1 2.8820 -5.7849 1.0574 44 1 0.4662 -7.5254 0.5876 45 1 1.8102 -7.7492 1.7399 46 1 -0.3598 -10.0642 1.9626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049714903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:05 Heat of formation + Delta-G solvation = -1.641979 kcal Electronic energy + Delta-G solvation = -29370.040671 eV Core-core repulsion = 25453.971787 eV Total energy + Delta-G solvation = -3916.068884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31036 -40.01401 -38.18688 -37.21116 -35.35882 -34.14750 -32.52888 -32.38376 -30.84840 -29.05989 -28.40711 -28.03918 -25.36037 -24.34997 -23.87769 -22.74687 -21.93041 -20.68866 -20.06515 -18.75263 -18.32001 -17.81298 -17.15118 -16.88847 -16.16633 -16.08930 -14.97136 -14.80084 -14.74431 -14.48449 -14.32077 -14.00634 -13.77312 -13.48219 -13.32153 -13.08805 -13.00221 -12.79335 -12.43851 -12.38845 -12.09818 -12.00920 -11.92919 -11.37748 -11.09979 -10.97466 -10.84436 -10.66834 -10.57010 -10.28410 -10.10140 -9.97604 -9.87272 -9.67273 -9.62899 -9.58828 -9.13996 -8.65451 -8.38456 -6.88717 -5.75249 -3.07490 0.38794 0.81821 2.55590 2.95688 3.09219 3.39340 3.44354 3.45230 3.46421 4.19031 4.29122 4.36845 4.46252 4.68144 4.86842 4.90764 5.08351 5.11719 5.23343 5.29338 5.33002 5.37468 5.45109 5.47363 5.51988 5.57383 5.66206 5.73410 5.80620 5.94623 6.01667 6.05807 6.10276 6.14318 6.26372 6.30198 6.46292 6.53842 6.68309 6.89851 7.01257 7.07135 7.44409 7.47480 7.49788 7.56129 7.76571 8.13376 8.18626 9.13721 9.76047 10.44417 11.37974 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002938 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.156949 B = 9526.991738 C = 9671.307253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.023 3.977 3 C -0.192 4.192 4 C 0.326 3.674 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.160 3.840 8 C -0.186 4.186 9 C 0.562 3.438 10 O -0.530 6.530 11 N -0.580 5.580 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.128 4.128 15 C 0.155 3.845 16 H 0.058 0.942 17 C 0.130 3.870 18 H 0.103 0.897 19 C -0.150 4.150 20 C 0.176 3.824 21 N -0.598 5.598 22 C -0.225 4.225 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.919 5.919 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.168 0.832 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 20.347 -4.082 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 C -0.213 4.213 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.002 3.998 8 C -0.191 4.191 9 C 0.349 3.651 10 O -0.407 6.407 11 N -0.311 5.311 12 C -0.023 4.023 13 C -0.173 4.173 14 C -0.168 4.168 15 C 0.046 3.954 16 H 0.076 0.924 17 C 0.026 3.974 18 H 0.121 0.879 19 C -0.189 4.189 20 C 0.052 3.948 21 N -0.323 5.323 22 C -0.353 4.353 23 H 0.097 0.903 24 C -0.202 4.202 25 N -0.566 5.566 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.185 0.815 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.195 19.955 -3.897 21.922 hybrid contribution -1.256 -0.415 0.145 1.331 sum 6.938 19.541 -3.752 21.073 Atomic orbital electron populations 1.21111 0.89138 1.05508 1.03503 1.20231 0.97353 0.90601 0.90371 1.21927 0.93728 0.99453 1.06200 1.19311 0.87059 0.85202 0.93635 1.84720 1.76004 1.34147 1.34042 1.67189 1.41880 0.98174 1.15393 1.22736 0.90022 0.95341 0.91696 1.20916 0.95470 0.94702 1.08049 1.17981 0.82327 0.83006 0.81803 1.90786 1.34675 1.78495 1.36785 1.47579 1.36227 1.18534 1.28746 1.21573 0.90345 1.01292 0.89069 1.21488 1.00816 0.99362 0.95602 1.22102 0.99660 0.93906 1.01149 1.21320 0.94992 0.87928 0.91148 0.92381 1.21812 0.94685 0.81579 0.99332 0.87944 1.23079 0.98916 0.96502 1.00395 1.21553 0.92512 0.90771 0.90003 1.45184 1.47863 1.00212 1.39043 1.19004 1.16091 0.92078 1.08121 0.90346 1.24804 0.99702 0.96577 0.99158 1.69929 1.41880 1.08497 1.36301 0.86136 0.81633 0.78977 0.79234 1.21622 1.21794 1.20668 0.89947 0.90413 0.88546 0.83595 0.73875 0.81523 0.91137 0.89861 0.92280 0.90956 0.91975 0.91735 0.91779 0.92124 0.92718 0.94009 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.74 36.00 0.35 -0.99 16 2 C 0.02 0.24 5.94 -103.96 -0.62 -0.38 16 3 C -0.19 -1.75 9.74 -39.34 -0.38 -2.13 16 4 C 0.33 3.28 7.74 -16.97 -0.13 3.15 16 5 O -0.48 -3.95 13.55 -18.20 -0.25 -4.20 16 6 N -0.51 -5.83 10.37 -12.97 -0.13 -5.96 16 7 C 0.16 1.77 8.61 -17.14 -0.15 1.62 16 8 C -0.19 -2.26 4.79 -104.83 -0.50 -2.76 16 9 C 0.56 8.35 6.56 -12.44 -0.08 8.27 16 10 O -0.53 -9.57 14.58 5.29 0.08 -9.49 16 11 N -0.58 -8.50 2.77 -167.64 -0.46 -8.96 16 12 C 0.10 1.19 5.18 -4.85 -0.03 1.17 16 13 C -0.13 -1.71 5.94 -27.84 -0.17 -1.87 16 14 C -0.13 -2.15 5.16 -26.86 -0.14 -2.29 16 15 C 0.15 3.04 3.54 -66.35 -0.23 2.80 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.13 2.33 3.03 -67.30 -0.20 2.13 16 18 H 0.10 2.08 6.99 -51.93 -0.36 1.71 16 19 C -0.15 -2.75 6.11 -25.17 -0.15 -2.91 16 20 C 0.18 4.12 5.30 -1.62 -0.01 4.11 16 21 N -0.60 -14.57 2.99 -160.35 -0.48 -15.05 16 22 C -0.22 -6.07 10.30 -15.06 -0.16 -6.22 16 23 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -26.55 10.55 55.49 0.59 -25.97 16 26 Si 0.91 21.84 29.56 -169.99 -5.02 16.81 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.59 8.13 -51.93 -0.42 0.16 16 32 H 0.10 1.21 5.75 -51.93 -0.30 0.91 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.40 1.23 9.06 45.56 0.41 1.65 16 35 H 0.17 1.57 7.43 -52.48 -0.39 1.18 16 36 H 0.07 0.79 7.61 -51.93 -0.39 0.40 16 37 H 0.08 0.88 4.77 -51.93 -0.25 0.63 16 38 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.16 7.15 -51.93 -0.37 0.79 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.02 6.94 -51.92 -0.36 0.66 16 44 H 0.05 1.44 7.29 -51.93 -0.38 1.06 16 45 H 0.04 1.07 7.79 -51.93 -0.40 0.66 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -32.75 360.82 -8.67 -41.42 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.72 Total: 2.52 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.69 Total: 3.44 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.49 Total: -55.95 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.17 Total: -13.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.75 -8.67 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049714903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.774 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds