Wall clock time and date at job start Tue Mar 31 2020 17:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38000 * 120.81961 * 2 1 4 4 C 1.39123 * 119.26424 * 180.02562 * 3 2 1 5 5 O 1.35500 * 119.52661 * 180.02562 * 4 3 2 6 6 N 1.32440 * 120.95044 * 0.27012 * 4 3 2 7 7 C 1.31639 * 121.79418 * 359.44369 * 6 4 3 8 8 C 1.39563 * 120.62865 * 0.55587 * 7 6 4 9 9 C 1.47608 * 120.49746 * 179.75079 * 8 7 6 10 10 O 1.21588 * 119.99998 * 141.23036 * 9 8 7 11 11 N 1.34782 * 120.00308 * 321.23383 * 9 8 7 12 12 C 1.47162 * 135.99755 * 4.48499 * 11 9 8 13 13 C 1.52647 * 87.97100 * 206.72048 * 12 11 9 14 14 C 1.47158 * 136.00388 * 184.85688 * 11 9 8 15 15 C 1.52557 * 113.89190 * 88.17360 * 13 12 11 16 16 C 1.53357 * 109.12558 * 190.30436 * 15 13 12 17 17 N 1.46884 * 108.75177 * 307.75793 * 16 15 13 18 18 C 1.36933 * 120.46024 * 235.60180 * 17 16 15 19 19 H 1.08005 * 119.99759 * 153.41873 * 18 17 16 20 20 C 1.38809 * 120.00624 * 333.41989 * 18 17 16 21 21 N 1.31618 * 120.00529 * 154.60614 * 20 18 17 22 22 Si 1.86807 * 119.99803 * 334.60524 * 20 18 17 23 23 H 1.48491 * 109.47022 * 94.96493 * 22 20 18 24 24 H 1.48493 * 109.47241 * 214.97115 * 22 20 18 25 25 H 1.48510 * 109.46920 * 334.96889 * 22 20 18 26 26 C 1.46896 * 119.07394 * 55.62927 * 17 16 15 27 27 C 1.52554 * 114.26200 * 220.76614 * 13 12 11 28 28 H 1.09001 * 109.47317 * 95.64907 * 1 2 3 29 29 H 1.09002 * 109.46849 * 215.64668 * 1 2 3 30 30 H 1.09000 * 109.46786 * 335.64918 * 1 2 3 31 31 H 1.08001 * 120.36575 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00154 * 89.99466 * 5 4 3 33 33 H 1.08001 * 119.68351 * 180.30655 * 7 6 4 34 34 H 1.08997 * 113.49351 * 321.41961 * 12 11 9 35 35 H 1.09000 * 113.48969 * 91.92362 * 12 11 9 36 36 H 1.08997 * 113.49202 * 268.08611 * 14 11 9 37 37 H 1.09007 * 113.48946 * 38.52613 * 14 11 9 38 38 H 1.08994 * 109.53034 * 310.20342 * 15 13 12 39 39 H 1.08997 * 109.52456 * 70.41265 * 15 13 12 40 40 H 1.09003 * 109.58613 * 187.97764 * 16 15 13 41 41 H 1.08993 * 109.58886 * 67.54242 * 16 15 13 42 42 H 0.96999 * 120.00155 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.59033 * 184.58885 * 26 17 16 44 44 H 1.08994 * 109.59275 * 64.13887 * 26 17 16 45 45 H 1.09005 * 109.52515 * 289.75562 * 27 13 12 46 46 H 1.08993 * 109.52963 * 49.88901 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1474 -0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0065 -0.0064 7 6 3.6205 -1.1600 -0.0011 8 6 2.2256 -1.2043 -0.0006 9 6 1.5172 -2.4993 -0.0001 10 8 0.5055 -2.6386 0.6596 11 7 1.9920 -3.5275 -0.7310 12 6 3.1809 -3.7753 -1.5621 13 6 2.3531 -4.7887 -2.3483 14 6 1.5458 -4.8922 -1.0533 15 6 1.5809 -4.1827 -3.5161 16 6 0.5987 -5.2253 -4.0640 17 7 1.3342 -6.4653 -4.3447 18 6 1.2940 -7.0290 -5.5920 19 1 2.1137 -7.6439 -5.9333 20 6 0.1998 -6.8104 -6.4177 21 7 0.3340 -6.8945 -7.7243 22 14 -1.4633 -6.3967 -5.6743 23 1 -1.6388 -4.9225 -5.6437 24 1 -2.5387 -7.0063 -6.4971 25 1 -1.5343 -6.9325 -4.2911 26 6 2.1130 -7.0925 -3.2686 27 6 3.1063 -6.0636 -2.7152 28 1 -0.3634 -0.1012 -1.0227 29 1 -0.3633 -0.8351 0.5989 30 1 -0.3633 0.9363 0.4237 31 1 1.6935 2.1314 0.0004 32 1 4.5076 2.6441 0.8835 33 1 4.1849 -2.0808 -0.0011 34 1 3.4847 -2.9122 -2.1543 35 1 4.0091 -4.2234 -1.0131 36 1 1.9245 -5.6472 -0.3643 37 1 0.4707 -4.9709 -1.2154 38 1 1.0295 -3.3073 -3.1733 39 1 2.2781 -3.8909 -4.3015 40 1 0.1456 -4.8530 -4.9829 41 1 -0.1776 -5.4202 -3.3242 42 1 -0.4307 -6.7420 -8.3012 43 1 2.6573 -7.9503 -3.6636 44 1 1.4421 -7.4172 -2.4734 45 1 3.8571 -5.8379 -3.4726 46 1 3.5939 -6.4669 -1.8278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050659488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:45 Heat of formation + Delta-G solvation = 30.528514 kcal Electronic energy + Delta-G solvation = -28919.770395 eV Core-core repulsion = 25005.096528 eV Total energy + Delta-G solvation = -3914.673867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40080 -40.57929 -38.66022 -37.28929 -36.28278 -34.17052 -32.67974 -31.42542 -30.59024 -30.38127 -28.44997 -27.26051 -26.24548 -24.60143 -23.81443 -23.00297 -22.55284 -21.22484 -19.87383 -18.79987 -18.31206 -17.78263 -17.21677 -16.56094 -16.26388 -16.14306 -15.76937 -15.19199 -14.90340 -14.44427 -14.28087 -13.95417 -13.85734 -13.70589 -13.52931 -13.25875 -13.03914 -12.89281 -12.81183 -12.57899 -12.40779 -12.15659 -12.07530 -11.86076 -11.77582 -11.60534 -10.81382 -10.64049 -10.49198 -10.37090 -10.07649 -9.94751 -9.90063 -9.81783 -9.60021 -9.49635 -9.33315 -8.78657 -8.59518 -7.02255 -5.99740 -3.31078 0.26158 0.77102 2.46994 2.63874 3.07115 3.31475 3.38401 3.48280 3.51548 4.07685 4.16856 4.29748 4.36210 4.51541 4.59163 4.80820 4.82437 4.91060 5.04582 5.06266 5.18058 5.29665 5.32089 5.32634 5.38930 5.39669 5.40749 5.54227 5.68634 5.76343 5.81384 5.86373 5.96561 5.98582 6.08555 6.12079 6.24521 6.29807 6.38927 6.57782 6.63458 6.64812 6.87872 7.01913 7.42717 7.58629 7.92945 7.94930 8.29448 8.91822 9.69889 10.07162 11.15976 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003089 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.804989 B = 9062.805405 C = 9329.233874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.195 4.195 4 C 0.332 3.668 5 O -0.480 6.480 6 N -0.509 5.509 7 C 0.165 3.835 8 C -0.191 4.191 9 C 0.594 3.406 10 O -0.534 6.534 11 N -0.635 5.635 12 C 0.096 3.904 13 C -0.077 4.077 14 C 0.114 3.886 15 C -0.108 4.108 16 C 0.132 3.868 17 N -0.603 5.603 18 C -0.262 4.262 19 H 0.085 0.915 20 C 0.027 3.973 21 N -0.901 5.901 22 Si 0.871 3.129 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.271 1.271 26 C 0.149 3.851 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.533 13.987 18.293 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.022 3.978 3 C -0.216 4.216 4 C 0.154 3.846 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.006 3.994 8 C -0.196 4.196 9 C 0.383 3.617 10 O -0.413 6.413 11 N -0.368 5.368 12 C -0.027 4.027 13 C -0.077 4.077 14 C -0.008 4.008 15 C -0.147 4.147 16 C 0.006 3.994 17 N -0.327 5.327 18 C -0.391 4.391 19 H 0.103 0.897 20 C -0.173 4.173 21 N -0.544 5.544 22 Si 0.701 3.299 23 H -0.217 1.217 24 H -0.230 1.230 25 H -0.196 1.196 26 C 0.023 3.977 27 C -0.157 4.157 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.262 0.738 33 H 0.182 0.818 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.090 0.910 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.704 14.107 17.991 23.825 hybrid contribution -1.663 0.491 0.778 1.900 sum 5.041 14.597 18.769 24.306 Atomic orbital electron populations 1.21220 0.88991 1.05127 1.04281 1.20290 0.97517 0.90569 0.89433 1.21978 0.93747 0.99504 1.06383 1.19352 0.87095 0.85232 0.92935 1.84726 1.75937 1.34057 1.34085 1.67188 1.41932 0.98203 1.15484 1.22734 0.90105 0.95259 0.91265 1.20783 0.95288 0.94203 1.09359 1.17356 0.84043 0.82165 0.78106 1.90733 1.25692 1.82857 1.41974 1.49551 1.25196 1.13909 1.48184 1.23318 0.89428 0.98871 0.91052 1.21652 0.96012 0.96119 0.93964 1.23146 1.01519 0.81804 0.94326 1.21733 0.99132 0.98069 0.95758 1.21255 0.92842 0.86469 0.98796 1.44333 1.56689 1.22879 1.08757 1.18893 1.02347 1.29395 0.88416 0.89699 1.25243 0.97776 0.99195 0.95049 1.69898 1.30585 1.51538 1.02354 0.87076 0.86135 0.77193 0.79492 1.21679 1.22982 1.19553 1.20916 0.92424 0.93849 0.90521 1.21882 0.98741 0.94567 1.00513 0.90001 0.87519 0.90807 0.83476 0.73788 0.81838 0.90274 0.89189 0.89500 0.90106 0.92775 0.90877 0.90804 0.95878 0.92764 0.91577 0.95895 0.90964 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.55 36.01 0.34 -1.05 16 2 C 0.03 0.33 5.94 -103.96 -0.62 -0.29 16 3 C -0.19 -1.82 9.70 -39.34 -0.38 -2.20 16 4 C 0.33 3.41 7.74 -16.96 -0.13 3.28 16 5 O -0.48 -4.02 13.55 -18.19 -0.25 -4.26 16 6 N -0.51 -5.91 10.37 -12.96 -0.13 -6.04 16 7 C 0.16 1.79 9.97 -17.14 -0.17 1.62 16 8 C -0.19 -2.28 5.74 -104.83 -0.60 -2.89 16 9 C 0.59 8.24 7.40 -12.43 -0.09 8.14 16 10 O -0.53 -8.86 15.17 5.29 0.08 -8.78 16 11 N -0.63 -8.09 3.45 -186.56 -0.64 -8.73 16 12 C 0.10 1.03 5.71 -8.38 -0.05 0.98 16 13 C -0.08 -1.03 0.83 -155.17 -0.13 -1.15 16 14 C 0.11 1.49 7.57 -8.22 -0.06 1.43 16 15 C -0.11 -1.78 5.26 -26.77 -0.14 -1.92 16 16 C 0.13 2.75 4.16 -3.65 -0.02 2.74 16 17 N -0.60 -13.46 2.73 -172.18 -0.47 -13.93 16 18 C -0.26 -7.05 9.97 -15.06 -0.15 -7.20 16 19 H 0.09 2.43 8.05 -52.48 -0.42 2.00 16 20 C 0.03 0.76 5.13 -17.43 -0.09 0.67 16 21 N -0.90 -27.12 13.97 55.49 0.78 -26.34 16 22 Si 0.87 21.94 24.52 -169.99 -4.17 17.77 16 23 H -0.29 -7.08 6.68 56.52 0.38 -6.70 16 24 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.27 -6.72 6.91 56.52 0.39 -6.32 16 26 C 0.15 2.62 6.42 -3.64 -0.02 2.60 16 27 C -0.12 -1.59 5.31 -26.78 -0.14 -1.73 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.30 5.55 -51.93 -0.29 1.01 16 30 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.40 1.21 9.06 45.56 0.41 1.62 16 33 H 0.16 1.46 6.75 -52.49 -0.35 1.11 16 34 H 0.08 0.83 7.84 -51.93 -0.41 0.42 16 35 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.09 0.98 8.06 -51.93 -0.42 0.57 16 37 H 0.08 1.21 7.53 -51.92 -0.39 0.82 16 38 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.73 4.57 -51.93 -0.24 1.49 16 41 H 0.02 0.48 6.88 -51.93 -0.36 0.13 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -34.00 364.22 -7.60 -41.60 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.83 Total: 0.22 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.45 Total: 3.02 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.47 Total: -55.05 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.17 Total: -13.05 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.17 Total: 17.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.00 -7.60 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050659488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.126 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds