Wall clock time and date at job start Tue Mar 31 2020 16:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40456 * 2 1 4 4 C 1.38339 * 119.45604 * 179.72033 * 3 2 1 5 5 C 1.39985 * 118.35272 * 0.57054 * 4 3 2 6 6 C 1.47520 * 120.60360 * 179.71307 * 5 4 3 7 7 O 1.21582 * 120.00353 * 134.66411 * 6 5 4 8 8 N 1.34782 * 119.99518 * 314.66178 * 6 5 4 9 9 C 1.47849 * 122.23040 * 354.65796 * 8 6 5 10 10 C 1.52424 * 110.73289 * 233.57321 * 9 8 6 11 11 C 1.53871 * 110.97822 * 310.04015 * 10 9 8 12 12 C 1.51084 * 107.40102 * 57.97878 * 11 10 9 13 13 H 1.08995 * 108.73563 * 51.43370 * 12 11 10 14 14 C 1.45724 * 122.22636 * 174.63364 * 8 6 5 15 15 H 1.08998 * 111.06969 * 240.54101 * 14 8 6 16 16 C 1.53433 * 117.00826 * 9.61259 * 14 8 6 17 17 C 1.55470 * 101.67024 * 152.97802 * 16 14 8 18 18 N 1.45026 * 119.18297 * 176.69828 * 12 11 10 19 19 C 1.36937 * 126.56262 * 331.20654 * 18 12 11 20 20 H 1.07996 * 120.00024 * 0.02562 * 19 18 12 21 21 C 1.38810 * 119.99794 * 179.97438 * 19 18 12 22 22 N 1.31617 * 120.00355 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47190 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47227 * 120.00101 * 23 21 19 26 26 H 1.48500 * 109.47251 * 240.00659 * 23 21 19 27 27 C 1.40287 * 118.80095 * 359.43380 * 5 4 3 28 28 O 1.35428 * 119.80009 * 180.27546 * 27 5 4 29 29 N 1.31876 * 119.41057 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46874 * 269.97179 * 1 2 3 31 31 H 1.08997 * 109.47554 * 29.97179 * 1 2 3 32 32 H 1.09000 * 109.47151 * 149.97385 * 1 2 3 33 33 H 1.08001 * 120.27341 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.82469 * 180.28129 * 4 3 2 35 35 H 1.09000 * 109.15984 * 352.87164 * 9 8 6 36 36 H 1.09002 * 109.15923 * 112.10347 * 9 8 6 37 37 H 1.09007 * 108.52239 * 190.20832 * 10 9 8 38 38 H 1.08996 * 110.16175 * 70.94273 * 10 9 8 39 39 H 1.09006 * 109.88234 * 298.48759 * 11 10 9 40 40 H 1.08997 * 109.88101 * 177.48239 * 11 10 9 41 41 H 1.08993 * 110.98597 * 271.07769 * 16 14 8 42 42 H 1.08996 * 110.98687 * 34.88619 * 16 14 8 43 43 H 1.09004 * 109.95727 * 96.77838 * 17 16 14 44 44 H 1.09007 * 109.96158 * 217.98251 * 17 16 14 45 45 H 0.97000 * 120.00409 * 179.97438 * 22 21 19 46 46 H 0.96695 * 114.00052 * 89.99706 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0059 5 6 4.2356 -0.0247 -0.0006 6 6 5.7097 -0.0813 -0.0011 7 8 6.2889 -0.8480 0.7437 8 7 6.4143 0.7171 -0.8274 9 6 5.7624 1.5827 -1.8332 10 6 6.3427 1.3302 -3.2198 11 6 7.8803 1.3787 -3.1908 12 6 8.3465 0.3382 -2.1994 13 1 7.8714 -0.6127 -2.4404 14 6 7.8695 0.7849 -0.7885 15 1 8.2086 1.7942 -0.5552 16 6 8.5926 -0.2558 0.0764 17 6 9.9696 -0.3566 -0.6383 18 7 9.7689 0.1161 -2.0237 19 6 10.7459 0.3013 -2.9651 20 1 10.4841 0.6468 -3.9543 21 6 12.0728 0.0458 -2.6478 22 7 12.3920 -0.3748 -1.4421 23 14 13.4057 0.2991 -3.9318 24 1 12.7902 0.7738 -5.1972 25 1 14.3770 1.3110 -3.4442 26 1 14.1095 -0.9858 -4.1748 27 6 3.4758 -1.2040 -0.0006 28 8 4.0992 -2.4063 -0.0012 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6410 2.1376 0.0004 34 1 4.1222 2.1346 0.0106 35 1 4.6959 1.3594 -1.8600 36 1 5.9022 2.6264 -1.5514 37 1 5.9747 2.1027 -3.8952 38 1 6.0240 0.3553 -3.5886 39 1 8.2142 2.3672 -2.8752 40 1 8.2771 1.1521 -4.1803 41 1 8.7091 0.1003 1.0999 42 1 8.0705 -1.2123 0.0545 43 1 10.6971 0.2810 -0.1359 44 1 10.3158 -1.3902 -0.6350 45 1 13.3192 -0.5536 -1.2204 46 1 4.2806 -2.7556 0.8820 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049750171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:54 Heat of formation + Delta-G solvation = 5.435923 kcal Electronic energy + Delta-G solvation = -29488.452702 eV Core-core repulsion = 25572.690738 eV Total energy + Delta-G solvation = -3915.761963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18586 -39.89693 -37.79077 -37.25122 -35.55099 -33.45577 -32.62635 -31.96435 -31.87658 -29.14601 -28.29808 -27.96633 -24.82069 -24.47206 -23.61942 -22.87193 -21.49438 -21.07513 -19.77190 -19.30579 -18.70906 -17.21641 -16.93127 -16.44155 -16.01358 -15.47676 -15.26618 -14.95830 -14.60600 -14.50325 -14.13894 -14.10067 -13.81017 -13.55871 -13.32005 -13.14702 -12.79253 -12.49644 -12.47500 -12.36907 -12.22868 -11.85779 -11.80316 -11.58039 -11.14422 -10.86670 -10.74554 -10.60288 -10.48403 -10.11199 -10.04500 -9.99578 -9.85681 -9.84120 -9.61763 -9.11818 -8.96089 -8.56060 -8.27185 -6.81322 -5.68244 -3.03002 0.44324 0.82672 2.71283 3.01982 3.25766 3.40908 3.45986 3.48702 3.52016 4.19278 4.32549 4.43100 4.50841 4.66456 4.79530 4.95773 5.06633 5.10019 5.19147 5.24119 5.26065 5.35283 5.42149 5.54132 5.60160 5.62345 5.64988 5.70430 5.76047 5.86943 5.99185 6.07457 6.14645 6.25394 6.29466 6.39855 6.55749 6.72654 6.77282 6.90701 7.18993 7.32983 7.56748 7.61651 7.65275 7.70352 7.86771 8.27688 8.31938 9.22037 9.85296 10.52668 11.43182 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.003088 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.851586 B = 9064.032135 C = 9592.894933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.191 4.191 4 C -0.028 4.028 5 C -0.198 4.198 6 C 0.572 3.428 7 O -0.520 6.520 8 N -0.592 5.592 9 C 0.107 3.893 10 C -0.130 4.130 11 C -0.115 4.115 12 C 0.159 3.841 13 H 0.019 0.981 14 C 0.116 3.884 15 H 0.081 0.919 16 C -0.133 4.133 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.367 3.633 28 O -0.470 6.470 29 N -0.507 5.507 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.252 0.748 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.595 6.229 3.253 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.211 4.211 4 C -0.054 4.054 5 C -0.205 4.205 6 C 0.359 3.641 7 O -0.397 6.397 8 N -0.324 5.324 9 C -0.016 4.016 10 C -0.168 4.168 11 C -0.154 4.154 12 C 0.050 3.950 13 H 0.036 0.964 14 C 0.012 3.988 15 H 0.099 0.901 16 C -0.172 4.172 17 C 0.049 3.951 18 N -0.317 5.317 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.188 3.812 28 O -0.278 6.278 29 N -0.227 5.227 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -23.453 5.008 3.043 24.175 hybrid contribution 1.310 0.827 -0.266 1.572 sum -22.143 5.835 2.777 23.067 Atomic orbital electron populations 1.20809 0.88235 1.03934 1.03495 1.21230 0.97011 0.87230 0.91717 1.21884 0.94395 0.99544 1.05274 1.21764 0.94375 0.97166 0.92117 1.21207 0.95594 0.94432 1.09249 1.17745 0.85418 0.80357 0.80629 1.90774 1.70188 1.37675 1.41086 1.47900 1.07560 1.42335 1.34603 1.21853 0.97072 0.94105 0.88562 1.21858 0.97118 1.02369 0.95486 1.21431 0.92975 1.00085 1.00903 1.20760 0.87113 0.95256 0.91913 0.96353 1.22450 0.76595 0.99858 0.99887 0.90094 1.23029 0.97574 0.99080 0.97500 1.21633 0.91013 0.99114 0.83329 1.43950 0.99995 1.77128 1.10628 1.19039 0.85832 1.38453 0.92082 0.90341 1.24808 0.97133 1.01589 0.96882 1.69963 1.16907 1.51289 1.18524 0.86074 0.82084 0.77340 0.80424 1.20553 1.21800 1.21783 1.19053 0.86060 0.84992 0.91137 1.84661 1.76478 1.32209 1.34491 1.67101 1.09319 1.30452 1.15839 0.89906 0.90180 0.90114 0.83823 0.83682 0.90494 0.91126 0.90920 0.91601 0.91708 0.91437 0.92246 0.89520 0.92424 0.94383 0.93782 0.72961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.00 0.37 -0.25 16 2 C 0.17 1.54 6.78 -82.53 -0.56 0.98 16 3 C -0.19 -1.49 9.71 -39.50 -0.38 -1.87 16 4 C -0.03 -0.27 7.66 -38.89 -0.30 -0.57 16 5 C -0.20 -2.60 5.02 -104.69 -0.53 -3.12 16 6 C 0.57 9.28 7.07 -12.47 -0.09 9.19 16 7 O -0.52 -9.94 13.18 -7.09 -0.09 -10.03 16 8 N -0.59 -9.28 2.90 -165.39 -0.48 -9.76 16 9 C 0.11 1.27 5.13 -3.60 -0.02 1.25 16 10 C -0.13 -1.68 5.94 -26.57 -0.16 -1.84 16 11 C -0.12 -1.97 5.42 -27.24 -0.15 -2.12 16 12 C 0.16 3.35 2.60 -68.36 -0.18 3.17 16 13 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 14 C 0.12 2.20 3.30 -66.80 -0.22 1.98 16 15 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 16 C -0.13 -2.84 5.15 -25.19 -0.13 -2.97 16 17 C 0.17 4.42 5.45 -2.05 -0.01 4.41 16 18 N -0.59 -15.27 3.32 -163.79 -0.54 -15.81 16 19 C -0.23 -6.25 9.94 -15.06 -0.15 -6.40 16 20 H 0.08 2.09 7.32 -52.49 -0.38 1.70 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -27.33 10.41 55.49 0.58 -26.75 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.37 5.03 7.74 -16.61 -0.13 4.90 16 28 O -0.47 -6.67 12.50 -30.36 -0.38 -7.05 16 29 N -0.51 -6.31 10.28 -9.21 -0.09 -6.41 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.15 1.10 7.17 -52.48 -0.38 0.72 16 35 H 0.08 0.79 5.20 -51.93 -0.27 0.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.07 1.21 7.73 -51.93 -0.40 0.81 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.95 6.09 -51.93 -0.32 1.64 16 43 H 0.06 1.59 7.11 -51.93 -0.37 1.22 16 44 H 0.04 1.07 7.83 -51.92 -0.41 0.66 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.41 4.29 9.06 45.56 0.41 4.70 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -34.59 361.13 -9.21 -43.80 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.89 Total: 2.97 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.73 Total: 6.43 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.54 Total: -58.73 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.47 Total: -17.08 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.59 -9.21 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.238 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds