Wall clock time and date at job start Tue Mar 31 2020 16:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.40697 * 2 1 4 4 C 1.38336 * 119.45603 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.34943 * 359.97438 * 4 3 2 6 6 C 1.47531 * 120.59560 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99947 * 233.36482 * 6 5 4 8 8 N 1.34773 * 120.00258 * 53.36116 * 6 5 4 9 9 C 1.47856 * 122.22383 * 355.01820 * 8 6 5 10 10 C 1.52722 * 111.05841 * 127.48636 * 9 8 6 11 11 C 1.53868 * 111.52193 * 48.53592 * 10 9 8 12 12 C 1.51085 * 107.34621 * 303.06892 * 11 10 9 13 13 H 1.09000 * 108.73363 * 309.16228 * 12 11 10 14 14 C 1.45721 * 122.22834 * 174.98828 * 8 6 5 15 15 H 1.09005 * 111.64207 * 119.17939 * 14 8 6 16 16 C 1.53424 * 116.37450 * 350.13009 * 14 8 6 17 17 C 1.55472 * 101.67406 * 207.26797 * 16 14 8 18 18 N 1.45025 * 119.20010 * 183.88495 * 12 11 10 19 19 C 1.36932 * 126.55659 * 28.76216 * 18 12 11 20 20 H 1.07997 * 120.00319 * 359.97438 * 19 18 12 21 21 C 1.38820 * 119.99810 * 179.97438 * 19 18 12 22 22 N 1.31611 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47295 * 120.00106 * 23 21 19 26 26 H 1.48501 * 109.47603 * 239.99906 * 23 21 19 27 27 C 1.40275 * 118.81045 * 0.27750 * 5 4 3 28 28 O 1.35422 * 119.80332 * 179.72314 * 27 5 4 29 29 N 1.31876 * 119.40754 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47038 * 89.99780 * 1 2 3 31 31 H 1.08999 * 109.47208 * 210.00608 * 1 2 3 32 32 H 1.09002 * 109.47036 * 330.00058 * 1 2 3 33 33 H 1.08000 * 120.26917 * 359.97438 * 3 2 1 34 34 H 1.08010 * 120.82142 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.16174 * 247.89077 * 9 8 6 36 36 H 1.08994 * 109.16111 * 7.13446 * 9 8 6 37 37 H 1.08996 * 109.07037 * 288.00855 * 10 9 8 38 38 H 1.08999 * 109.06987 * 169.06078 * 10 9 8 39 39 H 1.09003 * 109.88507 * 183.61176 * 11 10 9 40 40 H 1.08996 * 109.88582 * 62.52860 * 11 10 9 41 41 H 1.08998 * 110.98796 * 89.17068 * 16 14 8 42 42 H 1.09004 * 110.98913 * 325.36441 * 16 14 8 43 43 H 1.09001 * 109.95634 * 263.22432 * 17 16 14 44 44 H 1.08998 * 109.99459 * 141.99727 * 17 16 14 45 45 H 0.97005 * 120.00016 * 180.02562 * 22 21 19 46 46 H 0.96700 * 113.99606 * 90.00276 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2932 -0.7327 -0.8455 8 7 6.4099 0.5887 0.9360 9 6 5.7587 1.4808 1.9190 10 6 6.1719 1.1211 3.3446 11 6 7.6980 0.9687 3.4685 12 6 8.1282 -0.0819 2.4716 13 1 7.5067 -0.9672 2.6058 14 6 7.8589 0.4819 1.0476 15 1 8.3454 1.4466 0.9034 16 6 8.5291 -0.6081 0.2011 17 6 9.8016 -0.9188 1.0385 18 7 9.5188 -0.4915 2.4310 19 6 10.4018 -0.4848 3.4776 20 1 10.0810 -0.1495 4.4528 21 6 11.7095 -0.9090 3.2850 22 7 12.1003 -1.3180 2.0967 23 14 12.9143 -0.8992 4.7124 24 1 12.2319 -0.3990 5.9328 25 1 13.4085 -2.2789 4.9526 26 1 14.0603 -0.0127 4.3870 27 6 3.4758 -1.2041 -0.0059 28 8 4.0992 -2.4063 -0.0117 29 7 2.1546 -1.1488 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6411 2.1376 -0.0004 34 1 4.1224 2.1345 -0.0010 35 1 6.0466 2.5116 1.7124 36 1 4.6768 1.3862 1.8263 37 1 5.6961 0.1820 3.6270 38 1 5.8363 1.9067 4.0216 39 1 7.9580 0.6501 4.4780 40 1 8.1850 1.9169 3.2412 41 1 8.7942 -0.2283 -0.7856 42 1 7.8904 -1.4878 0.1204 43 1 10.6517 -0.3623 0.6440 44 1 10.0127 -1.9879 1.0129 45 1 13.0140 -1.6148 1.9622 46 1 4.2803 -2.7596 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049750172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:57 Heat of formation + Delta-G solvation = -20.974149 kcal Electronic energy + Delta-G solvation = -29549.932493 eV Core-core repulsion = 25633.025304 eV Total energy + Delta-G solvation = -3916.907190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21758 -41.09932 -39.14217 -38.32619 -36.99022 -34.61431 -34.12379 -33.52994 -32.61176 -30.89652 -29.74794 -28.88858 -26.45667 -26.06155 -24.53403 -23.74666 -22.83388 -22.56285 -21.50959 -20.58784 -19.66028 -18.70535 -17.99893 -17.79871 -17.23814 -17.03042 -16.59597 -16.26861 -15.89322 -15.64184 -15.42599 -15.32435 -14.97328 -14.78635 -14.39658 -14.30829 -14.07850 -13.93547 -13.56731 -13.41634 -13.17083 -13.08676 -13.02843 -12.87006 -12.76243 -12.68303 -12.25212 -12.10984 -11.98283 -11.81001 -11.73275 -11.61795 -11.47564 -10.99901 -10.81051 -10.74205 -10.34141 -9.83811 -9.59515 -8.92992 -7.85057 -5.22279 -0.34514 0.07872 1.45512 1.46903 1.53397 1.57356 1.86047 2.40492 2.49624 2.63548 3.21392 3.33912 3.44085 3.63305 3.73340 3.87227 3.95994 3.96706 4.01090 4.06346 4.22515 4.30012 4.32253 4.42800 4.52982 4.55391 4.63223 4.71192 4.74631 4.84184 4.88587 4.94394 5.00036 5.04347 5.08839 5.12497 5.17868 5.27100 5.40210 5.47789 5.53414 5.56701 5.58785 5.70079 6.16346 6.37145 6.46833 6.83206 7.03913 7.09311 7.74205 8.44232 9.27053 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.003147 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.524407 B = 8895.037587 C = 9338.662295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.168 4.168 4 C -0.025 4.025 5 C -0.212 4.212 6 C 0.564 3.436 7 O -0.560 6.560 8 N -0.590 5.590 9 C 0.099 3.901 10 C -0.119 4.119 11 C -0.111 4.111 12 C 0.154 3.846 13 H -0.003 1.003 14 C 0.132 3.868 15 H 0.087 0.913 16 C -0.112 4.112 17 C 0.184 3.816 18 N -0.611 5.611 19 C -0.231 4.231 20 H 0.091 0.909 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.292 1.292 27 C 0.340 3.660 28 O -0.492 6.492 29 N -0.531 5.531 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.173 0.827 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.027 0.973 44 H -0.002 1.002 45 H 0.246 0.754 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.255 12.025 0.396 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.187 4.187 4 C -0.050 4.050 5 C -0.219 4.219 6 C 0.352 3.648 7 O -0.439 6.439 8 N -0.322 5.322 9 C -0.022 4.022 10 C -0.158 4.158 11 C -0.149 4.149 12 C 0.046 3.954 13 H 0.014 0.986 14 C 0.027 3.973 15 H 0.105 0.895 16 C -0.151 4.151 17 C 0.059 3.941 18 N -0.335 5.335 19 C -0.359 4.359 20 H 0.109 0.891 21 C -0.263 4.263 22 N -0.605 5.605 23 Si 0.808 3.192 24 H -0.184 1.184 25 H -0.225 1.225 26 H -0.219 1.219 27 C 0.161 3.839 28 O -0.301 6.301 29 N -0.252 5.252 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.209 0.791 34 H 0.191 0.809 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -26.186 10.859 -0.577 28.354 hybrid contribution 2.227 -0.483 0.727 2.392 sum -23.959 10.376 0.149 26.110 Atomic orbital electron populations 1.20952 0.85637 1.05213 1.04488 1.22011 0.98741 0.87025 0.90247 1.22355 0.93607 1.00681 1.02049 1.22050 0.95340 0.96327 0.91295 1.20885 0.93242 0.95996 1.11747 1.18277 0.86973 0.78699 0.80828 1.90819 1.71268 1.42959 1.38851 1.47983 1.06233 1.46130 1.31867 1.22283 0.98876 0.93887 0.87116 1.21879 0.93776 1.03404 0.96720 1.21409 0.96641 0.98242 0.98633 1.20931 0.85208 0.94726 0.94530 0.98577 1.22038 0.79920 0.98432 0.96906 0.89512 1.22644 0.96375 0.98593 0.97483 1.21420 0.93351 0.95950 0.83416 1.44341 1.07345 1.75150 1.06711 1.19456 0.90537 1.36272 0.89666 0.89107 1.25715 0.99332 1.01825 0.99460 1.70188 1.16985 1.50652 1.22648 0.84990 0.78726 0.76613 0.78893 1.18370 1.22471 1.21932 1.19224 0.86836 0.84636 0.93206 1.84741 1.76985 1.33314 1.35080 1.67132 1.08654 1.32526 1.16855 0.88966 0.90879 0.86812 0.79074 0.80922 0.88362 0.87356 0.92425 0.86702 0.92428 0.91271 0.91814 0.91794 0.95446 0.98380 0.94493 0.72645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 71.24 0.72 -0.08 16 2 C 0.16 2.40 6.78 42.58 0.29 2.69 16 3 C -0.17 -1.72 9.71 22.32 0.22 -1.50 16 4 C -0.02 -0.36 7.60 22.72 0.17 -0.19 16 5 C -0.21 -5.28 5.01 -19.91 -0.10 -5.38 16 6 C 0.56 18.21 6.84 86.69 0.59 18.80 16 7 O -0.56 -23.63 13.71 -0.23 0.00 -23.63 16 8 N -0.59 -17.13 2.91 -794.86 -2.31 -19.45 16 9 C 0.10 1.80 5.56 86.03 0.48 2.28 16 10 C -0.12 -2.39 5.92 30.79 0.18 -2.21 16 11 C -0.11 -3.42 5.45 30.26 0.16 -3.26 16 12 C 0.15 6.33 2.58 45.50 0.12 6.44 16 13 H 0.00 -0.14 8.04 -2.39 -0.02 -0.16 16 14 C 0.13 4.95 3.32 46.14 0.15 5.10 16 15 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 16 C -0.11 -5.07 4.94 31.59 0.16 -4.91 16 17 C 0.18 9.93 5.47 86.87 0.48 10.41 16 18 N -0.61 -32.07 3.35 -670.48 -2.25 -34.32 16 19 C -0.23 -12.84 9.94 84.04 0.84 -12.00 16 20 H 0.09 4.72 7.31 -2.91 -0.02 4.70 16 21 C -0.07 -4.08 5.49 84.87 0.47 -3.62 16 22 N -0.96 -59.38 10.46 21.65 0.23 -59.15 16 23 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C 0.34 9.35 7.76 85.13 0.66 10.01 16 28 O -0.49 -15.03 12.74 -83.39 -1.06 -16.10 16 29 N -0.53 -12.73 10.28 -296.06 -3.04 -15.77 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.11 8.07 -2.39 -0.02 0.09 16 33 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 34 H 0.17 1.56 7.37 -2.91 -0.02 1.54 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.41 4.87 -2.39 -0.01 1.40 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.89 7.70 -2.39 -0.02 1.87 16 40 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 41 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.06 3.07 6.37 -2.38 -0.02 3.06 16 43 H 0.03 1.62 7.19 -2.39 -0.02 1.60 16 44 H 0.00 -0.13 7.81 -2.39 -0.02 -0.15 16 45 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 46 H 0.41 9.25 9.06 -74.06 -0.67 8.58 16 Total: -1.00 -84.19 362.11 -0.49 -84.68 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.34 Total: 13.05 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 5.58 Total: 22.59 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -7.38 Total: -128.69 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.07 Total: -39.73 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -84.19 -0.49 -84.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.708 kcal (2) G-P(sol) polarization free energy of solvation -84.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds