Wall clock time and date at job start Tue Mar 31 2020 16:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38348 * 119.40979 * 2 1 4 4 C 1.38334 * 119.45753 * 179.97438 * 3 2 1 5 5 C 1.39986 * 118.35142 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59862 * 180.02562 * 5 4 3 7 7 O 1.21596 * 120.00488 * 131.67899 * 6 5 4 8 8 N 1.34778 * 119.99998 * 311.67358 * 6 5 4 9 9 C 1.46795 * 119.57402 * 354.35267 * 8 6 5 10 10 C 1.53460 * 107.59849 * 232.05489 * 9 8 6 11 11 C 1.52741 * 108.44225 * 301.92413 * 10 9 8 12 12 C 1.53015 * 110.79403 * 63.77354 * 11 10 9 13 13 H 1.09007 * 111.38190 * 69.71350 * 12 11 10 14 14 C 1.45124 * 119.57673 * 174.36889 * 8 6 5 15 15 H 1.09005 * 109.96672 * 11.93080 * 14 8 6 16 16 C 1.54418 * 111.61184 * 248.64725 * 14 8 6 17 17 C 1.54549 * 102.36181 * 203.20995 * 16 14 8 18 18 N 1.47125 * 107.26268 * 22.02661 * 17 16 14 19 19 C 1.36934 * 125.76029 * 182.48140 * 18 17 16 20 20 H 1.08001 * 119.99491 * 179.69358 * 19 18 17 21 21 C 1.38807 * 120.00570 * 359.68737 * 19 18 17 22 22 N 1.31619 * 119.99781 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00413 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47233 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46794 * 300.00236 * 23 21 19 26 26 H 1.48500 * 109.47121 * 60.00192 * 23 21 19 27 27 C 1.40274 * 118.80563 * 0.26743 * 5 4 3 28 28 O 1.35425 * 119.80583 * 179.72889 * 27 5 4 29 29 N 1.31883 * 119.40118 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46968 * 89.99924 * 1 2 3 31 31 H 1.08991 * 109.47559 * 210.00020 * 1 2 3 32 32 H 1.09002 * 109.47049 * 330.00465 * 1 2 3 33 33 H 1.08000 * 120.27152 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.82385 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.83550 * 112.53531 * 9 8 6 36 36 H 1.09000 * 109.88630 * 351.61485 * 9 8 6 37 37 H 1.09002 * 109.64067 * 182.23590 * 10 9 8 38 38 H 1.09001 * 109.81605 * 61.71385 * 10 9 8 39 39 H 1.08994 * 109.20781 * 303.43623 * 11 10 9 40 40 H 1.08998 * 109.21002 * 184.11120 * 11 10 9 41 41 H 1.08999 * 110.81080 * 321.65530 * 16 14 8 42 42 H 1.09003 * 110.81229 * 84.98204 * 16 14 8 43 43 H 1.09000 * 109.98876 * 262.55031 * 17 16 14 44 44 H 1.09002 * 109.76615 * 141.38190 * 17 16 14 45 45 H 0.97003 * 120.00168 * 179.97438 * 22 21 19 46 46 H 0.96699 * 114.00184 * 89.99904 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2063 0.0005 5 6 4.2355 -0.0251 0.0005 6 6 5.7096 -0.0817 0.0016 7 8 6.2897 -0.8050 0.7882 8 7 6.4135 0.6683 -0.8693 9 6 5.7054 1.4423 -1.8962 10 6 6.3323 1.0953 -3.2533 11 6 7.8223 1.4264 -3.1959 12 6 8.5335 0.5529 -2.1602 13 1 8.5843 -0.4866 -2.4846 14 6 7.8616 0.7001 -0.7801 15 1 8.2106 -0.0855 -0.1099 16 6 8.3726 2.0813 -0.3157 17 6 9.8204 2.0974 -0.8562 18 7 9.8851 1.1267 -1.9600 19 6 11.0061 0.8038 -2.6770 20 1 10.9484 0.0712 -3.4684 21 6 12.2166 1.4180 -2.3867 22 7 12.2870 2.3105 -1.4219 23 14 13.7457 0.9780 -3.3653 24 1 14.8991 1.7667 -2.8627 25 1 14.0324 -0.4709 -3.2107 26 1 13.5213 1.2878 -4.8002 27 6 3.4757 -1.2042 -0.0058 28 8 4.0989 -2.4065 -0.0115 29 7 2.1544 -1.1490 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1343 0.0010 35 1 5.8176 2.5084 -1.6988 36 1 4.6484 1.1760 -1.8981 37 1 5.8562 1.6834 -4.0379 38 1 6.2007 0.0333 -3.4604 39 1 7.9465 2.4752 -2.9266 40 1 8.2661 1.2535 -4.1764 41 1 7.7808 2.8822 -0.7587 42 1 8.3640 2.1518 0.7721 43 1 10.5157 1.8092 -0.0678 44 1 10.0656 3.0938 -1.2239 45 1 13.1330 2.7395 -1.2188 46 1 4.2795 -2.7601 0.8702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049750173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:01 Heat of formation + Delta-G solvation = -26.830935 kcal Electronic energy + Delta-G solvation = -29358.585103 eV Core-core repulsion = 25441.423944 eV Total energy + Delta-G solvation = -3917.161159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25510 -41.08618 -39.33086 -38.29403 -36.83911 -34.61877 -33.88062 -33.58211 -32.60382 -30.91403 -29.87296 -28.88179 -26.48023 -25.93528 -24.58245 -23.79964 -23.32823 -22.09511 -21.72713 -19.83806 -19.56907 -18.85831 -18.58955 -17.95915 -17.25028 -16.86874 -16.79286 -16.14728 -15.88786 -15.81591 -15.29486 -15.07428 -14.93622 -14.86322 -14.56396 -14.15750 -14.10073 -13.81014 -13.59691 -13.52444 -13.17513 -13.05554 -12.98184 -12.82395 -12.67771 -12.62152 -12.38599 -12.31260 -12.12672 -11.99637 -11.71063 -11.56575 -11.25530 -11.22288 -10.83930 -10.71229 -10.47451 -9.87184 -9.65415 -8.90734 -7.85276 -5.20960 -0.38830 0.07990 1.44120 1.47529 1.50627 1.53766 1.83959 2.39188 2.48636 2.68462 3.23419 3.32823 3.52379 3.62593 3.72132 3.84204 3.89233 3.95134 4.02328 4.06352 4.09485 4.29250 4.33649 4.43701 4.52275 4.55689 4.63019 4.71867 4.73945 4.81454 4.85301 4.94341 4.95234 5.01930 5.04873 5.14364 5.18537 5.31664 5.38405 5.51309 5.53772 5.58181 5.63396 5.73157 6.17177 6.29242 6.45173 6.82568 6.99439 7.08542 7.73871 8.39163 9.24461 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.002917 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.994262 B = 9596.963512 C = 9747.931068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.170 4.170 4 C -0.022 4.022 5 C -0.215 4.215 6 C 0.565 3.435 7 O -0.576 6.576 8 N -0.582 5.582 9 C 0.101 3.899 10 C -0.124 4.124 11 C -0.117 4.117 12 C 0.150 3.850 13 H 0.042 0.958 14 C 0.147 3.853 15 H 0.069 0.931 16 C -0.130 4.130 17 C 0.191 3.809 18 N -0.618 5.618 19 C -0.238 4.238 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.950 5.950 23 Si 0.977 3.023 24 H -0.293 1.293 25 H -0.282 1.282 26 H -0.275 1.275 27 C 0.345 3.655 28 O -0.493 6.493 29 N -0.530 5.530 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.190 0.810 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.016 0.984 45 H 0.247 0.753 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.517 2.453 1.556 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.189 4.189 4 C -0.047 4.047 5 C -0.221 4.221 6 C 0.354 3.646 7 O -0.456 6.456 8 N -0.312 5.312 9 C -0.020 4.020 10 C -0.163 4.163 11 C -0.157 4.157 12 C 0.043 3.957 13 H 0.060 0.940 14 C 0.041 3.959 15 H 0.087 0.913 16 C -0.169 4.169 17 C 0.066 3.934 18 N -0.343 5.343 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.220 1.220 25 H -0.208 1.208 26 H -0.201 1.201 27 C 0.166 3.834 28 O -0.303 6.303 29 N -0.251 5.251 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.207 0.793 34 H 0.187 0.813 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.034 0.966 45 H 0.056 0.944 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -27.388 1.380 1.356 27.456 hybrid contribution 2.454 -0.055 0.178 2.461 sum -24.934 1.325 1.535 25.016 Atomic orbital electron populations 1.20958 0.85606 1.05082 1.04696 1.22006 0.98744 0.86977 0.89892 1.22341 0.93555 1.00749 1.02236 1.22068 0.95383 0.96414 0.90836 1.20826 0.92879 0.96020 1.12422 1.18421 0.87219 0.78779 0.80185 1.90748 1.72118 1.41073 1.41694 1.47507 1.05553 1.46218 1.31903 1.22312 0.96853 0.96795 0.86035 1.21889 0.94739 1.02024 0.97640 1.21889 0.95138 0.99944 0.98709 1.21538 0.85116 0.95579 0.93502 0.94012 1.21296 0.79176 0.98123 0.97309 0.91321 1.22929 0.96848 0.96577 1.00586 1.20868 0.91458 0.92036 0.89041 1.44946 1.04313 1.46575 1.38442 1.19331 0.86781 1.18911 1.11698 0.90397 1.25598 1.00516 0.99411 1.00131 1.70156 1.25021 1.31156 1.33533 0.85181 0.78813 0.77281 0.78222 1.21959 1.20787 1.20093 1.19183 0.86772 0.84729 0.92709 1.84603 1.76965 1.33124 1.35649 1.67166 1.08618 1.32378 1.16902 0.88542 0.90875 0.87118 0.79251 0.81270 0.88489 0.87538 0.87609 0.92584 0.92207 0.93429 0.89234 0.91123 0.97212 0.96608 0.94363 0.72111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 71.24 0.72 0.00 16 2 C 0.16 2.33 6.78 42.58 0.29 2.62 16 3 C -0.17 -1.71 9.71 22.32 0.22 -1.49 16 4 C -0.02 -0.32 7.67 22.72 0.17 -0.14 16 5 C -0.21 -5.15 4.78 -19.91 -0.10 -5.25 16 6 C 0.57 17.85 6.93 86.69 0.60 18.45 16 7 O -0.58 -22.96 15.86 4.81 0.08 -22.88 16 8 N -0.58 -17.29 2.73 -798.14 -2.18 -19.48 16 9 C 0.10 2.10 4.93 86.48 0.43 2.53 16 10 C -0.12 -2.95 6.11 30.66 0.19 -2.76 16 11 C -0.12 -3.95 5.10 30.51 0.16 -3.79 16 12 C 0.15 6.27 3.59 45.08 0.16 6.43 16 13 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 14 C 0.15 5.58 3.12 46.14 0.14 5.72 16 15 H 0.07 3.10 6.93 -2.38 -0.02 3.09 16 16 C -0.13 -4.87 6.08 31.60 0.19 -4.68 16 17 C 0.19 9.54 5.19 86.79 0.45 9.99 16 18 N -0.62 -31.99 2.91 -667.10 -1.94 -33.93 16 19 C -0.24 -13.54 10.29 84.03 0.86 -12.68 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 22 N -0.95 -57.59 10.33 21.65 0.22 -57.37 16 23 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.35 8.93 7.75 85.13 0.66 9.59 16 28 O -0.49 -13.86 12.61 -78.37 -0.99 -14.85 16 29 N -0.53 -11.95 10.28 -296.06 -3.04 -14.99 16 30 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.11 8.07 -2.39 -0.02 0.09 16 33 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 34 H 0.17 1.71 7.36 -2.91 -0.02 1.69 16 35 H 0.10 1.61 7.53 -2.39 -0.02 1.59 16 36 H 0.11 1.74 5.12 -2.39 -0.01 1.73 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 2.08 7.13 -2.39 -0.02 2.06 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 2.82 6.81 -2.39 -0.02 2.80 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.01 0.55 7.31 -2.39 -0.02 0.53 16 44 H 0.02 0.86 7.59 -2.39 -0.02 0.84 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.42 9.02 9.06 -74.06 -0.67 8.35 16 Total: -1.00 -79.81 363.37 0.13 -79.68 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.34 Total: 13.90 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.62 Total: 21.33 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -6.94 Total: -125.76 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.91 Total: -37.73 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.81 0.13 -79.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049750173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.846 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds