Wall clock time and date at job start Tue Mar 31 2020 16:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38348 * 119.40979 * 2 1 4 4 C 1.38334 * 119.45753 * 179.97438 * 3 2 1 5 5 C 1.39986 * 118.35142 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59862 * 180.02562 * 5 4 3 7 7 O 1.21596 * 120.00488 * 131.67899 * 6 5 4 8 8 N 1.34778 * 119.99998 * 311.67358 * 6 5 4 9 9 C 1.46795 * 119.57402 * 354.35267 * 8 6 5 10 10 C 1.53460 * 107.59849 * 232.05489 * 9 8 6 11 11 C 1.52741 * 108.44225 * 301.92413 * 10 9 8 12 12 C 1.53015 * 110.79403 * 63.77354 * 11 10 9 13 13 H 1.09007 * 111.38190 * 69.71350 * 12 11 10 14 14 C 1.45124 * 119.57673 * 174.36889 * 8 6 5 15 15 H 1.09005 * 109.96672 * 11.93080 * 14 8 6 16 16 C 1.54418 * 111.61184 * 248.64725 * 14 8 6 17 17 C 1.54549 * 102.36181 * 203.20995 * 16 14 8 18 18 N 1.47125 * 107.26268 * 22.02661 * 17 16 14 19 19 C 1.36934 * 125.76029 * 182.48140 * 18 17 16 20 20 H 1.08001 * 119.99491 * 179.69358 * 19 18 17 21 21 C 1.38807 * 120.00570 * 359.68737 * 19 18 17 22 22 N 1.31619 * 119.99781 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00413 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47233 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46794 * 300.00236 * 23 21 19 26 26 H 1.48500 * 109.47121 * 60.00192 * 23 21 19 27 27 C 1.40274 * 118.80563 * 0.26743 * 5 4 3 28 28 O 1.35425 * 119.80583 * 179.72889 * 27 5 4 29 29 N 1.31883 * 119.40118 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46968 * 89.99924 * 1 2 3 31 31 H 1.08991 * 109.47559 * 210.00020 * 1 2 3 32 32 H 1.09002 * 109.47049 * 330.00465 * 1 2 3 33 33 H 1.08000 * 120.27152 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.82385 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.83550 * 112.53531 * 9 8 6 36 36 H 1.09000 * 109.88630 * 351.61485 * 9 8 6 37 37 H 1.09002 * 109.64067 * 182.23590 * 10 9 8 38 38 H 1.09001 * 109.81605 * 61.71385 * 10 9 8 39 39 H 1.08994 * 109.20781 * 303.43623 * 11 10 9 40 40 H 1.08998 * 109.21002 * 184.11120 * 11 10 9 41 41 H 1.08999 * 110.81080 * 321.65530 * 16 14 8 42 42 H 1.09003 * 110.81229 * 84.98204 * 16 14 8 43 43 H 1.09000 * 109.98876 * 262.55031 * 17 16 14 44 44 H 1.09002 * 109.76615 * 141.38190 * 17 16 14 45 45 H 0.97003 * 120.00168 * 179.97438 * 22 21 19 46 46 H 0.96699 * 114.00184 * 89.99904 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2063 0.0005 5 6 4.2355 -0.0251 0.0005 6 6 5.7096 -0.0817 0.0016 7 8 6.2897 -0.8050 0.7882 8 7 6.4135 0.6683 -0.8693 9 6 5.7054 1.4423 -1.8962 10 6 6.3323 1.0953 -3.2533 11 6 7.8223 1.4264 -3.1959 12 6 8.5335 0.5529 -2.1602 13 1 8.5843 -0.4866 -2.4846 14 6 7.8616 0.7001 -0.7801 15 1 8.2106 -0.0855 -0.1099 16 6 8.3726 2.0813 -0.3157 17 6 9.8204 2.0974 -0.8562 18 7 9.8851 1.1267 -1.9600 19 6 11.0061 0.8038 -2.6770 20 1 10.9484 0.0712 -3.4684 21 6 12.2166 1.4180 -2.3867 22 7 12.2870 2.3105 -1.4219 23 14 13.7457 0.9780 -3.3653 24 1 14.8991 1.7667 -2.8627 25 1 14.0324 -0.4709 -3.2107 26 1 13.5213 1.2878 -4.8002 27 6 3.4757 -1.2042 -0.0058 28 8 4.0989 -2.4065 -0.0115 29 7 2.1544 -1.1490 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1343 0.0010 35 1 5.8176 2.5084 -1.6988 36 1 4.6484 1.1760 -1.8981 37 1 5.8562 1.6834 -4.0379 38 1 6.2007 0.0333 -3.4604 39 1 7.9465 2.4752 -2.9266 40 1 8.2661 1.2535 -4.1764 41 1 7.7808 2.8822 -0.7587 42 1 8.3640 2.1518 0.7721 43 1 10.5157 1.8092 -0.0678 44 1 10.0656 3.0938 -1.2239 45 1 13.1330 2.7395 -1.2188 46 1 4.2795 -2.7601 0.8702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049750173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:02 Heat of formation + Delta-G solvation = -1.921126 kcal Electronic energy + Delta-G solvation = -29357.504932 eV Core-core repulsion = 25441.423944 eV Total energy + Delta-G solvation = -3916.080989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24562 -39.90468 -37.95620 -37.34328 -35.36072 -33.46304 -32.42607 -32.05191 -31.90056 -29.18015 -28.45163 -27.92631 -24.90578 -24.34676 -23.66994 -22.97688 -22.01911 -20.74961 -20.00691 -18.82444 -18.32990 -17.50824 -17.05565 -16.88022 -16.04335 -15.97663 -14.95759 -14.82133 -14.74893 -14.39657 -14.22839 -13.94523 -13.79236 -13.69726 -13.36846 -13.08858 -12.80792 -12.55899 -12.51961 -12.36988 -12.08589 -11.94638 -11.85631 -11.40339 -11.06740 -11.00486 -10.79492 -10.65965 -10.60070 -10.26009 -10.12193 -10.06598 -9.98231 -9.64338 -9.63828 -9.48501 -9.07024 -8.62927 -8.32850 -6.87118 -5.71668 -3.05754 0.42043 0.80692 2.64054 3.01065 3.19618 3.40989 3.45396 3.46265 3.49200 4.16888 4.32218 4.41741 4.48595 4.65142 4.90014 4.95269 5.04985 5.11823 5.19497 5.23053 5.26272 5.35262 5.45585 5.53194 5.58249 5.59959 5.63309 5.65799 5.70099 5.83176 5.97135 6.09069 6.11712 6.18450 6.30463 6.32891 6.46250 6.56879 6.71615 6.93694 7.03821 7.27985 7.48822 7.54189 7.58690 7.60613 7.80944 8.19917 8.24828 9.20012 9.79560 10.45291 11.39617 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.002917 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.994262 B = 9596.963512 C = 9747.931068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.167 3.833 3 C -0.189 4.189 4 C -0.026 4.026 5 C -0.196 4.196 6 C 0.566 3.434 7 O -0.532 6.532 8 N -0.583 5.583 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.129 4.129 12 C 0.156 3.844 13 H 0.060 0.940 14 C 0.131 3.869 15 H 0.104 0.896 16 C -0.151 4.151 17 C 0.181 3.819 18 N -0.598 5.598 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.365 3.635 28 O -0.472 6.472 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.253 0.747 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.763 0.550 2.539 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.052 4.052 5 C -0.203 4.203 6 C 0.353 3.647 7 O -0.409 6.409 8 N -0.314 5.314 9 C -0.020 4.020 10 C -0.172 4.172 11 C -0.169 4.169 12 C 0.047 3.953 13 H 0.078 0.922 14 C 0.027 3.973 15 H 0.122 0.878 16 C -0.191 4.191 17 C 0.056 3.944 18 N -0.322 5.322 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C 0.186 3.814 28 O -0.280 6.280 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -23.569 -0.517 2.367 23.693 hybrid contribution 1.415 0.586 -0.141 1.538 sum -22.154 0.069 2.226 22.266 Atomic orbital electron populations 1.20812 0.88191 1.03894 1.03580 1.21237 0.97032 0.87214 0.91670 1.21890 0.94370 0.99590 1.05078 1.21765 0.94402 0.97170 0.91884 1.21089 0.95314 0.94515 1.09380 1.17881 0.85749 0.79921 0.81146 1.90776 1.70857 1.39339 1.39951 1.47522 1.07195 1.45681 1.31010 1.21996 0.96005 0.95908 0.88078 1.21925 0.97858 1.01820 0.95587 1.22121 0.92455 1.01307 1.01051 1.21352 0.86420 0.96084 0.91413 0.92154 1.21836 0.76743 0.99335 0.99407 0.87831 1.23127 1.00135 0.95692 1.00096 1.21166 0.88948 0.93828 0.90440 1.44703 1.03054 1.46071 1.38394 1.18989 0.85543 1.19288 1.11670 0.90481 1.24789 0.97681 0.99018 0.98822 1.69941 1.24913 1.30044 1.32035 0.86197 0.82594 0.77710 0.79238 1.21631 1.21154 1.21210 1.19028 0.86101 0.84906 0.91411 1.84656 1.76540 1.32238 1.34560 1.67111 1.09251 1.30458 1.15823 0.89834 0.90132 0.90172 0.83730 0.83569 0.91065 0.90219 0.91265 0.91751 0.91811 0.92045 0.92230 0.92026 0.93023 0.93964 0.93684 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.51 6.78 -82.53 -0.56 0.95 16 3 C -0.19 -1.46 9.71 -39.51 -0.38 -1.84 16 4 C -0.03 -0.25 7.67 -38.89 -0.30 -0.55 16 5 C -0.20 -2.53 4.78 -104.69 -0.50 -3.03 16 6 C 0.57 9.06 6.93 -12.48 -0.09 8.97 16 7 O -0.53 -10.20 15.86 -3.95 -0.06 -10.26 16 8 N -0.58 -9.04 2.73 -166.25 -0.45 -9.49 16 9 C 0.10 1.26 4.93 -3.64 -0.02 1.25 16 10 C -0.13 -1.78 6.11 -26.63 -0.16 -1.94 16 11 C -0.13 -2.25 5.10 -26.86 -0.14 -2.38 16 12 C 0.16 3.18 3.59 -66.36 -0.24 2.95 16 13 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 2.45 3.12 -67.30 -0.21 2.24 16 15 H 0.10 2.21 6.93 -51.93 -0.36 1.85 16 16 C -0.15 -2.84 6.08 -25.17 -0.15 -2.99 16 17 C 0.18 4.33 5.19 -2.89 -0.01 4.31 16 18 N -0.60 -14.88 2.91 -162.21 -0.47 -15.35 16 19 C -0.23 -6.22 10.29 -15.06 -0.16 -6.38 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.84 10.33 55.49 0.57 -26.27 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.37 4.84 7.75 -16.61 -0.13 4.71 16 28 O -0.47 -6.37 12.61 -27.20 -0.34 -6.71 16 29 N -0.51 -6.12 10.28 -9.21 -0.09 -6.22 16 30 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.15 7.36 -52.49 -0.39 0.76 16 35 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 36 H 0.08 0.84 5.12 -51.93 -0.27 0.58 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.01 6.81 -51.93 -0.35 0.66 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.39 7.31 -51.93 -0.38 1.01 16 44 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.41 4.03 9.06 45.56 0.41 4.44 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -33.70 363.37 -9.01 -42.71 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.83 Total: 3.29 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.78 Total: 5.75 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.45 Total: -57.33 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.41 Total: -16.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.70 -9.01 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.790 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds