Wall clock time and date at job start Tue Mar 31 2020 16:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.40697 * 2 1 4 4 C 1.38336 * 119.45603 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.34943 * 359.97438 * 4 3 2 6 6 C 1.47531 * 120.59560 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99947 * 233.36482 * 6 5 4 8 8 N 1.34773 * 120.00258 * 53.36116 * 6 5 4 9 9 C 1.47856 * 122.22383 * 355.01820 * 8 6 5 10 10 C 1.52722 * 111.05841 * 127.48636 * 9 8 6 11 11 C 1.53868 * 111.52193 * 48.53592 * 10 9 8 12 12 C 1.51085 * 107.34621 * 303.06892 * 11 10 9 13 13 H 1.09000 * 108.73363 * 309.16228 * 12 11 10 14 14 C 1.45721 * 122.22834 * 174.98828 * 8 6 5 15 15 H 1.09005 * 111.64207 * 119.17939 * 14 8 6 16 16 C 1.53424 * 116.37450 * 350.13009 * 14 8 6 17 17 C 1.55472 * 101.67406 * 207.26797 * 16 14 8 18 18 N 1.45025 * 119.20010 * 183.88495 * 12 11 10 19 19 C 1.36932 * 126.55659 * 28.76216 * 18 12 11 20 20 H 1.07997 * 120.00319 * 359.97438 * 19 18 12 21 21 C 1.38820 * 119.99810 * 179.97438 * 19 18 12 22 22 N 1.31611 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47295 * 120.00106 * 23 21 19 26 26 H 1.48501 * 109.47603 * 239.99906 * 23 21 19 27 27 C 1.40275 * 118.81045 * 0.27750 * 5 4 3 28 28 O 1.35422 * 119.80332 * 179.72314 * 27 5 4 29 29 N 1.31876 * 119.40754 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47038 * 89.99780 * 1 2 3 31 31 H 1.08999 * 109.47208 * 210.00608 * 1 2 3 32 32 H 1.09002 * 109.47036 * 330.00058 * 1 2 3 33 33 H 1.08000 * 120.26917 * 359.97438 * 3 2 1 34 34 H 1.08010 * 120.82142 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.16174 * 247.89077 * 9 8 6 36 36 H 1.08994 * 109.16111 * 7.13446 * 9 8 6 37 37 H 1.08996 * 109.07037 * 288.00855 * 10 9 8 38 38 H 1.08999 * 109.06987 * 169.06078 * 10 9 8 39 39 H 1.09003 * 109.88507 * 183.61176 * 11 10 9 40 40 H 1.08996 * 109.88582 * 62.52860 * 11 10 9 41 41 H 1.08998 * 110.98796 * 89.17068 * 16 14 8 42 42 H 1.09004 * 110.98913 * 325.36441 * 16 14 8 43 43 H 1.09001 * 109.95634 * 263.22432 * 17 16 14 44 44 H 1.08998 * 109.99459 * 141.99727 * 17 16 14 45 45 H 0.97005 * 120.00016 * 180.02562 * 22 21 19 46 46 H 0.96700 * 113.99606 * 90.00276 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2932 -0.7327 -0.8455 8 7 6.4099 0.5887 0.9360 9 6 5.7587 1.4808 1.9190 10 6 6.1719 1.1211 3.3446 11 6 7.6980 0.9687 3.4685 12 6 8.1282 -0.0819 2.4716 13 1 7.5067 -0.9672 2.6058 14 6 7.8589 0.4819 1.0476 15 1 8.3454 1.4466 0.9034 16 6 8.5291 -0.6081 0.2011 17 6 9.8016 -0.9188 1.0385 18 7 9.5188 -0.4915 2.4310 19 6 10.4018 -0.4848 3.4776 20 1 10.0810 -0.1495 4.4528 21 6 11.7095 -0.9090 3.2850 22 7 12.1003 -1.3180 2.0967 23 14 12.9143 -0.8992 4.7124 24 1 12.2319 -0.3990 5.9328 25 1 13.4085 -2.2789 4.9526 26 1 14.0603 -0.0127 4.3870 27 6 3.4758 -1.2041 -0.0059 28 8 4.0992 -2.4063 -0.0117 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6411 2.1376 -0.0004 34 1 4.1224 2.1345 -0.0010 35 1 6.0466 2.5116 1.7124 36 1 4.6768 1.3862 1.8263 37 1 5.6961 0.1820 3.6270 38 1 5.8363 1.9067 4.0216 39 1 7.9580 0.6501 4.4780 40 1 8.1850 1.9169 3.2412 41 1 8.7942 -0.2283 -0.7856 42 1 7.8904 -1.4878 0.1204 43 1 10.6517 -0.3623 0.6440 44 1 10.0127 -1.9879 1.0129 45 1 13.0140 -1.6148 1.9622 46 1 4.2803 -2.7596 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049750172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:58 Heat of formation + Delta-G solvation = 6.157418 kcal Electronic energy + Delta-G solvation = -29548.755980 eV Core-core repulsion = 25633.025304 eV Total energy + Delta-G solvation = -3915.730677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18646 -39.90160 -37.76512 -37.30764 -35.52229 -33.44627 -32.65658 -31.99075 -31.87713 -29.16400 -28.30880 -27.98091 -24.84127 -24.50135 -23.63604 -22.86893 -21.52257 -21.06875 -19.80223 -19.31164 -18.70895 -17.20359 -16.99263 -16.46608 -16.11578 -15.55492 -15.08969 -14.94999 -14.63958 -14.47947 -14.26490 -14.09126 -13.81840 -13.55964 -13.35467 -13.05560 -12.79077 -12.54592 -12.47346 -12.34550 -12.27593 -11.87024 -11.82418 -11.60812 -11.16629 -10.87914 -10.77125 -10.59566 -10.51113 -10.12482 -10.06170 -10.01959 -9.87401 -9.86566 -9.63291 -9.19912 -8.93805 -8.60511 -8.27881 -6.84343 -5.71026 -3.05560 0.48099 0.82473 2.71072 2.97136 3.25244 3.39288 3.44216 3.46192 3.47175 4.19995 4.32399 4.43039 4.48602 4.67147 4.77929 4.96352 5.02148 5.04931 5.21520 5.22084 5.24276 5.32385 5.39493 5.52251 5.58531 5.61272 5.65662 5.69458 5.73083 5.83155 5.95172 6.04589 6.13850 6.21770 6.25524 6.34897 6.52532 6.67996 6.75227 6.87211 7.13565 7.30104 7.55414 7.59166 7.62845 7.67227 7.83467 8.23683 8.32919 9.18223 9.82105 10.50084 11.40987 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.003147 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.524407 B = 8895.037587 C = 9338.662295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.165 3.835 3 C -0.189 4.189 4 C -0.031 4.031 5 C -0.193 4.193 6 C 0.564 3.436 7 O -0.507 6.507 8 N -0.593 5.593 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.016 0.984 14 C 0.116 3.884 15 H 0.082 0.918 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.592 5.592 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.363 3.637 28 O -0.465 6.465 29 N -0.505 5.505 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.252 0.748 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.596 8.313 -1.208 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.057 4.057 5 C -0.200 4.200 6 C 0.350 3.650 7 O -0.382 6.382 8 N -0.326 5.326 9 C -0.019 4.019 10 C -0.168 4.168 11 C -0.154 4.154 12 C 0.051 3.949 13 H 0.033 0.967 14 C 0.012 3.988 15 H 0.100 0.900 16 C -0.167 4.167 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.184 3.816 28 O -0.273 6.273 29 N -0.225 5.225 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -22.458 7.106 -2.231 23.661 hybrid contribution 1.247 0.688 1.240 1.889 sum -21.211 7.795 -0.991 22.619 Atomic orbital electron populations 1.20805 0.88228 1.03872 1.03534 1.21220 0.97008 0.87216 0.91936 1.21876 0.94378 0.99542 1.05090 1.21696 0.94368 0.97041 0.92546 1.21142 0.95633 0.94477 1.08747 1.17778 0.85547 0.79963 0.81707 1.90853 1.69865 1.40835 1.36635 1.47943 1.07930 1.45641 1.31100 1.21902 0.97462 0.93582 0.88915 1.21896 0.97685 1.01961 0.95210 1.21429 0.93137 1.00005 1.00841 1.20742 0.88298 0.94103 0.91797 0.96681 1.22451 0.77373 0.99678 0.99333 0.90037 1.22934 0.98222 0.97807 0.97745 1.21749 0.92354 0.99035 0.82082 1.44090 1.05415 1.74895 1.07262 1.19022 0.90171 1.37603 0.88709 0.90309 1.24811 0.97285 1.01357 0.96904 1.69955 1.17111 1.49068 1.20429 0.86077 0.81291 0.77268 0.81292 1.20551 1.21779 1.21777 1.19043 0.86104 0.84856 0.91618 1.84787 1.76483 1.32205 1.33781 1.67093 1.09281 1.30455 1.15687 0.89917 0.90125 0.90195 0.83808 0.83715 0.91271 0.90285 0.91970 0.90854 0.91386 0.91677 0.91885 0.90368 0.92492 0.94184 0.93733 0.73713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.26 16 2 C 0.16 1.54 6.78 -82.53 -0.56 0.98 16 3 C -0.19 -1.48 9.71 -39.50 -0.38 -1.86 16 4 C -0.03 -0.29 7.60 -38.89 -0.30 -0.59 16 5 C -0.19 -2.55 5.01 -104.69 -0.52 -3.08 16 6 C 0.56 9.17 6.84 -12.47 -0.09 9.08 16 7 O -0.51 -10.24 13.71 1.33 0.02 -10.23 16 8 N -0.59 -9.02 2.91 -165.21 -0.48 -9.50 16 9 C 0.10 1.17 5.56 -3.44 -0.02 1.15 16 10 C -0.13 -1.54 5.92 -26.42 -0.16 -1.70 16 11 C -0.12 -1.89 5.45 -27.24 -0.15 -2.04 16 12 C 0.16 3.25 2.58 -68.36 -0.18 3.07 16 13 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 14 C 0.12 2.15 3.32 -66.80 -0.22 1.93 16 15 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 16 C -0.13 -2.73 4.94 -25.20 -0.12 -2.85 16 17 C 0.17 4.32 5.47 -1.69 -0.01 4.32 16 18 N -0.59 -14.94 3.35 -163.28 -0.55 -15.49 16 19 C -0.23 -6.18 9.94 -15.06 -0.15 -6.33 16 20 H 0.08 2.06 7.31 -52.49 -0.38 1.67 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.09 10.46 55.49 0.58 -26.51 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.36 5.02 7.76 -16.61 -0.13 4.89 16 28 O -0.47 -6.68 12.74 -21.91 -0.28 -6.96 16 29 N -0.51 -6.36 10.28 -9.21 -0.09 -6.46 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.15 1.08 7.37 -52.48 -0.39 0.70 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.73 4.87 -51.93 -0.25 0.47 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 40 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.74 6.37 -51.93 -0.33 1.41 16 43 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 44 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.40 4.04 9.06 45.56 0.41 4.45 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -35.01 362.11 -8.98 -43.99 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.89 Total: 2.35 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.71 Total: 6.43 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.54 Total: -57.96 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.26 Total: -17.19 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.01 -8.98 -43.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.143 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds