Wall clock time and date at job start Tue Mar 31 2020 16:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40456 * 2 1 4 4 C 1.38339 * 119.45604 * 179.72033 * 3 2 1 5 5 C 1.39985 * 118.35272 * 0.57054 * 4 3 2 6 6 C 1.47520 * 120.60360 * 179.71307 * 5 4 3 7 7 O 1.21582 * 120.00353 * 134.66411 * 6 5 4 8 8 N 1.34782 * 119.99518 * 314.66178 * 6 5 4 9 9 C 1.47849 * 122.23040 * 354.65796 * 8 6 5 10 10 C 1.52424 * 110.73289 * 233.57321 * 9 8 6 11 11 C 1.53871 * 110.97822 * 310.04015 * 10 9 8 12 12 C 1.51084 * 107.40102 * 57.97878 * 11 10 9 13 13 H 1.08995 * 108.73563 * 51.43370 * 12 11 10 14 14 C 1.45724 * 122.22636 * 174.63364 * 8 6 5 15 15 H 1.08998 * 111.06969 * 240.54101 * 14 8 6 16 16 C 1.53433 * 117.00826 * 9.61259 * 14 8 6 17 17 C 1.55470 * 101.67024 * 152.97802 * 16 14 8 18 18 N 1.45026 * 119.18297 * 176.69828 * 12 11 10 19 19 C 1.36937 * 126.56262 * 331.20654 * 18 12 11 20 20 H 1.07996 * 120.00024 * 0.02562 * 19 18 12 21 21 C 1.38810 * 119.99794 * 179.97438 * 19 18 12 22 22 N 1.31617 * 120.00355 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47190 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47227 * 120.00101 * 23 21 19 26 26 H 1.48500 * 109.47251 * 240.00659 * 23 21 19 27 27 C 1.40287 * 118.80095 * 359.43380 * 5 4 3 28 28 O 1.35428 * 119.80009 * 180.27546 * 27 5 4 29 29 N 1.31876 * 119.41057 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46874 * 269.97179 * 1 2 3 31 31 H 1.08997 * 109.47554 * 29.97179 * 1 2 3 32 32 H 1.09000 * 109.47151 * 149.97385 * 1 2 3 33 33 H 1.08001 * 120.27341 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.82469 * 180.28129 * 4 3 2 35 35 H 1.09000 * 109.15984 * 352.87164 * 9 8 6 36 36 H 1.09002 * 109.15923 * 112.10347 * 9 8 6 37 37 H 1.09007 * 108.52239 * 190.20832 * 10 9 8 38 38 H 1.08996 * 110.16175 * 70.94273 * 10 9 8 39 39 H 1.09006 * 109.88234 * 298.48759 * 11 10 9 40 40 H 1.08997 * 109.88101 * 177.48239 * 11 10 9 41 41 H 1.08993 * 110.98597 * 271.07769 * 16 14 8 42 42 H 1.08996 * 110.98687 * 34.88619 * 16 14 8 43 43 H 1.09004 * 109.95727 * 96.77838 * 17 16 14 44 44 H 1.09007 * 109.96158 * 217.98251 * 17 16 14 45 45 H 0.97000 * 120.00409 * 179.97438 * 22 21 19 46 46 H 0.96695 * 114.00052 * 89.99706 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0059 5 6 4.2356 -0.0247 -0.0006 6 6 5.7097 -0.0813 -0.0011 7 8 6.2889 -0.8480 0.7437 8 7 6.4143 0.7171 -0.8274 9 6 5.7624 1.5827 -1.8332 10 6 6.3427 1.3302 -3.2198 11 6 7.8803 1.3787 -3.1908 12 6 8.3465 0.3382 -2.1994 13 1 7.8714 -0.6127 -2.4404 14 6 7.8695 0.7849 -0.7885 15 1 8.2086 1.7942 -0.5552 16 6 8.5926 -0.2558 0.0764 17 6 9.9696 -0.3566 -0.6383 18 7 9.7689 0.1161 -2.0237 19 6 10.7459 0.3013 -2.9651 20 1 10.4841 0.6468 -3.9543 21 6 12.0728 0.0458 -2.6478 22 7 12.3920 -0.3748 -1.4421 23 14 13.4057 0.2991 -3.9318 24 1 12.7902 0.7738 -5.1972 25 1 14.3770 1.3110 -3.4442 26 1 14.1095 -0.9858 -4.1748 27 6 3.4758 -1.2040 -0.0006 28 8 4.0992 -2.4063 -0.0012 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6410 2.1376 0.0004 34 1 4.1222 2.1346 0.0106 35 1 4.6959 1.3594 -1.8600 36 1 5.9022 2.6264 -1.5514 37 1 5.9747 2.1027 -3.8952 38 1 6.0240 0.3553 -3.5886 39 1 8.2142 2.3672 -2.8752 40 1 8.2771 1.1521 -4.1803 41 1 8.7091 0.1003 1.0999 42 1 8.0705 -1.2123 0.0545 43 1 10.6971 0.2810 -0.1359 44 1 10.3158 -1.3902 -0.6350 45 1 13.3192 -0.5536 -1.2204 46 1 4.2806 -2.7556 0.8820 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049750171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:53 Heat of formation + Delta-G solvation = -20.752803 kcal Electronic energy + Delta-G solvation = -29489.588330 eV Core-core repulsion = 25572.690738 eV Total energy + Delta-G solvation = -3916.897592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21440 -41.10490 -39.14903 -38.28148 -37.02971 -34.62294 -34.13820 -33.51127 -32.60358 -30.89192 -29.77421 -28.87805 -26.45828 -26.05730 -24.51157 -23.74720 -22.84426 -22.58926 -21.51541 -20.60296 -19.63309 -18.71561 -17.95492 -17.82837 -17.12365 -16.94409 -16.63688 -16.29710 -16.00229 -15.71404 -15.49685 -15.24832 -14.84074 -14.83063 -14.46566 -14.29300 -14.10756 -13.89804 -13.58329 -13.43136 -13.17683 -13.07463 -12.99916 -12.88323 -12.76633 -12.67180 -12.29316 -12.10732 -11.98715 -11.83316 -11.74280 -11.62490 -11.45814 -10.94935 -10.83386 -10.72625 -10.28754 -9.83956 -9.60373 -8.93167 -7.84883 -5.22744 -0.38222 0.08634 1.44957 1.46610 1.56490 1.58373 1.87837 2.41792 2.49249 2.68939 3.20205 3.33121 3.44007 3.64093 3.73240 3.87426 3.95166 3.96857 4.01791 4.08303 4.22214 4.28547 4.31752 4.44172 4.54269 4.56501 4.60881 4.70782 4.73435 4.84285 4.89202 4.94813 4.98894 5.03855 5.08212 5.11951 5.18161 5.26173 5.40054 5.47202 5.53428 5.58334 5.59603 5.72232 6.17441 6.39342 6.46534 6.83833 7.05107 7.08225 7.74716 8.43576 9.26423 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.003088 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.851586 B = 9064.032135 C = 9592.894933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.170 4.170 4 C -0.022 4.022 5 C -0.216 4.216 6 C 0.567 3.433 7 O -0.563 6.563 8 N -0.592 5.592 9 C 0.102 3.898 10 C -0.121 4.121 11 C -0.110 4.110 12 C 0.152 3.848 13 H -0.011 1.011 14 C 0.134 3.866 15 H 0.091 0.909 16 C -0.118 4.118 17 C 0.185 3.815 18 N -0.611 5.611 19 C -0.233 4.233 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.980 3.020 24 H -0.261 1.261 25 H -0.290 1.290 26 H -0.297 1.297 27 C 0.344 3.656 28 O -0.495 6.495 29 N -0.532 5.532 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.030 0.970 44 H -0.005 1.005 45 H 0.246 0.754 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 9.906 2.017 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.189 4.189 4 C -0.047 4.047 5 C -0.223 4.223 6 C 0.356 3.644 7 O -0.442 6.442 8 N -0.324 5.324 9 C -0.019 4.019 10 C -0.160 4.160 11 C -0.148 4.148 12 C 0.044 3.956 13 H 0.007 0.993 14 C 0.029 3.971 15 H 0.109 0.891 16 C -0.156 4.156 17 C 0.059 3.941 18 N -0.335 5.335 19 C -0.362 4.362 20 H 0.107 0.893 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.808 3.192 24 H -0.185 1.185 25 H -0.217 1.217 26 H -0.224 1.224 27 C 0.165 3.835 28 O -0.304 6.304 29 N -0.253 5.253 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.209 0.791 34 H 0.190 0.810 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -27.075 8.715 1.776 28.498 hybrid contribution 2.268 -0.361 0.132 2.300 sum -24.807 8.354 1.908 26.245 Atomic orbital electron populations 1.20955 0.85636 1.05072 1.04647 1.22017 0.98745 0.87028 0.90022 1.22357 0.93628 1.00681 1.02280 1.22097 0.95324 0.96431 0.90848 1.20933 0.93213 0.95941 1.12194 1.18289 0.86931 0.79359 0.79839 1.90742 1.71423 1.39276 1.42807 1.47959 1.05883 1.43028 1.35548 1.22223 0.97930 0.95105 0.86628 1.21847 0.93566 1.03256 0.97316 1.21404 0.96175 0.98627 0.98619 1.20934 0.84318 0.95415 0.94937 0.99328 1.22035 0.79025 0.98977 0.97058 0.89106 1.22753 0.95366 0.99590 0.97895 1.21322 0.92726 0.95849 0.84195 1.44220 1.01949 1.77076 1.10303 1.19456 0.86473 1.37368 0.92862 0.89343 1.25713 0.99545 1.02019 0.98967 1.70194 1.16809 1.52796 1.20586 0.84984 0.78916 0.76686 0.78593 1.18539 1.21704 1.22441 1.19229 0.86793 0.84799 0.92717 1.84609 1.76973 1.33304 1.35563 1.67140 1.08688 1.32511 1.16967 0.88570 0.86977 0.91066 0.79142 0.80990 0.87993 0.87570 0.86642 0.92997 0.90831 0.92702 0.91465 0.91102 0.95141 0.98715 0.94446 0.72156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 71.23 0.72 -0.06 16 2 C 0.16 2.40 6.78 42.58 0.29 2.69 16 3 C -0.17 -1.74 9.71 22.32 0.22 -1.52 16 4 C -0.02 -0.32 7.66 22.72 0.17 -0.14 16 5 C -0.22 -5.34 5.02 -19.91 -0.10 -5.44 16 6 C 0.57 18.27 7.07 86.69 0.61 18.88 16 7 O -0.56 -22.44 13.18 7.86 0.10 -22.33 16 8 N -0.59 -17.75 2.90 -795.44 -2.31 -20.06 16 9 C 0.10 2.00 5.13 85.93 0.44 2.44 16 10 C -0.12 -2.73 5.94 30.70 0.18 -2.55 16 11 C -0.11 -3.58 5.42 30.26 0.16 -3.42 16 12 C 0.15 6.53 2.60 45.50 0.12 6.64 16 13 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 14 C 0.13 5.08 3.30 46.14 0.15 5.24 16 15 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 16 C -0.12 -5.29 5.15 31.59 0.16 -5.12 16 17 C 0.18 10.05 5.45 86.99 0.47 10.52 16 18 N -0.61 -32.78 3.32 -672.12 -2.23 -35.01 16 19 C -0.23 -13.21 9.94 84.03 0.84 -12.37 16 20 H 0.09 4.72 7.32 -2.91 -0.02 4.70 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 22 N -0.95 -59.58 10.41 21.65 0.23 -59.35 16 23 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 C 0.34 9.37 7.74 85.13 0.66 10.03 16 28 O -0.49 -14.95 12.50 -75.40 -0.94 -15.89 16 29 N -0.53 -12.62 10.28 -296.05 -3.04 -15.67 16 30 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.11 0.14 8.07 -2.39 -0.02 0.12 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 34 H 0.17 1.59 7.17 -2.91 -0.02 1.57 16 35 H 0.10 1.57 5.20 -2.39 -0.01 1.56 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 2.28 8.12 -2.38 -0.02 2.26 16 40 H 0.05 1.91 7.73 -2.39 -0.02 1.89 16 41 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.07 3.43 6.09 -2.39 -0.01 3.42 16 43 H 0.03 1.80 7.11 -2.38 -0.02 1.78 16 44 H -0.01 -0.33 7.83 -2.38 -0.02 -0.35 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 46 H 0.42 9.86 9.06 -74.06 -0.67 9.18 16 Total: -1.00 -82.96 361.13 -0.26 -83.22 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.34 Total: 14.30 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.57 Total: 22.20 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -7.36 Total: -130.09 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.84 Total: -38.22 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -82.96 -0.26 -83.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.469 kcal (2) G-P(sol) polarization free energy of solvation -82.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds