Wall clock time and date at job start Tue Mar 31 2020 17:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38003 * 120.82195 * 2 1 4 4 C 1.39123 * 119.26404 * 180.27880 * 3 2 1 5 5 O 1.35502 * 119.52142 * 179.72473 * 4 3 2 6 6 N 1.32429 * 120.95197 * 359.69574 * 4 3 2 7 7 C 1.31642 * 121.79852 * 0.02562 * 6 4 3 8 8 C 1.39562 * 120.62720 * 0.02562 * 7 6 4 9 9 C 1.47614 * 120.49898 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99792 * 235.17679 * 9 8 7 11 11 N 1.34772 * 119.99935 * 55.17482 * 9 8 7 12 12 C 1.46802 * 119.58235 * 356.12021 * 11 9 8 13 13 C 1.51064 * 108.34363 * 129.65809 * 12 11 9 14 14 C 1.52739 * 110.27234 * 55.83411 * 13 12 11 15 15 C 1.53015 * 110.76418 * 298.26458 * 14 13 12 16 16 H 1.09000 * 111.38217 * 290.29839 * 15 14 13 17 17 C 1.45127 * 119.57568 * 176.13864 * 11 9 8 18 18 H 1.08997 * 109.96865 * 348.07605 * 17 11 9 19 19 C 1.54417 * 112.30199 * 110.92380 * 17 11 9 20 20 C 1.54567 * 102.44776 * 156.91970 * 19 17 11 21 21 N 1.48209 * 107.10932 * 168.09476 * 15 14 13 22 22 C 1.36940 * 125.76760 * 89.11624 * 21 15 14 23 23 H 1.08002 * 119.99975 * 355.14056 * 22 21 15 24 24 C 1.38813 * 120.00142 * 175.14789 * 22 21 15 25 25 N 1.31618 * 120.00053 * 5.76743 * 24 22 21 26 26 Si 1.86797 * 120.00053 * 185.77146 * 24 22 21 27 27 H 1.48503 * 109.47077 * 94.99147 * 26 24 22 28 28 H 1.48501 * 109.47327 * 214.99078 * 26 24 22 29 29 H 1.48501 * 109.47316 * 334.99501 * 26 24 22 30 30 H 1.09007 * 109.47037 * 274.70250 * 1 2 3 31 31 H 1.09003 * 109.47608 * 34.69889 * 1 2 3 32 32 H 1.08994 * 109.47463 * 154.70201 * 1 2 3 33 33 H 1.08001 * 120.36433 * 359.97438 * 3 2 1 34 34 H 0.96703 * 113.99561 * 269.97319 * 5 4 3 35 35 H 1.08003 * 119.68627 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.83229 * 247.47038 * 12 11 9 37 37 H 1.09003 * 109.83099 * 8.35416 * 12 11 9 38 38 H 1.08995 * 107.05108 * 296.61722 * 13 12 11 39 39 H 1.09001 * 110.38642 * 177.13711 * 13 12 11 40 40 H 1.09003 * 109.21043 * 177.94619 * 14 13 12 41 41 H 1.08999 * 109.21382 * 58.58648 * 14 13 12 42 42 H 1.09004 * 110.81365 * 275.16190 * 19 17 11 43 43 H 1.09008 * 110.81492 * 38.68147 * 19 17 11 44 44 H 1.08999 * 109.88410 * 97.73988 * 20 19 17 45 45 H 1.09004 * 109.88587 * 218.75271 * 20 19 17 46 46 H 0.96994 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0059 5 8 4.3042 2.3078 -0.0116 6 7 4.2547 -0.0065 -0.0055 7 6 3.6204 -1.1600 0.0000 8 6 2.2255 -1.2043 0.0051 9 6 1.5171 -2.4994 0.0107 10 8 0.6948 -2.7462 -0.8502 11 7 1.7819 -3.4082 0.9700 12 6 2.8367 -3.1365 1.9543 13 6 2.2707 -3.3723 3.3349 14 6 1.7053 -4.7872 3.4406 15 6 0.5596 -4.9892 2.4466 16 1 -0.3205 -4.4129 2.7322 17 6 1.0210 -4.6431 1.0165 18 1 0.1589 -4.5743 0.3531 19 6 1.8770 -5.8732 0.6446 20 6 1.1064 -7.0314 1.3185 21 7 0.2688 -6.4419 2.4058 22 6 -0.6118 -7.1051 3.2182 23 1 -1.1072 -6.5790 4.0209 24 6 -0.8674 -8.4536 3.0104 25 7 -0.1814 -9.1219 2.1076 26 14 -2.1852 -9.3196 4.0117 27 1 -3.4613 -9.3239 3.2521 28 1 -1.7641 -10.7181 4.2799 29 1 -2.3781 -8.6051 5.2992 30 1 -0.3633 0.0843 1.0243 31 1 -0.3634 0.8449 -0.5850 32 1 -0.3634 -0.9290 -0.4391 33 1 1.6935 2.1314 -0.0004 34 1 4.5037 2.6424 -0.8967 35 1 4.1848 -2.0808 0.0006 36 1 3.6667 -3.8275 1.8071 37 1 3.1869 -2.1099 1.8472 38 1 1.4709 -2.6463 3.4807 39 1 3.0423 -3.2286 4.0913 40 1 1.3351 -4.9509 4.4527 41 1 2.4961 -5.5064 3.2273 42 1 1.9117 -6.0084 -0.4365 43 1 2.8820 -5.7849 1.0574 44 1 0.4662 -7.5254 0.5876 45 1 1.8102 -7.7492 1.7399 46 1 -0.3598 -10.0642 1.9626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049714903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:05 Heat of formation + Delta-G solvation = -25.912886 kcal Electronic energy + Delta-G solvation = -29371.093137 eV Core-core repulsion = 25453.971787 eV Total energy + Delta-G solvation = -3917.121350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29395 -41.10275 -39.46330 -38.00306 -36.83270 -34.94574 -34.24483 -33.81478 -31.91918 -30.71478 -29.76138 -28.99844 -26.68890 -26.08291 -24.89247 -23.70750 -23.09558 -22.07058 -21.67714 -19.66074 -19.41314 -18.92030 -18.70714 -18.04156 -17.36090 -16.83591 -16.77747 -16.17872 -15.95666 -15.71728 -15.47875 -15.09315 -15.06843 -14.72413 -14.34884 -14.30139 -13.99518 -13.85470 -13.79285 -13.54375 -13.47352 -13.15331 -13.05680 -12.82500 -12.71618 -12.63637 -12.34429 -12.33090 -12.05334 -11.93813 -11.69052 -11.50605 -11.21115 -11.16888 -10.71945 -10.64621 -10.50979 -9.96883 -9.67653 -8.88958 -7.85979 -5.19241 -0.40980 0.05712 1.44025 1.46592 1.47711 1.55812 1.81677 2.35572 2.49489 2.69242 3.26470 3.34523 3.49071 3.51811 3.56941 3.83385 3.89629 3.94668 4.00584 4.04060 4.13515 4.21121 4.34776 4.38921 4.54155 4.57755 4.61496 4.64686 4.65211 4.68905 4.74999 4.82706 4.96546 5.00619 5.03778 5.16005 5.23334 5.32976 5.38506 5.39001 5.54109 5.57018 5.61882 5.71841 6.15286 6.29525 6.55223 6.78572 6.99132 7.05504 7.72402 8.42133 9.26378 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002938 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.156949 B = 9526.991738 C = 9671.307253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.182 4.182 4 C 0.330 3.670 5 O -0.487 6.487 6 N -0.525 5.525 7 C 0.165 3.835 8 C -0.203 4.203 9 C 0.566 3.434 10 O -0.569 6.569 11 N -0.579 5.579 12 C 0.099 3.901 13 C -0.124 4.124 14 C -0.117 4.117 15 C 0.151 3.849 16 H 0.048 0.952 17 C 0.147 3.853 18 H 0.073 0.927 19 C -0.132 4.132 20 C 0.186 3.814 21 N -0.619 5.619 22 C -0.231 4.231 23 H 0.082 0.918 24 C -0.065 4.065 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.291 1.291 28 H -0.295 1.295 29 H -0.267 1.267 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.175 0.825 34 H 0.425 0.575 35 H 0.181 0.819 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 23.633 -3.304 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 C -0.203 4.203 4 C 0.152 3.848 5 O -0.298 6.298 6 N -0.245 5.245 7 C 0.007 3.993 8 C -0.208 4.208 9 C 0.355 3.645 10 O -0.449 6.449 11 N -0.309 5.309 12 C -0.022 4.022 13 C -0.162 4.162 14 C -0.157 4.157 15 C 0.043 3.957 16 H 0.067 0.933 17 C 0.042 3.958 18 H 0.091 0.909 19 C -0.171 4.171 20 C 0.062 3.938 21 N -0.345 5.345 22 C -0.360 4.360 23 H 0.100 0.900 24 C -0.258 4.258 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.218 1.218 28 H -0.222 1.222 29 H -0.191 1.191 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.198 0.802 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.659 23.317 -3.111 25.429 hybrid contribution -1.688 -1.287 -0.127 2.127 sum 7.971 22.030 -3.238 23.650 Atomic orbital electron populations 1.21093 0.88886 1.04873 1.04199 1.20397 0.97697 0.90758 0.90137 1.22115 0.93366 0.99875 1.04912 1.19523 0.87577 0.85355 0.92348 1.84673 1.75740 1.33254 1.36112 1.67256 1.42259 0.98650 1.16294 1.22869 0.89434 0.95924 0.91053 1.20694 0.95936 0.93416 1.10762 1.18386 0.81636 0.83669 0.80842 1.90771 1.36494 1.79298 1.38318 1.47535 1.36479 1.17232 1.29608 1.21813 0.89647 1.03173 0.87575 1.21429 1.01670 0.96066 0.97072 1.21874 0.97983 0.96695 0.99132 1.21506 0.95911 0.85165 0.93072 0.93342 1.21277 0.94139 0.83073 0.97340 0.90870 1.22897 0.99332 0.94492 1.00367 1.21263 0.91477 0.92069 0.89026 1.45423 1.47770 1.02443 1.38832 1.19359 1.15972 0.92438 1.08240 0.89972 1.25603 1.01946 0.97503 1.00758 1.70135 1.43432 1.08225 1.38107 0.85121 0.78751 0.77523 0.78333 1.21819 1.22211 1.19134 0.89085 0.87950 0.91698 0.80742 0.71210 0.80208 0.89557 0.87493 0.92051 0.87847 0.93156 0.92731 0.91095 0.89650 0.96742 0.96846 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.74 71.23 0.69 -1.72 16 2 C 0.02 0.34 5.94 -19.43 -0.12 0.23 16 3 C -0.18 -2.65 9.74 22.43 0.22 -2.43 16 4 C 0.33 5.48 7.74 84.82 0.66 6.14 16 5 O -0.49 -6.15 13.55 -88.03 -1.19 -7.35 16 6 N -0.53 -10.41 10.37 -307.81 -3.19 -13.60 16 7 C 0.17 3.19 8.61 85.04 0.73 3.92 16 8 C -0.20 -4.51 4.79 -20.00 -0.10 -4.61 16 9 C 0.57 16.39 6.56 86.72 0.57 16.96 16 10 O -0.57 -20.93 14.58 -3.98 -0.06 -20.99 16 11 N -0.58 -16.26 2.77 -802.56 -2.23 -18.48 16 12 C 0.10 2.07 5.18 85.69 0.44 2.51 16 13 C -0.12 -2.79 5.94 29.88 0.18 -2.62 16 14 C -0.12 -3.82 5.16 30.51 0.16 -3.66 16 15 C 0.15 6.00 3.54 45.08 0.16 6.16 16 16 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.15 5.34 3.03 46.14 0.14 5.48 16 18 H 0.07 3.11 6.99 -2.39 -0.02 3.09 16 19 C -0.13 -4.90 6.11 31.61 0.19 -4.71 16 20 C 0.19 9.17 5.30 86.35 0.46 9.63 16 21 N -0.62 -31.31 2.99 -661.23 -1.98 -33.29 16 22 C -0.23 -12.84 10.30 84.03 0.87 -11.98 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 25 N -0.95 -57.41 10.55 21.65 0.23 -57.18 16 26 Si 0.97 46.02 29.56 68.60 2.03 48.05 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.10 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.06 1.63 5.75 -2.39 -0.01 1.61 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.43 1.01 9.06 -74.05 -0.67 0.34 16 35 H 0.18 2.84 7.43 -2.91 -0.02 2.82 16 36 H 0.09 1.60 7.61 -2.39 -0.02 1.58 16 37 H 0.11 1.84 4.77 -2.39 -0.01 1.82 16 38 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.90 7.15 -2.39 -0.02 1.88 16 42 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.08 2.76 6.94 -2.38 -0.02 2.74 16 44 H 0.01 0.81 7.29 -2.39 -0.02 0.79 16 45 H 0.01 0.72 7.79 -2.39 -0.02 0.70 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -74.87 360.82 -0.32 -75.20 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.35 Total: 11.58 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.72 Total: 16.07 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -7.17 Total: -122.56 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.25 Total: -28.34 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.87 -0.32 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049714903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.284 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds